NO13G00930, NO13G00930 (gene) Nannochloropsis oceanica

Overview
NameNO13G00930
Unique NameNO13G00930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1764
Alignment locationchr13:300219..301982 +

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Properties
Property NameValue
DescriptionTB2/DP1/HVA22-related protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:300219..301982 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO13G00930 vs. NCBI_GenBank
Match: GAX93745.1 (Hypothetical protein PINS_001662, partial [Pythium insidiosum])

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-7
Identity = 43/144 (29.86%), Postives = 80/144 (55.56%), Query Frame = 0 
Query:   34 MLKMVDLKMEKHPALTLRPQLLELEKKTNVPAPALFIIGSSLSVLILVLILSMEGVALAAGFTYPLLGSLKAIKMSEPVVMKFFIKYFLLYSLLNLSDTYLPI-FPSLPLYYIFKTLFLLWAFNPKTQGANIIY-TALRPFLLP 176
            M K+++ K      L    +++ELEK+T V    +F+ G++L+ ++L +I   E +   AGF YP   S KA+          ++ Y+++Y+  NL++    + F  +P Y+  K  FL+W ++P T G+N+IY   ++P++ P
Sbjct:    1 MDKVLEYKENISKRLERYEKIVELEKQTGVDKFFIFLAGAALTGILLFVIGGAELITNLAGFIYPAYMSFKALSTPGTEDDTQWLTYWVVYAFFNLTEEVTDVLFSWIPFYFFIKIAFLVWCYHPSTVGSNVIYQNLIKPYVHP 144
The following BLAST results are available for this feature:
BLAST of NO13G00930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
GAX93745.13.400e-729.86Hypothetical protein PINS_001662, partial [Pythium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00930.1NO13G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|116729gene_6917Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100815g2gene8669Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00930.1NO13G00930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00930 ID=NO13G00930|Name=NO13G00930|organism=Nannochloropsis oceanica|type=gene|length=1764bp
AGATCACCCGAAAACTTTTCGAAGCAAGCATCATGGCGAGGCCCCAGGCC
GGCAGCAGCAGCAGCAGCAGCACTGCCGGCGGCGACCACGGTCCAACGCT
CGTGCAAAAGCTCGTGTTGCTCAAAGACAATATGCTGAAAATGGTCGATC
TCAAAATGGAGAAGCATCCTGCGCTGACCCTCCGTCCTCAGTTGCTTGAG
CTTGAAAAAAAGACCAACGTGCCTGCCCCTGCCCTCTTCATTATTGGGAG
CTCCCTGTCGGTTCTAATACTTGTCCTCATTCTCAGCATGGAAGGTGTCG
Cgtaagtgaatgggcatgctattgaatgatttttatgtgtctgtatctat
ctggctgcgcgcctcgagactatgaggatatggaacataatcacgcttcg
ttacatccagtcccctttttttaatgaagctgctgctttctcgactacga
actacttcataagtactgcctaagtctccatgctttggtacttactgcct
acccataatccaaacaaccaacagCCTCGCCGCGGGGTTCACCTACCCCC
TCCTGGGCTCCCTTAAAGCCATCAAGATGTCTGAGCCCGTGGTCATGAAA
TTCTTCATTAAATACTTCCTTCTCTACTCCCTCCTCAACCTCTCCGACAC
CTACCTCCCCATCTTTCCCTCCTTACCCCTCTACTACATCTTCAAGACCC
TCTTCCTCCTCTGGGCCTTCAACCCGAAGACACAAGGCGCCAACATCATC
TACACCGCCCTACGCCCCTTTCTCCTTCCACGCCTCGGCATCGCCATACG
AGCCGCGACTGCTGAAGCCTCCGGGCAAGGAGGACAACATCTCAAAAAGA
GCAAAAAGGGCGAGAAGGCCGGAGGGGAGCTAGTGACGGCTATGGTCGGG
ACCGAGGGGATCAGTGCCACTACCGCCACCAGTGGCAGCAATAGCAGCAG
CAGCAGCAGCAGTGGTGGGGAGAGTCCGACAATTACATTGCGGATTGAGC
TCGCTGCACGGGGACTGGAAATGCCTGCAGAACCCGAGCGTCTCGATACC
CTGTGTCAGCTTCGCATCTTGCCGGCGGGACTAAAAAGAGGAGGAGGAGG
AGGAGGAGGAGCAGGAGGAGCAGGTAAAGACAAAGCGGAAAGGAAACCGG
CGTTGGACGAGGGCCAGTGGTACAAGTCGCGTTTACACACCTCCCAGCCT
CAAGACGCGCCTGATTGGAGGAATGATCCTCAATTCTTACGAGTGCCGAC
CCTCGATGACAATGTTTTGGAGGTTTTGGTCGTGAACAAGATGAGCTGGA
AAGATCAACCGTTGGGGAGGGTGAGACTGCCGTTAAAAGGGTTAACGTTT
CCCGTGGACACGACGTTGCCCCTGGAGGCCCCTCATAAGGCGGAGCTGGC
GGAAGAAGGAGCCGGGGGGGATGATGGGGAGGAAGGGGGGATGCAGGGGG
AGTTGGAGATTCACTTGGAGTTGGCCTAGAGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGTAGGCACCGAAGGCAACAACGACAACTTAATACA
ACCGAATGTCTTTTCTTGGGGCTGGTCTAGGAGGGAGAGGTTGATGGATG
GATGGAGCGAGGAGGAGGAGGGGGAGGGTGAGGAAGGGTGCGTCGGTGTG
AGTGCACGAAGTCAGAAAGACATGAAAGAGTGTCAGTGGAGAGAGCGTTG
TGGGAGTTTCCGTCAGAAGGCAAGTCGAAAAAAAGATAATTGTTTGAAAC
AAAATATGCGCTCA
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protein sequence of NO13G00930.1

>NO13G00930.1-protein ID=NO13G00930.1-protein|Name=NO13G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MARPQAGSSSSSSTAGGDHGPTLVQKLVLLKDNMLKMVDLKMEKHPALTL
RPQLLELEKKTNVPAPALFIIGSSLSVLILVLILSMEGVALAAGFTYPLL
GSLKAIKMSEPVVMKFFIKYFLLYSLLNLSDTYLPIFPSLPLYYIFKTLF
LLWAFNPKTQGANIIYTALRPFLLPRLGIAIRAATAEASGQGGQHLKKSK
KGEKAGGELVTAMVGTEGISATTATSGSNSSSSSSSGGESPTITLRIELA
ARGLEMPAEPERLDTLCQLRILPAGLKRGGGGGGGAGGAGKDKAERKPAL
DEGQWYKSRLHTSQPQDAPDWRNDPQFLRVPTLDDNVLEVLVVNKMSWKD
QPLGRVRLPLKGLTFPVDTTLPLEAPHKAELAEEGAGGDDGEEGGMQGEL
EIHLELA*
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Synonyms
Publications