NO13G01300, NO13G01300 (gene) Nannochloropsis oceanica

Overview
NameNO13G01300
Unique NameNO13G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2845
Alignment locationchr13:391460..394304 -

Link to JBrowse

Properties
Property NameValue
DescriptionDynactin p62
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:391460..394304 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005869dynactin complex
GO:0005869dynactin complex
Vocabulary: INTERPRO
TermDefinition
IPR008603DCTN4
Homology
BLAST of NO13G01300 vs. NCBI_GenBank
Match: EWM21790.1 (Dynactin p62 [Nannochloropsis gaditana])

HSP 1 Score: 370.5 bits (950), Expect = 1.100e-98
Identity = 282/692 (40.75%), Postives = 339/692 (48.99%), Query Frame = 0
Query:    1 MALSAERLLRPLFPPDGHEDGKNDHTYGEDEGTPGVKVVLADYQGWWAPLTHLFYSNASRSLVSAHPESSLEEVESFYCTNCLNYFAEAEAAASSHRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFRCGYCLWSSSKTLGLVETKPEDLAKRVMEAKA-SPQDVRFRSLVSQLRERAVEVARDRHFRGRRFIHMGG---------XXXXXXXXXXXXXXHLEDLEKKEAQ-QAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVVQARGLECVFHGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-KPSPLSFVLRLRNSLNGKVRIALVPXXXXXXXXXXXXXXXXXXXXHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDCSFGDDNINM---NVLYAYVPALGREDGREQGRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSRAWLHVVVRPPSSPLSVVGEAAVGVLLFLRLTSDRSEFSSTRGETASIVVPVCLAFTRGS 678
            MAL+AERLLRPLFP   H+D   D+ YG +EG   VKVV  DYQGWWAPLTHLFYSNAS+ LVSAHPESS+EEVESFYC++CLNYFA+AEAA+S HRCP                              + +  +GY FRCGYC WSS+ ++GL+E+ PE L +R+ + +   PQ VR+R+L+  LR+RAV +AR R    R+++                           HL DLE+KE + QAA+T   A D K TA L +++ +                        + S SAE+ D  P S  +L +L+        Q A  S  P  TS   P RR L +KR RRCR DVE GRPGILLKPKVNPLEGDSS     GKWWQKD+SA+HVLP VSV++A+GLE VF G                              G  P  LSFVLRLRN L G V++ LVP                     +                                 GD N +    NVLYA V   G E       V                      XXXXXXXXXXXXXXXXXX                                 KSRAWLHV V  P++PL +  +AAVGVLLFLR  S RSE S+ R E A I VPVCLAFTR S
Sbjct:    1 MALNAERLLRPLFPSQNHDDRILDNDYGTNEGVSDVKVVFTDYQGWWAPLTHLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCP--------RCFDCPQCTSALLIISVDEESNHEENDAGYTFRCGYCRWSSADSIGLIESTPEALIERLKKTELDDPQAVRYRALLQHLRQRAVAIARARRHHDRQYLLSAPFALPTENELDSLGVGPVRARARWHLSDLEEKEDRGQAARTR--ATDGKETAYLSTLLTEEKMGTKTAAD--------------ACSFSAEDVDRAPASWVTLRTLS--PRGPSSQTASRSLYPPLTSHSRPRRRPLCTKRVRRCRQDVEAGRPGILLKPKVNPLEGDSSWTGTAGKWWQKDSSAIHVLPSVSVIRAQGLEKVFAGRARATGVTGGGGQESDADARQWAKSHFAGTGDDPEALSFVLRLRNPLRGAVQVVLVPPPATSEGAGATTELYYLRRLPVALG------------------------------GDVNSSRNVGNVLYARVSCAGAEQAVAGEAV-------------------DLEXXXXXXXXXXXXXXXXXXLDALALRLLDGDTKMKREEGAQEVSATRVLLRRKSRAWLHVKVPVPTAPLVLNKDAAVGVLLFLRFLSHRSELSNNRKEPAFITVPVCLAFTRDS 617          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: GAX12147.1 (hypothetical protein FisN_1Hh072 [Fistulifera solaris])

