NO13G03030, NO13G03030 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_015760824.1 (PREDICTED: SWI/SNF complex subunit SMARCC2-like [Acropora digitifera]) HSP 1 Score: 116.3 bits (290), Expect = 6.200e-22 Identity = 70/205 (34.15%), Postives = 96/205 (46.83%), Query Frame = 0 Query: 808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTV-------------VVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000 H+ SWF + +H +ERR +PEFF G+ KTPE+YL YR++M++A +P+ LT TA RR LAGD A++RV FL+ WGLIN +V AD RP T S+ V + G R + V + KDDWN++A RT EC++ FL LP+E Sbjct: 616 HIIIPSYASWFDYNSVHAIERRAIPEFFNGKNKSKTPEVYLAYRNFMLDAYRLNPTEYLTATACRRNLAGDVCAVVRVHAFLEQWGLINYQVDADGRPTPMGPPST--SHFHVLLDTPAGLQPLQPAKTQVQSIYNTVTTRAQVRVGCVSCFRSLFFQGLEMFKDDWNKVAEHVG-------------TRTQDECILHFLRLPIE 805
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_009443658.1 (SWI/SNF complex subunit SMARCC1 isoform X2 [Pan troglodytes]) HSP 1 Score: 115.5 bits (288), Expect = 1.100e-21 Identity = 65/196 (33.16%), Postives = 97/196 (49.49%), Query Frame = 0 Query: 808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVE----LKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000 H+ SWF + IH +ERR LPEFF G+ KTPEIYL YR++M++ +P LT TA RR L GD A++RV FL+ WGL+N +V ++RP + T P ++ + + G + +++E KDDWN+++ +RT EC++ FL LP+E Sbjct: 448 HIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPT-PHFNVLADTPSGLVPLHLRSPQSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIE 629
BLAST of NO13G03030 vs. NCBI_GenBank
Match: KTF94105.1 (hypothetical protein cypCar_00012013 [Cyprinus carpio]) HSP 1 Score: 114.8 bits (286), Expect = 1.800e-21 Identity = 66/196 (33.67%), Postives = 99/196 (50.51%), Query Frame = 0 Query: 813 LIPS---WFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVE----LKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLEHQ 1002 +IPS WF + IH +ERR LPEFF G+ KTPEIYL YR++M++ +P LT T+ RR L GD A++RV FL+ WGL+N +V +++RP T P ++ + + G + +++E KDDWN+++ +RT EC++ FL LP+E Q Sbjct: 335 IIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDSESRPLPMGPPPT-PHFNVLADTPSGLVPLHHRPPQGKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIEDQ 516
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_017385498.1 (PREDICTED: SWI/SNF complex subunit SMARCC1 [Cebus capucinus imitator]) HSP 1 Score: 113.2 bits (282), Expect = 5.200e-21 Identity = 65/198 (32.83%), Postives = 95/198 (47.98%), Query Frame = 0 Query: 808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEG------GXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000 H+ SWF + IH +ERR LPEFF G+ KTPEIYL YR++M++ +P LT TA RR L GD A++RV FL+ WGL+N +V ++RP + T P ++ + + G L+ + KDDWN+++ +RT EC++ FL LP+E Sbjct: 449 HIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPT-PHFNVLADTPSGLVPLHLRSPQVNSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIE 632
BLAST of NO13G03030 vs. NCBI_GenBank
