NO13G03030, NO13G03030 (gene) Nannochloropsis oceanica

Overview
NameNO13G03030
Unique NameNO13G03030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4946
Alignment locationchr13:846955..851900 -

Link to JBrowse

Properties
Property NameValue
DescriptionSWI/SNF complex subunit SMARCC2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:846955..851900 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR007526SWIRM
IPR032450SMARCC_N
IPR032451SMARCC_C
Homology
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_015760824.1 (PREDICTED: SWI/SNF complex subunit SMARCC2-like [Acropora digitifera])

HSP 1 Score: 116.3 bits (290), Expect = 6.200e-22
Identity = 70/205 (34.15%), Postives = 96/205 (46.83%), Query Frame = 0
Query:  808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTV-------------VVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000
            H+      SWF  + +H +ERR +PEFF G+   KTPE+YL YR++M++A   +P+  LT TA RR LAGD  A++RV  FL+ WGLIN +V AD RP       T  S+  V  +   G                    R  + V             +   KDDWN++A                  RT  EC++ FL LP+E
Sbjct:  616 HIIIPSYASWFDYNSVHAIERRAIPEFFNGKNKSKTPEVYLAYRNFMLDAYRLNPTEYLTATACRRNLAGDVCAVVRVHAFLEQWGLINYQVDADGRPTPMGPPST--SHFHVLLDTPAGLQPLQPAKTQVQSIYNTVTTRAQVRVGCVSCFRSLFFQGLEMFKDDWNKVAEHVG-------------TRTQDECILHFLRLPIE 805          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_009443658.1 (SWI/SNF complex subunit SMARCC1 isoform X2 [Pan troglodytes])

HSP 1 Score: 115.5 bits (288), Expect = 1.100e-21
Identity = 65/196 (33.16%), Postives = 97/196 (49.49%), Query Frame = 0
Query:  808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVE----LKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000
            H+      SWF  + IH +ERR LPEFF G+   KTPEIYL YR++M++    +P   LT TA RR L GD  A++RV  FL+ WGL+N +V  ++RP +     T P ++ + +   G                      +   +++E     KDDWN+++                 +RT  EC++ FL LP+E
Sbjct:  448 HIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPT-PHFNVLADTPSGLVPLHLRSPQSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIE 629          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: KTF94105.1 (hypothetical protein cypCar_00012013 [Cyprinus carpio])

HSP 1 Score: 114.8 bits (286), Expect = 1.800e-21
Identity = 66/196 (33.67%), Postives = 99/196 (50.51%), Query Frame = 0
Query:  813 LIPS---WFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVE----LKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLEHQ 1002
            +IPS   WF  + IH +ERR LPEFF G+   KTPEIYL YR++M++    +P   LT T+ RR L GD  A++RV  FL+ WGL+N +V +++RP       T P ++ + +   G                      +   +++E     KDDWN+++                 +RT  EC++ FL LP+E Q
Sbjct:  335 IIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDSESRPLPMGPPPT-PHFNVLADTPSGLVPLHHRPPQGKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIEDQ 516          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_017385498.1 (PREDICTED: SWI/SNF complex subunit SMARCC1 [Cebus capucinus imitator])

HSP 1 Score: 113.2 bits (282), Expect = 5.200e-21
Identity = 65/198 (32.83%), Postives = 95/198 (47.98%), Query Frame = 0
Query:  808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEG------GXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000
            H+      SWF  + IH +ERR LPEFF G+   KTPEIYL YR++M++    +P   LT TA RR L GD  A++RV  FL+ WGL+N +V  ++RP +     T P ++ + +   G                             L+  +   KDDWN+++                 +RT  EC++ FL LP+E
Sbjct:  449 HIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPT-PHFNVLADTPSGLVPLHLRSPQVNSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIE 632          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: ODV83157.1 (hypothetical protein CANARDRAFT_30250 [[Candida] arabinofermentans NRRL YB-2248])

