NO14G00500, NO14G00500 (gene) Nannochloropsis oceanica

Overview
NameNO14G00500
Unique NameNO14G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4802
Alignment locationchr14:193475..198276 +

Link to JBrowse

Properties
Property NameValue
Descriptionpoly(A) binding protein 8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:193475..198276 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: CBN75775.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 308.9 bits (790), Expect = 2.500e-80
Identity = 232/438 (52.97%), Postives = 274/438 (62.56%), Query Frame = 0 
Query:    1 MKTVGEVIRADVLLDATGRSKGCGLVEFKTPAQARQAIATLNNTDLDGRQIFLREDREAGAAMGPAGEEPQKL---DPARQAQRVYVGNLSWNVDREQLRAHMAEV-GETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFK-GFDVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            M+T GEV+RADV+ DA+GRSKGCG+VE++TPA+A++AI TL +T+L GR IF+REDR                       Q  RVYVGNL+W+V  + L+ HM  + GE    +V+T+  GRS+GCGIVEY  PE+A  AIE+L+N+ L  R IFVREDRES    XXXXXXXXXXXXXXXXXXXXX                                             XXXXXXXXX     G R+YVGNL++ V WQ+LKDHMR VG VVHADVL+D DGRSKGCGIVEY++  GA RAIRELNNT L GR IFVREDRE                    XXXXXXXXXXX    RQLYVGNL FE TW  LKDHF+   +V+RA+V  D   RS+G+GTVRF T  EAQ A   LNGT L +R IEVRED++
Sbjct:   69 MRTAGEVVRADVMRDASGRSKGCGIVEYRTPAEAQEAINTLLDTELKGRLIFVREDRXXXXXXXXXXXXXXXXXXRGSGNQNARVYVGNLAWDVAWQDLKDHMRGLGGEVIRADVMTDQGGRSRGCGIVEYAEPEQATQAIEQLNNSELKNRMIFVREDRES--GTXXXXXXXXXXXXXXXXXXXXXGQMQMGPMGAFGGQPFAAGPGALMGQSMGGHMXXXXXXXXXXXXXXXXXXXXXXMPQATGNRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDRE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRTQEEAQSAIQELNGTELGSRQIEVREDSK 503
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: CBJ27081.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 238.4 bits (607), Expect = 4.100e-59
Identity = 161/433 (37.18%), Postives = 207/433 (47.81%), Query Frame = 0 
Query:    9 RADVLLDATGRSKGCGLVEFKTPAQARQAIATLNNTDLDGRQIFLREDREAGAAMGPAGEEPQKLDPARQAQ-------RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGFD-VQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            +A+V   A GRS+G GLV F + A A  AI  L +TDL GR I+LREDRE                             +V+V NL+++V  + L+ HM   G     +V   P GRSKG G VE++ P EA  AI +L  T L GRPI VRE+R                                                             AG      G                G +VYVGNLS+E  WQDLKDHMR  G+V   D+ ++  GRSKGC +VEY+ P  A  AIR+L++T+L GRLIFVREDRE+    GP+G      + +GA               RQ++V N+ +E  WQ LKDHFK    VQ  E+  DA GRS+G+ TVRFG+  +A  A + L+GT L+ R I VREDNR
Sbjct:   92 KAEVPCGADGRSRGYGLVTFTSAAGASDAIDRLQDTDLMGRPIYLREDREEQGFXXXXXXXXXXXXXXXXXXXXXXXNCKVFVSNLAYDVQWQDLKDHMKNAGSVIRADVFVGPDGRSKGLGTVEFSKPYEARNAISQLSETELMGRPIQVREERGD-----------------------------------------------------------AGNHGRGVGGA-------------AGAKVYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREE----GPIGSKRIGQLHEGA-------------EGRQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVREDNR 435
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: OEU13826.1 (RRM_1-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 234.2 bits (596), Expect = 7.800e-58
Identity = 189/480 (39.38%), Postives = 233/480 (48.54%), Query Frame = 0 
Query:    1 MKTVG-EVIRADVLLDATGRSKGCGLVEFKTPAQARQAIATLNNTDLDGRQIFLREDREAGAAMGPA-------------------------------GEEPQKLDPARQAQRVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDR--------------EDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHF-KGFDVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            MKT   EV+R DV+  + GRSKGCG+VEF T   A +AI TLN+T+L GR IF+REDRE   + G +                                       P  Q+ RVYVGNLSW+V   +L+ HM   GE    +V++E +GRSKGCGIVEY + +EA  AI  L +T L GR IFVREDR                                                   XXXXXXXX             XXXXXXXXXXXXXX   VYV NLSY+V+WQDLKDHMRK GNV  A VL  +DG S GCGIV + +   A RAIREL  +DL GR + +REDR                                   X               QLYVGNL +  TW+ LK+HF +  ++ RA+V     GRS+GFG VRF    +A+ A  SL G  L+ R++EVR D++