HSP 1 Score: 102.4 bits (254), Expect = 5.600e-18
Identity = 106/373 (28.42%), Postives = 149/373 (39.95%), Query Frame = 0
Query:   33 TPGVKVVLADYQGWWAPLTHLFYSNASRSLVSA---HPESSLEEVESFYCTNCLNYFAEAEAAASSHRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFRCGYCLWSSSKTLGLVETKPEDLAKRVMEAKASPQDVRFRSLVSQLRERAVEVARDRHFRGRRFIHMGGXXXXXXXXXXXXXXHLEDLEKKEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVVQARGLECVFH 403
            T    V+  D+QG  APLT  F++ ASR L S     P SS+  ++S YC NCL      +      RC                                    +   + C  C W S+ ++ +VE      A +V  A+A+        L  Q++E A +VA  +     R I  G                LE LE         T E  +  K      S VE                            L+ E+ +   P     T   G   A Q Q   +  +    + L+P+   L ++RSRRCR ++  GRPGIL+KPKVNPLEGDSS+R+  G+WW+KD+SA+HV+P V VV+    E   H
Sbjct:    4 TKKTHVLYVDHQGHPAPLTECFHATASRRLSSTLQRFPPSSVTSIDSAYCPNCLTSQDLVQYCNRCQRCSVCVHSMLQIMVR----------------------DNHCVYECATCQWRSAISVPVVEN-----ASKVEIARAA------EDLCLQVKE-ARQVADHKDLFSERKIRRG--IQSLRSFDRDKDWSLEILE--------ATLETKRKEKSIRPEESKVESSLSI---------------------QRLNLEDDEDRTP-----TKFEGTIGAWQWQ---ALVRGVHRNDLLPLPVPLRARRSRRCRAELASGRPGILVKPKVNPLEGDSSLRTGHGQWWRKDSSAIHVIPRVRVVKTVYQEASIH 303          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: OEU12421.1 (hypothetical protein FRACYDRAFT_244689 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 102.1 bits (253), Expect = 7.300e-18
Identity = 104/376 (27.66%), Postives = 160/376 (42.55%), Query Frame = 0
Query:   38 VVLADYQGWWAPLTHLFYSNASRSLVSAHPE---SSLEEVESFYCTNCLNYFAEAEAAASSHRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFRCGYCLWSS-----------SKTLGLVETKP-EDLAKRVMEAKASPQDVRFRSL---VSQLRERAVEVARDRHFRGRRFIHMGGXXXXXXXXXXXXXXHLEDLEKKEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNR----SYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSV 392
            V+  D+QG  APL+  +++ ASR L S+      SS+ EV+S YC  CL+ F +A  A++   CP                               +   S   ++CG C W+S           S   G +  +  E+ +  ++    S  + R RS     + +++  + +A+D H +GRR     G                +DL+      + Q  E +Q  +    + S+ E                    +GG      S     EE D  P   PS   L+      Q       + P S  +L+P    L  ++SRRCR ++ E RPGIL+KPK+NPLEGDSS+R+  G+WW+KD+SA+ VLP V V
Sbjct:   10 VLYVDHQGHPAPLSLCYHATASRKLTSSVDRPFPSSITEVDSAYCPQCLS-FHDANTASNLGFCPKATCQLCPLCRSVSSI---------------TAKDSICFYQCGRCDWNSKICDIQTSLVTSNDNGNISLEEVENASIELLSQYKSRIEERNRSADDHFNSMQKTLIGIAKD-HVKGRRSTTSSGRYFSQAPVTKRNEN--DDLK----VWSVQALEDSQRTREENFISSISE-------------------PTGGTHIERISLDAGEEEDDDEPLFHPSFQLLSTEIILSQEN---GGNLPGSLETLLPHPIPLRPRKSRRCRAEIAESRPGILVKPKLNPLEGDSSLRTGHGQWWKKDSSAIEVLPRVRV 340          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: GAX21244.1 (hypothetical protein FisN_1Lh072 [Fistulifera solaris])

