NO13G00460, NO13G00460 (gene) Nannochloropsis oceanica

Overview
NameNO13G00460
Unique NameNO13G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3260
Alignment locationchr13:155565..158824 +

Link to JBrowse

Properties
Property NameValue
DescriptionIntegrin alpha-2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:155565..158824 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
GO:0008305integrin complex
Vocabulary: INTERPRO
TermDefinition
IPR013517FG-GAP
IPR013519Int_alpha_beta-p
IPR000413Integrin_alpha
Homology
BLAST of NO13G00460 vs. NCBI_GenBank
Match: PCH69432.1 (hypothetical protein COC01_01400 [Bacteroidetes bacterium])

HSP 1 Score: 159.5 bits (402), Expect = 4.100e-35
Identity = 150/454 (33.04%), Postives = 218/454 (48.02%), Query Frame = 0
Query:  290 VAFKRIGAMNVDFNLPISPGDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTA---VATLGDLDTDGFSDIAVGAPFQE----ETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVG--HRNGCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAM-DVDRDGGWDLLVGSRGLNQRTQDEGASFVCYMDGVRGGLTGWEQVAS-QSGVLVPVQPGEQFGAAISVLDDPSRNPSSLIFVGAPGGCMDAVG-GAVYVL 732
            V+ ++I      F   +   D FGSS++   P GDLD +     +AVGA  D       GA++IL L N   T+  + KI   EG   G       FG A   ++ +GDLD DG +D+AVGA        + G V+ILFL   G+V  + KI  SD  G                    G  FG S+  I DL+ DGV DL VG   D D       GG  R      GA++ILFMN +GTVK ++KIS+  G    G    DRFG +++ +G    +G   IAVGA      G+  GAV++L L   G VK  + +  A      G+        +  L   D+FG++V  + D D DG  DLLVG+R  +    D GA ++ +++   G +   ++++S + G   P+  G+QFG +I+++ D +   +  + VGA          GAV+VL
Sbjct: 1653 VSHQKISDTEGGFTGILDNTDFFGSSIA---PLGDLDGD-GVDDIAVGALFDDDGAFNAGAIWILFL-NADGTVKAHQKISNTEGGFTGTFSSKDLFGIAAAPISCMGDLDGDGVADLAVGADXXXDGGLDKGAVWILFLNTDGTVKGHQKI--SDTQGNFTAFFN-------------GKRFGQSVTCIGDLDSDGVPDLAVGMPRDND-------GGGDR------GAVFILFMNTNGTVKSYQKISSTQGGFGNGLTNADRFGNAISSLGDLDNDGVPDIAVGAFLDSDLGYRKGAVWILFLNANGTVKAKQKIDQA-----QGN-------FTGVLDIKDFFGASVETIGDFDADGNNDLLVGARFDDDGGADRGAVWILFLNS-NGTVKSHQKISSTEGGFAGPLNNGDQFGRSIALIGDINGGGTPDLAVGANXXXXXXXNRGAVWVL 2060          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: OYT11160.1 (hypothetical protein B6I18_05305 [Bacteroidetes bacterium 4572_112])

HSP 1 Score: 159.1 bits (401), Expect = 5.400e-35
Identity = 132/417 (31.65%), Postives = 190/417 (45.56%), Query Frame = 0
Query:  290 VAFKRIGAMNVDFNLPISPGDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQEE----TGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVGHRN--GCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAM-DVDRDGGWDLLVGSRGLNQRTQDEGASFVCYMDGVRGGLTGWEQVASQSGVLVPVQPGEQFGAAIS 700
            V +++I     +F   +S GD FG S+  +   GD++ +  T    V A GD       GA+++L + N   T+ +Y KI        G       FG+  A +GD + DGF D+AVGA + ++     G +Y+L L   G+V    KI  +   GG                L     FG  IANI DLNGDG+ DL VG+  D D       GG  +      GA++ILFMN DGTV +  KIS   GN        D FG SV ++G  N  G   +AVG+ F D  G E GA+Y+L +   G V  +  +S                  S  L S D FG ++A + D+D DG  D+ VG+   N    D GA ++ Y++      +  +   +  G    +  G+ FG A+S
Sbjct:   29 VNYQKISNTEGNFGNNLSAGDSFGHSLDSI---GDINGDGVT-DAIVTAFGDDQMGADMGALYVLKM-NIDGTVKSYTKITKNLNGFTGNIESGDIFGSGFAAIGDYNNDGFYDVAVGAEYDDDGGPWNGAIYLLSLDTSGNVLSNQKISATT--GG------------FTGVLTGSPAFGTDIANIGDLNGDGITDLAVGSRRDND-------GGSKK------GAVWILFMNADGTVNHQSKISNLQGNFTANLDIEDYFGVSVEYLGDYNNDGYIELAVGSHFDDDGGAEKGAIYILSIDTNGLVVNYSKISDMSAG------------FSGVLNSGDKFGISIAKIGDLDNDGVVDIAVGAYRDNTAGNDAGAFYILYLNANGTVKSHIKITENFDGFNGDLDAGDLFGMALS 401          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: PHS68081.1 (hypothetical protein COB12_02365 [Flavobacterium sp.])