Sbjct:   89 MKTTNHEVVRCDVMQTSDGRSKGCGIVEFATNEGAAEAILTLNDTELSGRSIFVREDRETSNSGGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPESQSCRVYVGNLSWDVSWPELKDHMKTAGEVVRADVISEHNGRSKGCGIVEYATEDEAQQAIATLTHTELQGRTIFVREDR---------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVYVWNLSYDVSWQDLKDHMRKAGNVDQATVLTGNDGTSIGCGIVVFQSARDAQRAIRELQESDLNGRPVRLREDRVSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFSQPDNEDPVPEGTQLYVGNLSYSTTWRDLKNHFSQAGEIVRADVKTSDSGRSKGFGIVRFTRSDDAEAAISSLGGIELDGRSLEVRLDHK 517
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_009538814.1 (hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae] >EGZ05953.1 hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae])

HSP 1 Score: 229.9 bits (585), Expect = 1.500e-56
Identity = 154/383 (40.21%), Postives = 192/383 (50.13%), Query Frame = 0 
Query:   55 EDREAGAAMGPAGEEPQKLDPARQAQ---RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            + ++AG  +   GE+   +D  + A    RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                               P +A                 G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE+ +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL +E  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   A+A +A + LNG  +  R IEVR D R
Sbjct:   62 QQQQAGPILEQRGED-DDVDMEQAAAVGCRVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-ESNGRSKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVREDREAQ--------------------------------------------------------------PVSA------------VKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 355
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_008895224.1 (hypothetical protein PPTG_04709 [Phytophthora parasitica INRA-310] >ETI38596.1 hypothetical protein F443_15684 [Phytophthora parasitica P1569] >ETK78860.1 hypothetical protein L915_15224 [Phytophthora parasitica] >ETL32285.1 hypothetical protein L916_15116 [Phytophthora parasitica] >ETM38677.1 hypothetical protein L914_15081 [Phytophthora parasitica] >ETN19370.1 hypothetical protein PPTG_04709 [Phytophthora parasitica INRA-310] >ETO67404.1 hypothetical protein F444_15663 [Phytophthora parasitica P1976] >ETP08503.1 hypothetical protein F441_15503 [Phytophthora parasitica CJ01A1] >ETP36576.1 hypothetical protein F442_15523 [Phytophthora parasitica P10297] >KUF84306.1 putative RNA-binding protein [Phytophthora nicotianae])

HSP 1 Score: 225.3 bits (573), Expect = 3.600e-55
Identity = 147/354 (41.53%), Postives = 179/354 (50.56%), Query Frame = 0 
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+ A               G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   77 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTSTA-----------KPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 342
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_008895225.1 (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETI38597.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK78861.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL32286.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM38678.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN19373.1 hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETO67407.1 hypothetical protein, variant 3 [Phytophthora parasitica P1976] >ETP08504.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP36579.1 hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 225.3 bits (573), Expect = 3.600e-55