HSP 1 Score: 97.8 bits (242), Expect = 1.400e-16
Identity = 95/364 (26.10%), Postives = 148/364 (40.66%), Query Frame = 0
Query:   38 VVLADYQGWWAPLTHLFYSNASRSLVSA---HPESSLEEVESFYCTNCLNYFAEAEAAASSHRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFRCGYCLWSSSKTLGLVETKPE-DLAKRV----MEAKASPQDVRFRSLVSQLRERAVEVARDRHFRGRRFIHMGGXXXXXXXXXXXXXXHLEDLEKKEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVVQ 394
            V+  D+QG  APLT  F++ ASR L S     P SS+  ++S YC NCL      +      RCP                                   +   + C  C W S+ ++ +VE   + ++A+      ++AK + Q    + L S+ + R  E+   R F   +                     LE LE     +  Q +   ++  +     S+                              L  E+ +         T   G   A Q Q   +  +    + L+P+   L ++RSRRCR ++  GRPGIL+KPKVNPLEGDSS+R+  G+WW+KD+SA+HV+P V V++
Sbjct:    9 VLYVDHQGHPAPLTECFHATASRRLSSTLQRFPPSSVTSIDSAYCPNCLTSQDPVQYCNRCQRCPVCVHAMLQIMVR----------------------DNHCVYECATCQWRSAISVPVVENASKVEIARAAEDLCLQAKEARQVADHKDLFSERKIRR-EIHSLRSFEREK------------------DWSLEILEATLETKRKQKSSFPEESSKVESSLSI----------------------------QRLDLEDEED--------TRFEGTIGAWQWQ---ALVRGVHRNDLLPLPVPLRARRSRRCRAELASGRPGILVKPKVNPLEGDSSLRTGHGQWWRKDSSAIHVIPRVRVMK 292          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: XP_002177652.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50466.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 79.3 bits (194), Expect = 5.100e-11
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 0
Query:  311 QRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVV 393
            +RQH       + +S L+P+   L  + S R   ++EE RPGIL+KPK+NPLEGDSS+R+   +WW+KDASA+HV+P + VV
Sbjct:  277 RRQH---DRNVALSSKLLPLPTTLRFRWSLRSVPELEESRPGILVKPKLNPLEGDSSLRTGHTQWWKKDASALHVVPNMEVV 355          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: XP_002287718.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95161.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.8 bits (190), Expect = 1.500e-10
Identity = 94/381 (24.67%), Postives = 145/381 (38.06%), Query Frame = 0
Query:   33 TPGVKVVLADYQGWWAPLTHLFYSNASRSLVSAH----PESSLEEVESFYCTNCLNYFAEAEAAASSHRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYA-------FRCGYCLWSS------SKTLGLVETKPEDLAKRVMEAKASPQDV---RFRSLVSQLRERAVEVARDRHFRGRRFIHMGGXXXXXXXXXXXXXXHLEDLEKKEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQ--RQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSV 392
            +P   ++  D+     PLT  +++ ASR L S      P S+  EV+S YC  CL    +A +AAS   C                               +S   +          + CG+C WSS      S    L+E   +  A    E  A  Q +     R L   LR+R  +  +         ++M G                +D E++        T+ A     ++VL                            + + S S++  D +       T    I T +Q   Q   ++  P   S L P+     S+ SRRC  + E GR GIL+KPK+NPLEGDSS++   G+WW+KD+SAV ++P + +