Match: ODV83157.1 (hypothetical protein CANARDRAFT_30250 [[Candida] arabinofermentans NRRL YB-2248]) HSP 1 Score: 112.5 bits (280), Expect = 8.900e-21 Identity = 69/219 (31.51%), Postives = 99/219 (45.21%), Query Frame = 0 Query: 816 SWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPA------------------------SFSLRHTLPSYSFVEE-----------EEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000 SWFQ +H +E+ LPEFF G KTP+IY YR++M+ A +P+ L++TAVRR L GDAGA+LRV +FLD WGLIN +V + RP S+ LP V+E +E +++L+ V + K DW ++A +TP EC+++FL LP+E Sbjct: 388 SWFQMRKVHKIEKHSLPEFFNGFNKNKTPQIYAKYRNFMINAYRLNPNEYLSFTAVRRNLVGDAGALLRVHKFLDKWGLINYQVDPETRPVPIEPPFTGDFTVDLDTPKGMFPFESYKPPKELPDLKKVKELMNEYSSNGSNGDEPSSKRQKIIKPDINKNWNEESLKKLLEGVRDYKSDWYKVAEHVGD-------------KTPEECIIRFLQLPIE 593
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_020627570.1 (SWI/SNF complex subunit SMARCC2-like [Orbicella faveolata]) HSP 1 Score: 109.8 bits (273), Expect = 5.800e-20 Identity = 89/321 (27.73%), Postives = 129/321 (40.19%), Query Frame = 0 Query: 36 ALFEPLKEALIEAAGEKGLDLGPIRAGDLAKLTGDLQQFMEDEFGVTAKQQGKEWLMTRIPARLFRDYSPKGPLFTILFAAYSQKALLQWRSFNFEAKGGIKREENVALFLALQRALQDEXXXXXXXXXXXXKWGPPVVVFDASVPQRVRDGLRKAVEKHGGVVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPPSLFFRLLGREQSTGRVHLHWCYYPDSYDEWLP---LEALPPSLPLDSGDSVVSGPPFVVTARFLRDVDKFNEWGNEADY 354 ALFEP+K+ L++ +K + + P LA LT L QF ED FG K K+ L+T++P ++F DYS G L IL + K WR F+F++ + + NV LFL +++AL++ P V + R+ L+ V++H G + EE+ P + R L R+ +V +HW YYPDSYD W+P +E P P G P+ V AR+L D+D FNEW NE DY Sbjct: 22 ALFEPVKQYLLKNC-KKYVQVEPPTNKILATLTAQLLQFQEDNFG---KDVSKQALLTKLPMKMFMDYSSGGSLCVILANMFKTKMEQGWRRFDFQSPS--RMDRNVELFLNIEKALKEAKLLTL-----------PQVFITPEIDPRLAVKLKDIVKRHNGAITEEKSEATHIVYGPPPPF----------------------------------------------------------PEEEWLRPLLRQDK--QVLVHWWYYPDSYDTWVPSTDIEDEPQPEPQHQG-------PWQVNARWLTDLDVFNEWMNEEDY 258 HSP 2 Score: 97.1 bits (240), Expect = 3.900e-16 Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 0 Query: 816 SWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPA 907 ++F +H +ERR LPEFF G+ KTPE+YL R++M++A +P+ LT TA RR L GD A++R+ FL+ WGLIN +V AD RPA Sbjct: 310 AFFSLCSVHAIERRALPEFFNGKNKSKTPEVYLACRNFMLDAYRLNPTEYLTATACRRNLGGDVCAVVRIHAFLEQWGLINYQVDADGRPA 400
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_012688065.1 (PREDICTED: SWI/SNF complex subunit SMARCC1-like, partial [Clupea harengus]) HSP 1 Score: 109.4 bits (272), Expect = 7.600e-20 Identity = 64/192 (33.33%), Postives = 92/192 (47.92%), Query Frame = 0 Query: 808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000 H+ SWF + +H +ERR LPEFF G+ KTPEIYL YR++M++ +P LT T+ RR L GD A++R+ FL+ WGLIN +V A++RP LP +G L+ + KDDWN+++ +RT EC++ FL LP+E Sbjct: 417 HIIIPSYTSWFDYNCVHQIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCALIRLAVFLEQWGLINYQVEAESRP--------LPMGPPPTPHSKGASAGRDWMEQETLL---------LLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIE 578