Identity = 147/354 (41.53%), Postives = 179/354 (50.56%), Query Frame = 0 
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+ A               G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   44 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTSTA-----------KPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 309
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_008895226.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETN19371.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETO67405.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP36577.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 225.3 bits (573), Expect = 3.600e-55
Identity = 147/354 (41.53%), Postives = 179/354 (50.56%), Query Frame = 0 
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+ A               G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   71 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTSTA-----------KPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 336
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_008895227.1 (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETN19372.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETO67406.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP36578.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 225.3 bits (573), Expect = 3.600e-55
Identity = 147/354 (41.53%), Postives = 179/354 (50.56%), Query Frame = 0 
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+ A               G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   44 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTSTA-----------KPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 309
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: ETL85524.1 (hypothetical protein L917_14946 [Phytophthora parasitica])

HSP 1 Score: 224.2 bits (570), Expect = 8.000e-55
Identity = 146/354 (41.24%), Postives = 178/354 (50.28%), Query Frame = 0 
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+                 G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   77 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTS-----------TTKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 342
[Close]
BLAST of NO14G00500 vs. NCBI_GenBank
Match: ETL85525.1 (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 224.2 bits (570), Expect = 8.000e-55
Identity = 146/354 (41.24%), Postives = 178/354 (50.28%), Query Frame = 0 
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+                 G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   71 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTS-----------TTKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 336
The following BLAST results are available for this feature:
BLAST of NO14G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN75775.12.500e-8052.97conserved unknown protein [Ectocarpus siliculosus][more]
CBJ27081.14.100e-5937.18conserved unknown protein [Ectocarpus siliculosus][more]
OEU13826.17.800e-5839.38RRM_1-domain-containing protein [Fragilariopsis cy... [more]
XP_009538814.11.500e-5640.21hypothetical protein PHYSODRAFT_348578 [Phytophtho... [more]
XP_008895224.13.600e-5541.53hypothetical protein PPTG_04709 [Phytophthora para... [more]
XP_008895225.13.600e-5541.53hypothetical protein, variant 3 [Phytophthora para... [more]
XP_008895226.13.600e-5541.53hypothetical protein, variant 1 [Phytophthora para... [more]