Sbjct:    9 SPRGAILYVDHANHLTPLTLTYHATASRHLTSGRSDVIPPSTSVEVDSAYCPRCLT-CCDAASAASLGVCQKDITDEGSFVASCKDCPVCFAPVAISIDAVSSSASTESTTHHLVCHYICGHCRWSSQECGVTSNADKLLEYPTQTDASMEKEYVAQRQTIISSVSRELELNLRQRVNDKNKLGEDIFSSVVNMWGQKE-------------QDEERRRRMNIGSYTQRA----GSSVLGGQSWSLETLEQLLLEKKKELASPYISSDPAVSSSSDFADRID---IDTTKQQMIPTPQQTAAQKTITTTSPRFRSDLFPLPVTYRSRVSRRCIAEQEAGRTGILVKPKLNPLEGDSSLKFGHGQWWKKDSSAVQMVPRIQL 368          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: XP_008609854.1 (hypothetical protein SDRG_05890 [Saprolegnia diclina VS20] >EQC36433.1 hypothetical protein SDRG_05890 [Saprolegnia diclina VS20])

HSP 1 Score: 76.3 bits (186), Expect = 4.300e-10
Identity = 85/352 (24.15%), Postives = 138/352 (39.20%), Query Frame = 0
Query:   49 PLTHLFYSNASRSLVSAHPESSLEEVESFYCTNCLNYFAEAEAAASSHR------CPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFRCGYCLWSSSKTLGLVETKPEDLAKRVMEAKASPQDVR-FRSLVSQLRERAVEVARDRHFRGRRFIHMG--GXXXXXXXXXXXXXXHLEDLEKKEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSV 392
            PL  L++S++   LV   P  SL+E++S++C   ++     EAAA  +R      CP                                  G  Y F C +C W S     L E  P+ L   +M A    +D   F +L+S  ++ + + A     +   F  +   G               +E L++K  +++        D K  A L +                          ++S+   A++ D+V  +L S   ++ I+T  QR       Q     +L P R  L  KRS RC   + +  PGIL+KP++NP+ GDSSM      WW+K    +H +P V++
Sbjct:   14 PLAELYWSDSCNKLVCPWPTCSLQEIDSYFCRFQMDNLPSKEAAAYKNRSARTFACPDCATTLQTIKT-----------------------GDKYIFFCAHCRWDSEAI--LAEDDPDTL---MMVANTRERDDHIFDTLLSHYQQASAQHAAAHPTKPLAFGSLARFGKPHFQVKAPSTLGWKMEQLDEKLHKRSIDNVLSPTDQKLAAALRAKFP----------------------NHKSFD-CADDSDAV-AALASKKYMSTISTLHQRYRCNPLLQSRDVPALYPSRPDLRVKRSWRCVEAMAKNNPGILVKPQINPMTGDSSMVVS-ASWWKKATLGIHFVPNVTI 312          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: XP_002999101.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69247.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 75.1 bits (183), Expect = 9.600e-10
Identity = 100/390 (25.64%), Postives = 151/390 (38.72%), Query Frame = 0
Query:   35 GVKVVLADYQGWWAPLTHLFYSNASRSLVSAHPESSLEEVESFYCTNCLNYFAEAEAAASSHR------CPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFRCGYCLWSSSKTLGLVETKPEDLAKRVM--EAKASPQDVRFRSLVSQ---------LRERAVEVARD---RHFRGRRFIHMGGXXXXXXXXXXXXXXHLEDLEKKEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSV----VQARGLECV 401
            GV V  A   G  AP++ LF+S     LV   P  S+EE ES+YC N L      EA+   +R      CP                                     Y F CG+C W S + LGLV+  P+ L    +  E +A+ +DV F++L S          L +   E+ R+   + FR +R   MGG               L  +++KE Q   Q     Q  + T  L ++  Q                     G      + E+   +  +L     +  ++T  QR       Q      L P R LL  KR+ RC   ++ G  GIL+KP+++P+ GDSS+      W++K   A H +P ++      +  G +CV