HSP 1 Score: 112.5 bits (280), Expect = 8.900e-21
Identity = 69/219 (31.51%), Postives = 99/219 (45.21%), Query Frame = 0
Query:  816 SWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPA------------------------SFSLRHTLPSYSFVEE-----------EEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000
            SWFQ   +H +E+  LPEFF G    KTP+IY  YR++M+ A   +P+  L++TAVRR L GDAGA+LRV +FLD WGLIN +V  + RP                         S+     LP    V+E            +E                     +++L+  V + K DW ++A                  +TP EC+++FL LP+E
Sbjct:  388 SWFQMRKVHKIEKHSLPEFFNGFNKNKTPQIYAKYRNFMINAYRLNPNEYLSFTAVRRNLVGDAGALLRVHKFLDKWGLINYQVDPETRPVPIEPPFTGDFTVDLDTPKGMFPFESYKPPKELPDLKKVKELMNEYSSNGSNGDEPSSKRQKIIKPDINKNWNEESLKKLLEGVRDYKSDWYKVAEHVGD-------------KTPEECIIRFLQLPIE 593          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_020627570.1 (SWI/SNF complex subunit SMARCC2-like [Orbicella faveolata])

HSP 1 Score: 109.8 bits (273), Expect = 5.800e-20
Identity = 89/321 (27.73%), Postives = 129/321 (40.19%), Query Frame = 0
Query:   36 ALFEPLKEALIEAAGEKGLDLGPIRAGDLAKLTGDLQQFMEDEFGVTAKQQGKEWLMTRIPARLFRDYSPKGPLFTILFAAYSQKALLQWRSFNFEAKGGIKREENVALFLALQRALQDEXXXXXXXXXXXXKWGPPVVVFDASVPQRVRDGLRKAVEKHGGVVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPPSLFFRLLGREQSTGRVHLHWCYYPDSYDEWLP---LEALPPSLPLDSGDSVVSGPPFVVTARFLRDVDKFNEWGNEADY 354
            ALFEP+K+ L++   +K + + P     LA LT  L QF ED FG   K   K+ L+T++P ++F DYS  G L  IL   +  K    WR F+F++    + + NV LFL +++AL++                 P V     +  R+   L+  V++H G + EE+                                                                        P   + R L R+    +V +HW YYPDSYD W+P   +E  P   P   G       P+ V AR+L D+D FNEW NE DY
Sbjct:   22 ALFEPVKQYLLKNC-KKYVQVEPPTNKILATLTAQLLQFQEDNFG---KDVSKQALLTKLPMKMFMDYSSGGSLCVILANMFKTKMEQGWRRFDFQSPS--RMDRNVELFLNIEKALKEAKLLTL-----------PQVFITPEIDPRLAVKLKDIVKRHNGAITEEKSEATHIVYGPPPPF----------------------------------------------------------PEEEWLRPLLRQDK--QVLVHWWYYPDSYDTWVPSTDIEDEPQPEPQHQG-------PWQVNARWLTDLDVFNEWMNEEDY 258          

HSP 2 Score: 97.1 bits (240), Expect = 3.900e-16
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 0
Query:  816 SWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPA 907
            ++F    +H +ERR LPEFF G+   KTPE+YL  R++M++A   +P+  LT TA RR L GD  A++R+  FL+ WGLIN +V AD RPA
Sbjct:  310 AFFSLCSVHAIERRALPEFFNGKNKSKTPEVYLACRNFMLDAYRLNPTEYLTATACRRNLGGDVCAVVRIHAFLEQWGLINYQVDADGRPA 400          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_012688065.1 (PREDICTED: SWI/SNF complex subunit SMARCC1-like, partial [Clupea harengus])