XP_008895227.13.600e-5541.53hypothetical protein, variant 2 [Phytophthora para... [more]
ETL85524.18.000e-5541.24hypothetical protein L917_14946 [Phytophthora para... [more]
ETL85525.18.000e-5541.24hypothetical protein, variant 1 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002244NSK002244Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00500.1NO14G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00500.2NO14G00500.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646884gene_5615Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00500.1NO14G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00500.2NO14G00500.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00500 ID=NO14G00500|Name=NO14G00500|organism=Nannochloropsis oceanica|type=gene|length=4802bp
ACAGGACGTTCCAAGCAGTTGGGAGGAGCCGGTAGATTTATTCTGAACTT
TGTTGTCTTAAAGGCGGCGAAGGAGAAAGAATAAAGGAAGGAAAAAAAGG
CAGCAGCAGAACAGCAGCAGCCCCACCACACACCACCTCTTTACCAGCTA
CACAAGTAGATGGCATCGTTGCTTCAAGGAACAGAAGACGCTCTTGATAT
GCCCATCGAAAGCATGATTGgtacgtacgggcgaagaagggaaaggaggg
aagggaggggagttaataagaacagggattctcctcccttcatttcagga
ggagggctacgtaaactccgccactttgtggaaatgagatggatgcgaca
tgtcacccgagtgggaagcgtctatttaaaggcgtctgtctagaggtgat
ttacaaggattggctgggggacagaatattgcggtggggaacagcggcgt
gctgggcaggcgtcggagttatagggtcagccttcttgttgtcaaataca
tcccccccactcactcactcacccgcccaactcgtcctccctccatccac
agAAGACAACAATGAAGCTGGCACCGCCGAGGGGGCCGCGCCCGTGAATC
CGAACAACCGTCGAGTATACGTGGGGAACTTGTCCTGGAGTACGGCGTGG
CAGGGGCTCAAGGACCACATGAAGACCGTCGGAGAGGgtgaggagatggg
aagggaagggaagggaagggaagggaagggaagagaaggcatggaaagag
gaggtggatagagggaaggataaggagatgagaagggaaggaaagggggt
gggggagagataggcgtagggatagaggggagggtgtcgtcctgacaagc
gcagttccgaggtagaaagaaagtcttattcctccctccctcccgcccgc
cccctttccttgcttccttcagTCATCCGCGCTGACGTCCTTCTGGATGC
GACGGGTCGCTCCAAGGGCTGTGGGTTGGTTGAATTTAAGACTCCCGCCC
AGGCTCGTCAGGCCATCGCCACCCTTAACAACACGGACCTTGATGgtacg
tacccctccctccctccctccctccctcccttcctttcttcgtcttatta
ccccatcgctctttcccatctcaccctcctgccctccttccctccctccc
tccctccccccttcccagGCCGTCAGATCTTCCTTCGGGAGGATCGCGAG
GCCGGTGCTGCCATGGGACCGGCAGGGGAGGAGCCGCAGAAGCTGGATCC
TGCCCGTCAAGCACAGCGTGTCTATGTAGGGAACTTGTCGTGGAATGTGG
ACCGGGAACAGCTCCGTGCCCACATGGCGGAAGTGGGGGAGAgtgagtaa
gggagggagggagggagggagggagggatggatggaaggagggtatgggg
ataaatgttagtgagcatgcatgaaatcataccattttcgttttctggat
cgtcggggaaagaaagaacctttctattcatttccttccctccctccctc
cctccctccccccctccctcagCGTCGTACTGCGAGGTGCTGACGGAGCC
CTCGGGGCGGTCCAAGGGCTGTGGCATTGTGGAGTACAACTCCCCGGAGG
AGgtgagggagggagggagggagagagggagggagggaggggaaaacatg
ggccgtcttacatgaactgaactgtcataatccattgacacaatccctca
cacctacctccctccctccctccctccctccctccctccttctcttagGC
GGCAGCTGCCATCGAGCGTCTGCACAACACCACCCTCAACGGCCGGCCCA
TTTTTGTCCGGGAGGACCGAGAGAGCGGCGCCGCGGGCGAGGGAGGAGGA
GGAGGACGAGGCGGGGGTGGGGGGCACCAGCACATGTACCAGCAGCACCA
CCACCACCAGgtgagcctttttttccttcctccctccctccctccctccc
tccctccctccctccctttcctcgttcctcgggtcccgcccgctcgtcaa
aaaaaaaaaaaaaaaagccgtccagaaaggaaacccaccctccctccctc
cctccctccctccctccttccttccctccccatcaccagCAGCAGCAAGT
GGTGTATCATCCTCACGCGGGCCATCATGTCGTCCATCACCCCGTGGTGC
ACCATCACGCCCCTCCTCCGCAATATCCCGGCGCGGGGCCCTTCCCCCCC
ACGGCGGGCGCGGGAGGTCGCGGCGGAGGGCGGGGCGGAGGAGCCCCGGG
AGGGGTGGGTGTGCGTGTGTATGTCGGCAACCTGTCGTATGAGGTGGCGT
GGCAAGACCTCAAGGACCACATGCGCAAGgtagggaggaagagagggagc
gagggaggcagcgaaggaggcagggagcgagggaggtagcgagggaggta
gcgtgggaaggaagagggaaggaagagggaggagggagggagggagaggg
aggacaagcaagggcctatggaaagtctgccaggtactcttgactcacct
ccttccctccctccctccctccctccctccctcccttgtccagGTGGGGA
ACGTGGTGCACGCGGACGTGTTGGAGGACCATGACGGACGGTCCAAAGGC
TGTGGCATTGTCGAGTACGACAACCCCCATGGCGCCATGCGGGCCATTCG
GGAGgtagggagggagggaggtagggagggagggagggagggagatccag
aaacaaagatacgccagcacattagaaccccacactcacgaggacctctc