Sbjct:    9 GVCVRYACKCGHLAPVSSLFFSETCEKLVCRLPRCSVEEFESYYCGNLLVNLPSKEASMYQNRSSRCFSCPTCETALSTAIHE-----------------------QRYFFLCGHCRWDSLE-LGLVDDDPDALIMTAITRERQAAHEDV-FQTLHSHYATLSSLQLLADSMKELQREHQMKKFRLQRMSEMGGWKYDQA---------LAKVQEKE-QWLLQQRREHQWPELTKQLAALQIQ---------------------GTSWGQDTPEKTREMLENLSQKREMGEVSTLHQRL-LNPLDQSRDADKLFPSRPLLRVKRTWRCVESIKRGTAGILVKPQISPMSGDSSLPVS-ASWFKKANLAAHYVPVITFQRLPYRVDGTDCV 340          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: EJK59907.1 (hypothetical protein THAOC_19812 [Thalassiosira oceanica])

HSP 1 Score: 74.7 bits (182), Expect = 1.300e-9
Identity = 87/370 (23.51%), Postives = 148/370 (40.00%), Query Frame = 0
Query:   38 VVLADYQGWWAPLTHLFYSNASRSLVSAH----PESSLEEVESFYCTNCLNYFAEAEAAASSHRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFR---CGY-------CLWSSSKTLGLVETKPEDLAKRVMEAKASPQDVRFRSLVSQLRERAVEVARDRHFRGRRFIHMGGXXXXXXXXXXXXXXHLEDLEKKEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVVQ 394
            V+  D+ G   PLT  +++ ASR L S      P S+  EV+S YC   L  F +A +AAS +                                   + G+  A R   C Y       C W +S+  G+V    + L     EA     +VR  +++ ++ ++     ++R     +   +G                 E+  K+      Q     +     A+  S++++                      + S + + E H      LP+   +         Q + ++  P   + L P+     ++ SRRCR ++  GR GIL+KPK+NPLEGDSS+R+  G+W++KD+SA  V+P V +V+
Sbjct:    4 VLYVDHNGHLTPLTLAYHATASRHLSSGRSDVIPPSTKVEVDSAYCPRTLQ-FCDAASAASGN-----------LPHKDGAGPKDCPVCFGPVCISIDETGADDAIRKLVCQYACTTGKQCGW-TSRECGVVVCSDQLLECENDEASDQDLEVRRSAVIDEVTKKLEACLKERIDERNK---LGDSIFESIVNMWNKREQTEERRKRMISVTPQQVSHDESWSLEALENSLLDKRKQLESPYIFTK----------DDSVAETNEIHQPEMQLLPTAAQV-------AAQMSITTRTPLRRADLFPLFVPYRARVSRRCRAELAAGRTGILVKPKLNPLEGDSSLRTGHGQWFKKDSSATQVVPRVQIVR 340          
BLAST of NO13G01300 vs. NCBI_GenBank
Match: CCA15664.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA16272.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.9 bits (180), Expect = 2.100e-9
Identity = 87/374 (23.26%), Postives = 142/374 (37.97%), Query Frame = 0
Query:   45 GWWAPLTHLFYSNASRSLVSAHPESSLEEVESFYCTNCLNYFAEAEAAASSHRCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSDGGSGYAFRCGYCLWSSSKTLGLVETKPE-DLAKRVMEAKASPQDVRFRSLVS-------QLRERAVEVARDRH----------FRGRRFIH------MGGXXXXXXXXXXXXXXHLEDLEK--KEAQQAAQTTEVAQDVKRTAVLYSMVEQXXXXXXXXXXXXXXXXXXXSGGNRSYSLSAEEHDSVPPSLPSLTSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGRPGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVV 393
            G   PL+ LFYS     +V      S++E ES+YC N L  F   EA    +R                                  +    Y F C +C W S+ T+ L+E  P+  L   +   + +PQ+  F +L+S          E      RDRH          F G +  H      +                H+ED +K  ++A +  Q  E+ Q +   A   +                              + S E++     SL  L+ ++  +  +QR       Q  +   + P+R  L +K++ RC   +++G  GIL+KP+++PL GDSS+    G W++K   AVH +P ++ V