HSP 1 Score: 109.4 bits (272), Expect = 7.600e-20
Identity = 64/192 (33.33%), Postives = 92/192 (47.92%), Query Frame = 0
Query:  808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHTLPSYSFVEEEEEGGXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000
            H+      SWF  + +H +ERR LPEFF G+   KTPEIYL YR++M++    +P   LT T+ RR L GD  A++R+  FL+ WGLIN +V A++RP        LP         +G                       L+  +   KDDWN+++                 +RT  EC++ FL LP+E
Sbjct:  417 HIIIPSYTSWFDYNCVHQIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCALIRLAVFLEQWGLINYQVEAESRP--------LPMGPPPTPHSKGASAGRDWMEQETLL---------LLEALEMYKDDWNKVSEHVG-------------SRTQDECILHFLRLPIE 578          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_001641517.1 (predicted protein [Nematostella vectensis] >EDO49454.1 predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 109.4 bits (272), Expect = 7.600e-20
Identity = 90/325 (27.69%), Postives = 133/325 (40.92%), Query Frame = 0
Query:   36 ALFEPLKEALIEAAGEKGLDLGPIRAGDLAKLTGDLQQFMEDEFGVTAKQQGKEWLMTRIPARLFRDYSPKGPLFTILFAAYSQKALLQWRSFNFEAKGGIKREENVALFLALQRALQDEXXXXXXXXXXXXKWGPPVVVFDASVPQRVRDGLRKAVEKHGGVVLEEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCPPSL----FFRLLGREQSTGRVHLHWCYYPDSYDEWLPLEAL---PPSLPLDSGDSVVSGPPFVVTARFLRDVDKFNEWGNEADY 354
            ALFEP+K+ L++   +K + + P     LA L   L QF ED FG T  +      +T++P +LF+DYS  G L TIL   Y  +    WR F+F++   I R  NV +FL ++RA+++                 P V     V Q     LR  V++H G +++++                                                                       CPP L    + R L  +++ G+V +HW YYPDSYD W+P   +   P   P   G       P+ VT R+L D++K+NEW NE DY
Sbjct:   22 ALFEPVKQYLLK-NHKKYVQVEPPTNKGLATLVAQLLQFQEDNFGHTVAKPP----LTKLPIKLFQDYSANGGLCTILACVYKTRTDQGWRRFDFQSPSRIDR--NVEMFLNIERAVKEAKLLMI-----------PQVYIAQDVDQSQVAKLRDIVKRHNGNIVDDK--------------------------------------------------------------TSATHIVHACPPPLPEEDWLRPL--KKNEGQVLVHWWYYPDSYDTWVPSTDVLDEPQPEPDHKG-------PWEVTGRWLTDLEKYNEWMNEEDY 257          

HSP 2 Score: 105.1 bits (261), Expect = 1.400e-18
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 0
Query:  808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPA 907
            H+      SW+  + IH +ERR LPEFF G+   KTPEIYL  R++M++A   +P+  LT TA RR LAGD  AI+R+  FL+ WGLIN +V AD+RPA
Sbjct:  432 HIVIPSYASWYDYNSIHAIERRALPEFFNGQNRSKTPEIYLAMRNFMIDAYRLNPTEYLTATACRRNLAGDVCAIVRIHAFLEQWGLINYQVDADSRPA 530          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: OTF69437.1 (SWI/SNF complex subunit SMARCC2-like protein [Euroglyphus maynei])

HSP 1 Score: 108.2 bits (269), Expect = 1.700e-19
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 0
Query:  808 HLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARP 906
            H+      SWF  + IH +ERR LPEFF GR   KTPE+Y+ YR++M++    +P+  LT TAVRR +AGD  AI+RV  FL+ WGLIN +V  DARP
Sbjct:   85 HIIIPSYASWFDYNCIHAVERRALPEFFNGRNKSKTPEVYIAYRNFMIDTYRLNPTEYLTLTAVRRNIAGDVCAIMRVHAFLEQWGLINYQVDVDARP 182          
BLAST of NO13G03030 vs. NCBI_GenBank
Match: XP_020544348.1 (SWI/SNF complex subunit SWI3 [Pichia kudriavzevii] >KGK40689.1 hypothetical protein JL09_g85 [Pichia kudriavzevii] >ONH74301.1 SWI/SNF complex subunit SWI3 [Pichia kudriavzevii])