HSP 1 Score: 151.4 bits (381), Expect = 1.100e-32
Identity = 126/378 (33.33%), Postives = 182/378 (48.15%), Query Frame = 0
Query:  291 AFKRIGAMNVDFNLPISPGDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQ----EETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVGHRN--GCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAMDVDRDGGWDLLVGSRGLNQRTQDEGASFV 663
            +F++I A+  +FN  +   D FG S+S L   GD++ +   +++AVGA  D     R GAV+ILSL   G  + +Y KI   +G   G    +  FG+ +A +GDL+ DG  DIAVGA       +E G V++LFL    +V  + KI  SD  G                 L+  D FG S+ NI DL+ DGV DL VGA  D D       GG      I  GA+YILFMNIDGTVK ++KIS   G+     +    FG S+      N  G T I +G    +G    +G  Y+L L   G V  F+  S   +                 L   D+FG +V+ M ++    +  ++G+ G ++    +GA++V
Sbjct:   95 SFQKISAIEGEFNGQMEEWDYFGRSLSYL---GDINSD-GFIEIAVGAEYDGDGGYRHGAVWILSLTESG-NVNSYQKISDTQGGFTGVLDVWDVFGSDIANIGDLNNDGNIDIAVGARRDGDGGDERGAVWVLFLNSDFTVNSHQKI--SDTQG------------DFEAPLSYKDYFGGSVTNIGDLDNDGVIDLAVGAYRDND-------GG------INKGAVYILFMNIDGTVKAYQKISETEGDFNETLEEDSLFGVSIDLTQDINGDGKTEIIIGCGNYNGQNDRIGFFYILNLNSDGKVDSFQKYSDGLMG------------FDGELVEGDFFGYSVSTM-IEDGLNYSFIIGAFGDSENGYRKGAAWV 427          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: WP_040251807.1 (T9SS C-terminal target domain-containing protein [Psychroserpens mesophilus])

HSP 1 Score: 150.6 bits (379), Expect = 1.900e-32
Identity = 134/378 (35.45%), Postives = 184/378 (48.68%), Query Frame = 0
Query:  292 FKRIGAMNVDFNLPISPGDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQE----ETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVG--HRNGCTVIAVGAP-FADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAMDVDRDGGWDLLVGSRGLNQRTQDEGASFV 663
            + +IG  +  F+  +   D FG+S+S L   GDLD +  T ++AVGA  D     R GA++ILSL N G T+ ++ KI   EG   G    +  FGT + +LGDL+ DG +DIAV A        E G V+ILFL    +V  Y KI  S   GG                L I D FG S+ NI DLN DGV DL VGA  D D       GG  +      GA+YILF+N DGTV  H+KIS   G           FG S+A V   + +G   I VG+  + +G     G+ Y++ L Q G V  FE     Y     G         +  L+  +YFG +V+++  +  G   L+VG+ G ++    +GA +V
Sbjct:   98 YTKIGNNSGGFSGVLEEWDIFGASISYL---GDLDGDGKT-EIAVGAEYDGDGGYRHGAIWILSLNNDG-TVYSHQKISSVEGSFGGSLDVWDVFGTDIESLGDLNGDGHTDIAVAARRDGDGGLEKGAVWILFLNADFTVNNYQKI--SSTSGG------------FTGTLDIEDSFGGSVCNIGDLNNDGVIDLAVGAYRDDD-------GGFNK------GAVYILFLNSDGTVSSHQKISETVGGFTDTLSQFSHFGKSIANVMDINEDGKKEILVGSSGYVNGTNENAGSFYIINLNQDGTVDSFE----KYATNLNG--------FNENLSEDNYFGFSVSSVG-NLGGQLSLVVGAYGDSENGFQKGAVWV 430          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: PCK00187.1 (hypothetical protein COA31_25430 [Flavobacteriales bacterium] >PCK03755.1 hypothetical protein COA31_13250 [Flavobacteriales bacterium])