Sbjct:   16 GEMVPLSLLFYSTLCHKIVCRKSCCSVQEFESYYCANLLLNFPSKEANMYQNRSSRSFACATCTSILSTVF---------------DETIQKYYFLCPHCRWDSASTVNLMEDDPDLLLMSTIARERENPQEDIFNALISFHQSNMQSSMENPTHYDRDRHSFASEKRSASFLGLQRDHEKVQMRLKKSFERGVWRMELLMEHVEDRQKHLEDAWKEIQCNELDQRLSSYAKTVT------------------------------NASDEQNLKHIGSLAQLSDMSAFSNLKQR-FLAPLEQYRNVVDMYPIRPRLRTKKTWRCVESIKKGSAGILVKPQISPLSGDSSL-PVPGTWFKKATLAVHHIPMITFV 342          
The following BLAST results are available for this feature:
BLAST of NO13G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
EWM21790.11.100e-9840.75Dynactin p62 [Nannochloropsis gaditana][more]
GAX12147.15.600e-1828.42hypothetical protein FisN_1Hh072 [Fistulifera sola... [more]
OEU12421.17.300e-1827.66hypothetical protein FRACYDRAFT_244689 [Fragilario... [more]
GAX21244.11.400e-1626.10hypothetical protein FisN_1Lh072 [Fistulifera sola... [more]
XP_002177652.15.100e-1148.78predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002287718.11.500e-1024.67predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_008609854.14.300e-1024.15hypothetical protein SDRG_05890 [Saprolegnia dicli... [more]
XP_002999101.19.600e-1025.64conserved hypothetical protein [Phytophthora infes... [more]
EJK59907.11.300e-923.51hypothetical protein THAOC_19812 [Thalassiosira oc... [more]
CCA15664.12.100e-923.26conserved hypothetical protein [Albugo laibachii N... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001765NSK001765Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01300.1NO13G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672318gene_6880Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100065g15gene8635Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01300.1NO13G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01300 ID=NO13G01300|Name=NO13G01300|organism=Nannochloropsis oceanica|type=gene|length=2845bp
ACTCCATACCAGCCTACATTGTCTTATTAGTTACCTGCTACCACATATGG
CCCCTCCTCCCCTTCCTGCTAACCCCGCTCATCCGGCTCATCCTGCTCGT
CCTCCTCTCCCCCTCCTCGTCCTCCCCATCTTCACCCTCCTCCTACTCCT
TCTCCTCGTCCTTGTACTCGTCCTCGTCCTCACCCAACACAACGACTCAC
CCAATTTCCTTGCATGGCCTTCGACATTTCCCATGGCGCACATGTAGCTC
CCGGGAGCTGTGTTCAGCACACTGCTGACACCCCGGTGTCTTGCATCGAT
TGCCACCTCCGTGTTCATACATATCCCTTCCTTACCCGTCCCCGAGAGCT
AGCTGTATTCAGCACTCTGCTTGCATCCCGGTTTCTCGCATCGATTGCCA
CCTCCATGTTTTGTGCCCTTTCCCTCCAATAATAAACATATAGGAAAAAG
GCTAGCGCTTCGCATCATGATGATCGCCAAATTCTACTCACAATTCCGGC
GCACATCAAACTCCAAAAACTCTATTTGTGAAGCTGTCTGCAAGTGAGGC
CTGCCTCACTATCCTTATCGTTCTACCTCTCCTCCCGCAACCCGAGATCT
TTCACACACCCATCCACAGACCAACCTCCCCATCCCCCTCATGGCCCTGA
GCGCCGAGCGCCTGCTGCGGCCTCTCTTCCCTCCCGATGGCCACGAGGAC
GGGAAAAATGACCACACCTACGGGGAAGACGAGGGTACGCCGGGTGTTAA
GGTGGTGCTGGCGGACTATCAAGGGTGGTGGGCGCCCTTAACACACTTGT
TTTACAGCAATGCCTCGCGATCCCTGGTGAGCGCGCATCCTGAAAGCAGC
CTGGAGGAAGTCGAGTCGTTTTACTGCACGAATTGCTTAAACTATTTTGC
CGAGGCGGAGGCTGCTGCATCATCTCACCGTTGTCCACAGTGCTTTGACT
GTCCCCAGTGCAAGAGCGCATTGGTCATCATGCCTGTGGCCGCGGACAAG
GGCGAGGAGGGAAAGAGCGGTGAGACTAATAGTGATGGTGGAAGCGGCTA