HSP 1 Score: 107.8 bits (268), Expect = 2.200e-19
Identity = 70/227 (30.84%), Postives = 103/227 (45.37%), Query Frame = 0
Query:  816 SWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTYRSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVPADARPASFSLRHT---------------LPSY--------------------------SFVEEEEEG--GXXXXXXXXXXXXXXXXXXXVRRLMTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLE 1000
            SWF+ S IH +ER  LPEFF G+   KTPEIY+ YR++M+ +   +P+  L++TAVRR L GD+GA+LR+ +FL  WG+IN +V  + RP      +T                 SY                           F E E EG                      +++L+  V + K+DW +IA+              G  +T  EC+++FL LP+E
Sbjct:  236 SWFELSSIHDIERESLPEFFQGQNKSKTPEIYIKYRNFMVNSYRLNPNDYLSFTAVRRNLIGDSGALLRIHKFLTKWGIINYQVNPETRPQQIEPPYTGDFIVDYDTPRGMFPFESYKPPTEFPDLSHFKSLIGNKNQNETQTKFEEGEREGEPKLKKQRIIKADINKDWSEKSLQKLVDGVSQFKNDWYKIAAHV------------GDNKTAEECIIRFLQLPIE 450          
The following BLAST results are available for this feature:
BLAST of NO13G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_015760824.16.200e-2234.15PREDICTED: SWI/SNF complex subunit SMARCC2-like [A... [more]
XP_009443658.11.100e-2133.16SWI/SNF complex subunit SMARCC1 isoform X2 [Pan tr... [more]
KTF94105.11.800e-2133.67hypothetical protein cypCar_00012013 [Cyprinus car... [more]
XP_017385498.15.200e-2132.83PREDICTED: SWI/SNF complex subunit SMARCC1 [Cebus ... [more]
ODV83157.18.900e-2131.51hypothetical protein CANARDRAFT_30250 [[Candida] a... [more]
XP_020627570.15.800e-2027.73SWI/SNF complex subunit SMARCC2-like [Orbicella fa... [more]
XP_012688065.17.600e-2033.33PREDICTED: SWI/SNF complex subunit SMARCC1-like, p... [more]
XP_001641517.17.600e-2027.69predicted protein [Nematostella vectensis] >EDO494... [more]
OTF69437.11.700e-1952.04SWI/SNF complex subunit SMARCC2-like protein [Euro... [more]
XP_020544348.12.200e-1930.84SWI/SNF complex subunit SWI3 [Pichia kudriavzevii]... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03030.1NO13G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|249487gene_9006Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03030.1NO13G03030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03030 ID=NO13G03030|Name=NO13G03030|organism=Nannochloropsis oceanica|type=gene|length=4946bp
ATGCCCTCACCCGCGCCCCCCCCCTCCGCGTTTCCTTACTCCTCCTCCTC
TCACCGTCATCCTCGCGGGGGCGGACGAGAGGGAGCGAAAGAGGACATGT
CCCCTGCACTGTTCGAGCCGTTAAAAGAGGCTTTAATTGAAGCGGCGGGG
GAAAAGGGCCTGGACCTTGGCCCTATCCGTGCAGGAGACCTCGCGAAGCT