ccttcctttctttccttcctgcttcccttcccttccttcctttcctccct
cctttcctccgtcccttccctcttcagTTGAACAATACGGACCTCAAAGG
CCGGCTCATCTTTGTGCGCGAGGACCGGGAAGACAAGAAGgtaagcccct
ccctccctcccccctccctccctccctccgcacccacccgcctaaccctt
cctcaccccctcctaccctccctccctgctccagGTCGGCGGCCCCGTCG
GCGGCGGCTTCCACGCCAATATGGGCCAGGGGGCGGCCATGCGAGGAGGA
GGGGGAGGAGGGCCTCCGTCCGCGGCGGGAAGGCAGCTCTATGTCGGAAA
CCTGGACTTTGAGgtgaggaggagggaggaaagaggggagggtaagggta
gttgaggggaggagggatggtgagagtgtctaatgcttgtctgaggctgc
tcccgtcgatccagacgtccttctgacggccttccctccctccctccctc
gttccctccctccctttgtctgtagATCACCTGGCAGGGCCTTAAAGACC
ACTTCAAGGGCTTTGACGTCCAGCGTGCTGAGGTAGCCTATGATGCCGAC
GGCCGCTCCCGGGGCTTTGGAACGgtacgcccccccccaccttcccttct
tccctccctccctccctcccttctcccttctgcacacgctcatctgccct
ccctctctccctctgtccctccttccttccctccccatcagGTCCGCTTT
GGAACGGTGGCTGAGGCTCAACGGGCGCAGGACTCTCTTAATGGCACCAC
CCTCAACAACCGCACCATCGAGGTGAGGGAGGACAACCGAGTGGTTTAAG
ATTTGCAGGAGGCACGAGAGGAGGAGGAGGAGAAAGAGGGGGGGGGGAAG
AGGACGGGTTTTATTACATCATGGTATCAGTCAATTCATGCGTGGGGTTC
GTAAGTGATGGAGGAGGAGGGTGAAGCGAAGGAGAGAGAAGTAAGGATCT
AGCGACGCCGGTCCCTCTCTTTTCCCCTCTTGTTTCAGTCTCCCTTTATC
CTGTAAACATGCCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGAGCACATCAAGAGGAGGGAGAGGAGGAAGGATGG
TCGGTAAAAGAGATATCGTCCCGACAGAACTAGTGAAGAAGAAAGACAGG
AGCACCACCACCACCAAGACCACCACCATGAGCAAGAGCCAGCAGGCATA
ATCAATTAATTTAGGAACAGAATGATTTGAAGATACCGCATTTGAGTACG
TAAGAGAGAGAGAGAGAGGAAGAGGGCAGAGGAGGTCGAAAGAGATAGAG
AGGGAAAGAGATCGACATTAAGATGAACAGGGGGATGGAGGAGGGAATGA
GGAGGAGAGGAGAAGAATGAGAAGGAAGGAGAGGAAAAGGTTGAGGAGGC
GGAGGAGGAGGAGGAGGAGACATAAGAGAGAAGAGAGACAAAATGAGTGA
CGGGAAGGTAAAAAAGATGGGACGGAGAGAAGAGGGGAAGCGTAGGGAGA
AACACAGCGTCGAGAAAAGGAAGGGGGTAATCCAGCAAGGAAGAGAGATC
TCCCTTGTTTTCCTTCCTTCTCATAAGCCTTTCTTCCCATTACATCACTC
GTCCGTCTTCCACTCACGGCTCTTCACGACAAGCCATACATCCGATAATA
CTCCCTTGATAAGAATAGCCACCCCCCCCGTTCCCTGTTTCACCCCCCCA
TTCCTCACCACCAATTAATCAACCCTTTTTGATTTATGTCTATGTGTGTG
TGCGTGTGAGTGTGTGTCTTGAGAGAGACAAAAGCGAGCGACAAGTAGAG
AGAGTGAGAGCAGGAGAAAGAGAAGTTGGGAATTGTCACCATAATTTCTC
TCGTGTCCTGCACGTACGGTTTGGATTTTCGGTTCAGTTGCAATAGATGG
GGCAGGGGCAAATAACAAGACAAGGAGGGATGAGGGAGAAGGTAGAAAAA
AAGAAAAAATGGAAAGTAAGAGCCTCAAGAAGACACAGATTGATGTATTC
GC
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protein sequence of NO14G00500.1

>NO14G00500.1-protein ID=NO14G00500.1-protein|Name=NO14G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MASLLQGTEDALDMPIESMIEDNNEAGTAEGAAPVNPNNRRVYVGNLSWS
TAWQGLKDHMKTVGEVIRADVLLDATGRSKGCGLVEFKTPAQARQAIATL
NNTDLDGRQIFLREDREAGAAMGPAGEEPQKLDPARQAQRVYVGNLSWNV
DREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLH
NTTLNGRPIFVREDRESGAAGEGGGGGRGGGGGHQHMYQQHHHHQQQQVV
YHPHAGHHVVHHPVVHHHAPPPQYPGAGPFPPTAGAGGRGGGRGGGAPGG
VGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEY
DNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGA
AMRGGGGGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGFDVQRAEVAYDA
DGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNRVV*
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protein sequence of NO14G00500.2

>NO14G00500.2-protein ID=NO14G00500.2-protein|Name=NO14G00500.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MKTVGEVIRADVLLDATGRSKGCGLVEFKTPAQARQAIATLNNTDLDGRQ
IFLREDREAGAAMGPAGEEPQKLDPARQAQRVYVGNLSWNVDREQLRAHM
AEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPI
FVREDRESGAAGEGGGGGRGGGGGHQHMYQQHHHHQQQQVVYHPHAGHHV
VHHPVVHHHAPPPQYPGAGPFPPTAGAGGRGGGRGGGAPGGVGVRVYVGN
LSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRA
IRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAAMRGGGGGG
PPSAAGRQLYVGNLDFEITWQGLKDHFKGFDVQRAEVAYDADGRSRGFGT
VRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNRVV*
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Synonyms
Publications