CGCCTTCCGATGTGGATACTGCCTATGGTCATCTTCAAAGACTCTGGGGT
TGGTTGAAACCAAGCCTGAAGATCTGGCAAAGAGAGTGATGGAGGCTAAA
GCTTCTCCTCAAGACGTCCGCTTTCGTTCGTTGGTAAGCCAGCTCCGAGA
GCGCGCGGTGGAGGTGGCGAGAGACCGTCACTTTCGAGGGCGTCGATTTA
TTCACATGGGTGGCGAAGAAAAAGCAGGGGGGAATGGAGGAGGTGGACGA
CGGTGGCATTTGGAGGACTTGGAGAAGAAGGAGGCGCAGCAGGCAGCACA
GACAACAGAAGTAGCCCAGGACGTGAAACGAACTGCAGTTTTGTACAGTA
TGGTTGAACAAGAGGAGGAACAGGACAAGGGAAAGGGTAGCGACAGCAAC
AGCAGTATTGACAGTAAAAGTGGTGGTAACCGGTCGTATTCTCTCTCGGC
CGAAGAGCACGATTCTGTCCCTCCTTCCCTCCCTTCTTTGACCTCTCTCA
ACGGCATCACCACAGCAGAGCAACGTCAACACGCCTGCAGCTCCCACCAG
CCTTCATCTACCTCCTCCCTAATCCCTATGCGCCGTCTTCTAACGAGCAA
ACGCTCACGGCGGTGTCGAGTGGACGTCGAAGAAGGAAGACCCGGTATCT
TGTTGAAGCCTAAGGTCAACCCCTTGGAGGGGGATTCGTCGATGAGAAGT
CACGTGGGAAAGTGGTGGCAGAAGGACGCAAGTGCTGTGCATGTGTTACC
GTTTGTAAGTGTCGTGCAGGCGCGGGGGTTGGAGTGTGTTTTTCATGGAG
GGGGAGAAGGAGGAGAAGAAGGAAGAGAAGAAGGAGAAGGAGGAGGAGGA
AGAGAAGAAGAAGAAGGGGGAGAAGGGAGCAGCAGTAGGGGTAAGCCCAG
CCCTCTCTCCTTCGTTCTTCGTCTGCGAAATTCGCTCAATGGCAAAGTTA
GAATTGCACTTGTCCCACCTCCTACTCCGCCATTAGAGGGCAGCAGCAGC
AGCAGCACCATGCCTTACTACCTCAGGCATCTATCGGTCGCTTTGGGTAG
CAGCTTCAGTAGCAGCAGTAGCAGCAGAAGCAGCAGTAGCAGCGGTACTT
GTAGCAGTAGTCGTACACGTGATTGTAGTTTTGGCGATGACAATATCAAC
ATGAATGTACTTTATGCCTACGTGCCTGCATTGGGCCGCGAGGATGGGAG
GGAACAAGGGAGGGTGGAGGAAGGAGAGGAGTTGGAGCTCGAGGCTTGTG
AAGACGAGTATTTGGAGGACGAGAAGGTGGATGAGGATCAAGACACCTTG
GACATGCTTGCATTACAAATGTTGGAAAGACAGGAATTGGAGGAGAGCAA
TAACAATAGCAGTAGCACTAGCAGTAGCAGTAGCACTAGCAGTAGCAGCA
GCAGCAGTAGCAGCAGCAAGATGTTGTTGCAACGAAAATCGCGTGCTTGG
CTTCATGTGGTGGTGAGGCCACCGTCGTCCCCTCTTTCGGTGGTGGGCGA
GGCAGCTGTGGGGGTGTTGCTGTTTTTGCGGCTTACGAGCGACCGCAGTG
AATTTAGCAGTACCCGAGGGGAGACTGCTTCGATAGTTGTGCCTGTCTGT
CTGGCCTTCACGAGGGGGAGCACGGAAAACACACCGGAAGGTGATTTTGT
AGGACACCTGACACGATTAGGCTTAGAGTAAAGGAACGGAGAAGGAAGAA
ATAAAAGCCAAACAGCCATGTCGGAGCGAGGCTGCGACATGTGAATTAAG
AGACGATAAGGACAAAGATGGAAATAAACCAAAAAGTGTGTGGTG
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protein sequence of NO13G01300.1

>NO13G01300.1-protein ID=NO13G01300.1-protein|Name=NO13G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MALSAERLLRPLFPPDGHEDGKNDHTYGEDEGTPGVKVVLADYQGWWAPL
THLFYSNASRSLVSAHPESSLEEVESFYCTNCLNYFAEAEAAASSHRCPQ
CFDCPQCKSALVIMPVAADKGEEGKSGETNSDGGSGYAFRCGYCLWSSSK
TLGLVETKPEDLAKRVMEAKASPQDVRFRSLVSQLRERAVEVARDRHFRG
RRFIHMGGEEKAGGNGGGGRRWHLEDLEKKEAQQAAQTTEVAQDVKRTAV
LYSMVEQEEEQDKGKGSDSNSSIDSKSGGNRSYSLSAEEHDSVPPSLPSL
TSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGR
PGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVVQARGLECV
FHGGGEGGEEGREEGEGGGGREEEEGGEGSSSRGKPSPLSFVLRLRNSLN
GKVRIALVPPPTPPLEGSSSSSTMPYYLRHLSVALGSSFSSSSSSRSSSS
SGTCSSSRTRDCSFGDDNINMNVLYAYVPALGREDGREQGRVEEGEELEL
EACEDEYLEDEKVDEDQDTLDMLALQMLERQELEESNNNSSSTSSSSSTS
SSSSSSSSSKMLLQRKSRAWLHVVVRPPSSPLSVVGEAAVGVLLFLRLTS
DRSEFSSTRGETASIVVPVCLAFTRGSTENTPEGDFVGHLTRLGLE*
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Synonyms
Publications