GACAGGAGACTTGCAGCAGTTTATGGAGgtgagaaatggaagggagggga
gaagggaggggaggagagagggaaggaggggtaaattgtgtcaagagaca
cgctgacccatcacttgtccctccggccctccctccctccctctctccct
ccctccctccctctcttagGATGAGTTTGGTGTCACAGCAAAGCAGCAGG
GAAAGGAGTGGCTAATGACACGGATTCCAGCCAGGCTCTTCCGAGACTAC
TCTCCCAAGGGGCCGCTCTTCACGgtggggaggaagggagggaggggggg
ggaaagccgtgtcaaacttacactccttccttccctccctccctccctcc
ctccctccctccctcgtgcttcagATTCTATTTGCAGCCTACTCTCAAAA
AGCGCTTTTGCAATGGCGTAGCTTTAATTTCGAGGCGAAAGGCGGGATTA
AACGGGAGGAAAACGTTGCTCTCTTCCTCGCCCTCCAACGGGCTCTACAG
GACGAGGAGGGAGAGGGGGAGGAAGAGGGGGAGGGGGGAGGAAAGTGGGG
GCCTCCGGTGGTTGTTTTCGATGCCTCTGTCCCGCAGAGGGTGAGGGATG
GATTGAGGAAGGCTGTTGAGAAGCATGGAGGGGTGGTGTTGGAGGAGGAG
GGGGAGAAGGAGGTGGAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAG
GAAGGGAGGGAGGAAGGGAAAAAGGATCACCCACGTGGTGGTATGGGACC
CGGAGGAGGAAGAGGAGGAAGGGGTTGAGGAGGGGGAGGAGGAGGAGGAG
GACAAGAAGAAGAAGAAAAAGAGGGGGGCGGGGAAGACGAAGGGGCAAAC
GGAGGGGAAGCAATGgtaggtcgatagggaagggagggagggagggaggg
agggaaccctgctcgacacctatctatttagatttttcccctcatccctc
cctccctctttccctccagCCCTCCCTCCCTCTTCTTCCGCCTCCTGGGA
CGGGAGCAAAGCACTGGAAGGGTGCACCTGCACTGGTGTTACTACCCCGA
CAGCTACGACGAATGGCTGCCCTTGGAAGCCCTCCCTCCCTCCCTCCCTC
TCGACTCTGGGGATTCCGTGGTGgtacgcaccctccttccccccctcatt
cccgccctccctcccgccctccctcccctcactcgccccctcccccctcc
atccctccttccctcccccctccttccctccttccctcctcccctcctcc
agTCCGGCCCTCCCTTCGTCGTCACCGCTCGCTTCCTCCGCGACGTCGAC
AAATTCAACGAATGGGGCAACGAAGCCGACTACCTCCCTTCCTCCCTCCC
TTCCTCCCTCCCTTCCTCCCTCCCGTCCTCCTTCCCTTTCGCCTCCCTCC
GCTCGACCGCGGCCGCTCACTCCCGGCAGCGACGACACCCAGCCACGTGC
CTATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCACCCTCCATCC
CTCTTCCTCCTCCTCTTCCATCCCTGTGTCGGGCAAGAAAGAGAAGAGTC
CGAGAGGAGGAAAGGAGGGAGGGAGGGATGGCGCGCCCTTTCCCCCTCCC
TCCCTCCCTCCCTCCCCCGCCCCTCCGCATCCCAAGAAGAAGACGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGAAGGCCACTTCCCTTG
CTTTTATTTCATCCTCATCGGAGTCCCCGGTGGTGAAGGGGAGGGAGGGA
GGGAGGGAGGGCGGGCAGAAAAGAGGGAGGAACGAGGTGAGGGATGGAGG
ACAGAAGGTCAAGAAAGGGAAGGTCAACAAGGAGGAGGAAAAAGAAGACG
GGAAAGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGAGGAG
GAGGAGGAGAAGGAGGAGAGAAGGGGAAGGGGCGGTGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGCGCTGAACAAGAAAAAGATGAAGGAAGCGAGGAGGAAACAGAGGGAG
AGAGAGGGTGTAGCCGCCGTATTTGTAGGAGAAGGAGGAGGGATGGTGGA
Ggtaggaggggagggagggagggagggagggagtgagtgagggagggagg
gaggttgggaggttgggagggagtgagggagggaaggagggagggaagtc
gggagggaagtcgggagtgagggagggagggagggagggaggagggaggg
cttgcttgcgtgggtcttggaaggttggatgtagagaggagccgcaaaaa
tgaaggcactcctcactttgcctccctccccctgtcttccctccctcctt