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_001641517.1 (predicted protein [Nematostella vectensis] >EDO49454.1 predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 109.4 bits (272), Expect = 7.600e-20 Identity = 90/325 (27.69%), Postives = 133/325 (40.92%), Query Frame = 0 Query: 36 ALFEPLKEALIEAAGEKGLDLGPIRAGDLAKLTGDLQQFMEDEFGVTAKQQGKEWLMTRIPARLFRDYSPKGPLFTILFAAYSQKALLQWRSFNFEAKGGIKREENVALFLALQRALQDEXXXXXXXXXXXXKWGPPVVVFDASVPQRVRDGLRKAVEKHGGVVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPPSL----FFRLLGREQSTGRVHLHWCYYPDSYDEWLPLEAL---PPSLPLDSGDSVVSGPPFVVTARFLRDVDKFNEWGNEADY 354 ALFEP+K+ L++ +K + + P LA L L QF ED FG T + +T++P +LF+DYS G L TIL Y + WR F+F++ I R NV +FL ++RA+++ P V V Q LR V++H G +++++ CPP L + R L +++ G+V +HW YYPDSYD W+P + P P G P+ VT R+L D++K+NEW NE DY Sbjct: 22 ALFEPVKQYLLK-NHKKYVQVEPPTNKGLATLVAQLLQFQEDNFGHTVAKPP----LTKLPIKLFQDYSANGGLCTILACVYKTRTDQGWRRFDFQSPSRIDR--NVEMFLNIERAVKEAKLLMI-----------PQVYIAQDVDQSQVAKLRDIVKRHNGNIVDDK--------------------------------------------------------------TSATHIVHACPPPLPEEDWLRPL--KKNEGQVLVHWWYYPDSYDTWVPSTDVLDEPQPEPDHKG-------PWEVTGRWLTDLEKYNEWMNEEDY 257 HSP 2 Score: 105.1 bits (261), Expect = 1.400e-18 Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 0 Query: 808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPA 907 H+ SW+ + IH +ERR LPEFF G+ KTPEIYL R++M++A +P+ LT TA RR LAGD AI+R+ FL+ WGLIN +V AD+RPA Sbjct: 432 HIVIPSYASWYDYNSIHAIERRALPEFFNGQNRSKTPEIYLAMRNFMIDAYRLNPTEYLTATACRRNLAGDVCAIVRIHAFLEQWGLINYQVDADSRPA 530
BLAST of NO13G03030 vs. NCBI_GenBank
Match: OTF69437.1 (SWI/SNF complex subunit SMARCC2-like protein [Euroglyphus maynei]) HSP 1 Score: 108.2 bits (269), Expect = 1.700e-19 Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 0 Query: 808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARP 906 H+ SWF + IH +ERR LPEFF GR KTPE+Y+ YR++M++ +P+ LT TAVRR +AGD AI+RV FL+ WGLIN +V DARP Sbjct: 85 HIIIPSYASWFDYNCIHAVERRALPEFFNGRNKSKTPEVYIAYRNFMIDTYRLNPTEYLTLTAVRRNIAGDVCAIMRVHAFLEQWGLINYQVDVDARP 182
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_020544348.1 (SWI/SNF complex subunit SWI3 [Pichia kudriavzevii] >KGK40689.1 hypothetical protein JL09_g85 [Pichia kudriavzevii] >ONH74301.1 SWI/SNF complex subunit SWI3 [Pichia kudriavzevii]) HSP 1 Score: 107.8 bits (268), Expect = 2.200e-19 Identity = 70/227 (30.84%), Postives = 103/227 (45.37%), Query Frame = 0 Query: 816 SWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHT---------------LPSY--------------------------SFVEEEEEG--GXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000 SWF+ S IH +ER LPEFF G+ KTPEIY+ YR++M+ + +P+ L++TAVRR L GD+GA+LR+ +FL WG+IN +V + RP +T SY F E E EG +++L+ V + K+DW +IA+ G +T EC+++FL LP+E Sbjct: 236 SWFELSSIHDIERESLPEFFQGQNKSKTPEIYIKYRNFMVNSYRLNPNDYLSFTAVRRNLIGDSGALLRIHKFLTKWGIINYQVNPETRPQQIEPPYTGDFIVDYDTPRGMFPFESYKPPTEFPDLSHFKSLIGNKNQNETQTKFEEGEREGEPKLKKQRIIKADINKDWSEKSLQKLVDGVSQFKNDWYKIAAHV------------GDNKTAEECIIRFLQLPIE 450 The following BLAST results are available for this feature:
BLAST of NO13G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G03030 ID=NO13G03030|Name=NO13G03030|organism=Nannochloropsis oceanica|type=gene|length=4946bpback to top protein sequence of NO13G03030.1 >NO13G03030.1-protein ID=NO13G03030.1-protein|Name=NO13G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1147bpback to top Synonyms
Publications
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