ctttccttccttccctccttcccttcctcctttttcagATCACGACAAGC
AACACTTCTTCTTCTTTTTCTTCTTCTGTTGCTGCTGCCGGTGTTGGTGT
TGGTGTTGGTGATGGTACTGCTGCCGGACTTCACCCTCCTCCGTCGGAGG
CCCCGATACCGAGGGGGAAGGGAGGGGAGGACGGGAAGCATAGCACAAGC
CTGATTGATGTTAGAGCAGGAGGCGTAAAAATTGTCAAGgtaggtaggta
ggtaggtagggagggagggagggagggagggagggagggagggagagggt
cgtgactcactttcccctccttcattccaaacagACGGTTCACATCAAGG
AGGAGGCGAAGCAAGAGAAGGTGAAGGAAGGGGTGGAGGAAGGGGTGGAG
GAAGGGAAGAAGGAAAGAGAGGAGGCTGCAGAGGATACAATTTCTTCCCA
GCAGCAACAGCAGCAGCAGCAGTGGCAGCAGCAGCAAAAGGAGGCGAAAG
GCACTGGCTCTTCTCCTTCTTCCACACGCAGCAGTCGCACAAGCCACCTC
CGTCCCCTCCCTCCCTCCCTCCCATCCCCCCCCCCTCCCTCCGCTCCTGC
CGCTTCCCATCCCATCACCAAAAGCGGTTTTCCCTCCCTACCAACTTTCG
ACCCTGCCTACCCCTCCCTCCCCCCCTCCCTCCCTCCCGCCCTCCCTCCC
TCGTCTTTTCGCCCTCTTCCCCTCCCTCACCTGGCCTCGGGCTTGATCCC
TTCCTGGTTCCAGCCCTCCCTCATTCATCCGTTGGAAAGGCGTTGCCTGC
CGGAGTTTTTCACCGGCCGTTGCCCCTTCAAAACCCCCGAGgtaggccgt
tcatcctccttccctcccttcctctcccttccttctggtctttattcacg
tccatccctccctccctccctccctccctccctccctccctccctccatt
ccttccttcgtccagATCTACCTCACCTACCGCTCCTATATGATGGAAGC
CTCCTCCTCCTCTCCTTCCTCTCTCCTCACATACACCGCCGTCCGTCGAC
GCCTCGCAGGCGATGCAGGTGCCATCCTCCGGGTATGGCAGTTTCTGGAT
GCTTGGGGACTCATCAATGGAGAGgtacaccctttcctccgtccctctct
ccctctctccctccctccctccttccctccctctctccctccctctttcc
cttccttcgtttctggcagtttttgggtgcctgagaactcatcagcaaag
ggggtaattcccctccctcccttcctccctccctccctcccttcctccct
ccctccctccctccctccctccctccctccctccccccttccctccctcc
ctcccgccctccctccctctctccctactccgtgtgtggggttcctcaaa
gaggggcactgctcgttccctccctcccttcgtacacatatcaacttcca
ggcagcatcatcaatgtctcccttcctttctccctccctccctccctccc
tctttcagGTCCCCGCCGACGCCCGTCCAGCTTCCTTCTCCCTCCGTCAT
ACCCTCCCCTCCTACTCCTTTGTGGAAGAGGAGGAGGAAGGGGGGGAGGG
CAGGAAGGATGGAGGGATAGGAAAGGAGGAGGAGGGATGGGATGAGGAGG
AGGTCAGAAGGCTGATGACGGTGGTAGTGGAGCTAAAGGACGACTGGAAT
GAAATAGCCTCGAGATGTTCGAAAGGCGGAGAGGGAGAAGGAGGGAGGGA
GGGCGGGAGGGCGAGGACGCCGATGGAATGTCTTGTGAAGTTTTTATCGT
TGCCCTTGGAGCACCAGACAGGGGGAGGAGGAGGAGGAGGAGGAGGAAGG
GGAGGAGGAATGCTGGGCTTAGTGCGACAGCTGGCCCAGAGCATCGATCC
ACAAAgtaagggcctccatccccatcacgctgtcccttccaccgtctcct
tcctcgccctccctcccaccctccctcccttcctctgcccgtcgctcact
atctcccccccccaccctcccacctctctccccgctcccttctcagTTGT
GAGAGCCACAATCTCAGCAGCATGGGCCCAGATTCAAGCTCTTCCTCCTC
CCTCGTCCTCCACCAGCCCCTCCTTCCCTCCCTCCCTCCCTCCTCCTCTG
CTGGCCGCGGGGACGACCGTCCTGTCCTTGTTGTCGCTGCAGGCCAAAGA
GGGACAAAGGGAGGAAGAGGAGGAGGTGCGGCGACTGATGGACGACCTGA
TCGACCTGAAGTTGAAGAGGTGGGAAATGAGGGGAAAGGAGGTGGAGGAG
AGGGAGAGGATACTGGAGGAGGAGAGGGAGGCTCTAAGGAGGGAGAGGGA
AGAACTGTTTGCACGGCGGGCCCTGGCAATTGTGCAGAGGGAATGA
back to top

protein sequence of NO13G03030.1

>NO13G03030.1-protein ID=NO13G03030.1-protein|Name=NO13G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1147bp
MPSPAPPPSAFPYSSSSHRHPRGGGREGAKEDMSPALFEPLKEALIEAAG
EKGLDLGPIRAGDLAKLTGDLQQFMEDEFGVTAKQQGKEWLMTRIPARLF
RDYSPKGPLFTILFAAYSQKALLQWRSFNFEAKGGIKREENVALFLALQR
ALQDEEGEGEEEGEGGGKWGPPVVVFDASVPQRVRDGLRKAVEKHGGVVL
EEEGEKEVEGGRKGGRKGGRKGGRKGKRITHVVVWDPEEEEEEGVEEGEE
EEEDKKKKKKRGAGKTKGQTEGKQCPPSLFFRLLGREQSTGRVHLHWCYY
PDSYDEWLPLEALPPSLPLDSGDSVVSGPPFVVTARFLRDVDKFNEWGNE
ADYLPSSLPSSLPSSLPSSFPFASLRSTAAAHSRQRRHPATCLSLPPSLP
PSLPSTLHPSSSSSSIPVSGKKEKSPRGGKEGGRDGAPFPPPSLPPSPAP
PHPKKKTEGGREGGREGGRVKATSLAFISSSSESPVVKGREGGREGGQKR
GRNEVRDGGQKVKKGKVNKEEEKEDGKEEEEEEGEEEGEEEEEEEKEERR
GRGGGGGGGGGGGGGGGGGGGGGGGGALNKKKMKEARRKQREREGVAAVF
VGEGGGMVEITTSNTSSSFSSSVAAAGVGVGVGDGTAAGLHPPPSEAPIP
RGKGGEDGKHSTSLIDVRAGGVKIVKTVHIKEEAKQEKVKEGVEEGVEEG
KKEREEAAEDTISSQQQQQQQQWQQQQKEAKGTGSSPSSTRSSRTSHLRP
LPPSLPSPPPPSAPAASHPITKSGFPSLPTFDPAYPSLPPSLPPALPPSS
FRPLPLPHLASGLIPSWFQPSLIHPLERRCLPEFFTGRCPFKTPEIYLTY
RSYMMEASSSSPSSLLTYTAVRRRLAGDAGAILRVWQFLDAWGLINGEVP
ADARPASFSLRHTLPSYSFVEEEEEGGEGRKDGGIGKEEEGWDEEEVRRL
MTVVVELKDDWNEIASRCSKGGEGEGGREGGRARTPMECLVKFLSLPLEH
QTGGGGGGGGGRGGGMLGLVRQLAQSIDPQIVRATISAAWAQIQALPPPS
SSTSPSFPPSLPPPLLAAGTTVLSLLSLQAKEGQREEEEEVRRLMDDLID
LKLKRWEMRGKEVEERERILEEEREALRREREELFARRALAIVQRE*
back to top
Synonyms
Publications