HSP 1 Score: 150.2 bits (378), Expect = 2.500e-32
Identity = 127/366 (34.70%), Postives = 175/366 (47.81%), Query Frame = 0
Query:  309 GDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQE---------ETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVG--HRNGCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAM-DVDRDGGWDLLVGSRGLNQRTQDEGASFV 663
            GD FGSS++ +   GDL+ +   + +AVGA  D      +GAV++L L   G TL NY KI    G   G     S FG+AV+ LGD+D DG +DIAVGA               G V+ILFL   G+V  + K+  S   GG                L I + FG ++A I DLN DGV D+ VGA  D D       GG  R      GAI+ILFM  DGTV  H+KIS  +G         D FG+S+  +G    +G   + VGAP  D  G + GA +LL L   G VK  E +                   S  +++ D FG +VA + ++ ++G  ++ VG+   +    D GA ++
Sbjct:  125 GDAFGSSIANI---GDLNGD-GIIDIAVGAGLDDDGATDKGAVYVLFLDTNG-TLKNYQKISDTAGGFTGSMLSNSLFGSAVSGLGDMDGDGINDIAVGAMRDHNGEGVLNAIRKGAVWILFLDTNGTVQSHTKVASSS--GG------------FTGTLTINNRFGAALATIGDLNEDGVVDIAVGANRDAD-------GGLSR------GAIWILFMKSDGTVLSHQKISDTAGGFTGTIDSLDLFGSSITSLGDFDGDGNPDLLVGAPLDDDGGADRGAFWLLYLKLDGTVKENEKICDTLTA------------FSGVISNGDRFGESVATINNLQQNGEINIAVGAPFDDDGGVDRGAVYI 446          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: WP_095514913.1 (hypothetical protein [Rubrivirga sp. SAORIC476] >PAP81685.1 hypothetical protein B1759_10320 [Rubrivirga sp. SAORIC476])

HSP 1 Score: 146.4 bits (368), Expect = 3.600e-31
Identity = 151/460 (32.83%), Postives = 211/460 (45.87%), Query Frame = 0
Query:  285 MRVVFVAFKRIGAMNVDFNLPISPGDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQ----EETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVG--HRNGCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSA-VAAMDVDRDGGWDLLVGSRGLNQRTQDEGASFVCYMDGVRGGLTGWEQVASQS--GVLVPVQPGEQ-------------------FGAAISVLDDPSRNPSSLIFVGA 717
            +R   V  + I A++  F   ++ GDRFG S + L   GDL  +  T ++AVGA GD       GAV++LSL + GT    +   +PG     G A      GTA+A++GDLD DG  ++AVGA       E  G V+ILFL   G V    KI  S   GG                 A GD FG S+  + DL+GDG+ DL VG   D D       GG  R      GA++ILF+N DGTV+  ++IS  +G         D FG +VA VG    +G   +AV A   D      GAV++L L   G V+  + +S     A  G           PL   D FGS+ VA  D+D DG  DL VG+   +    + GA ++ ++   R G     Q  S++  G + P Q G++                   FG+ +S    P+R  + ++F GA
Sbjct:   15 VRAQVVRSQTISAVDGGFPGTLADGDRFGVSAAAL---GDLSGD-GTAELAVGATGD----AGTGAVWMLSLNSDGTVRDGFAIRLPGTD--PGDA-----VGTALASVGDLDGDGVPELAVGADRDDDGGENRGAVWILFLDATGEVRSVQKI--SATAGGLTDPP------------ADGDLFGHSVTALGDLDGDGIPDLAVGG-DDADD------GGPNR------GAVWILFLNADGTVRQTQRISDTAGGFEGILDDDDLFGQAVAGVGDLDGDGTPDLAVAASLDDDGADGQGAVWVLFLKPDGTVRDHQKIS-----ATAGG-------FGGPLDPFDIFGSSLVATGDLDGDGVPDLAVGANRDDDGGPERGAGWLLFLR--RDGTVRAAQKLSETTGGAVGPFQNGDEWNPTACLGNLDGDGFSDLVFGSRLSDAGGPTRGAARVLFTGA 418          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: WP_069124909.1 (hypothetical protein [Candidatus Thiodiazotropha endolucinida] >ODJ87342.1 FG-GAP repeat protein [Candidatus Thiodiazotropha endolucinida])

HSP 1 Score: 145.6 bits (366), Expect = 6.100e-31
Identity = 128/391 (32.74%), Postives = 189/391 (48.34%), Query Frame = 0
Query:  358 NFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQ----EETGVVYILFLAFGGSVAKYIKIG-GSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVGHRN--GCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAM-DVDRDGGWDLLVGSRGLNQRTQDEGASFVCYMDGVRGGLTGWEQVASQSGVLVPVQ--PGEQFGAAISVLDDPSRNPSSLIFVGA----PGGCMDAVGGAVYVLRIQ 735
            ++ T + +  KI   +G   G       FG A+A +GDL+ DG +DIAVGAPF     E  G V+ILF+   G V  + KI  GS  F G                L  GD+FG +IA + DLNGDG  D+ VGA  D D             A    GA++ILF+N DGTV   +KIS   G+        DRF  ++A +G  N  G T +AVG P+ D  G + GAV++L +   G V+     SS  + +  G+       +   L   D+FG+AV  + D++ DG  DL VG  G +    + GA ++ +++    G    ++  SQ+      Q    ++FG A++ L D + + +  + VGA     GG   A  G V+VL ++
Sbjct:   31 SYSTDVDSEQKISDEKGNFNGDLDVEDQFGLALANIGDLEVDGVTDIAVGAPFDDDEGENRGAVWILFMDSDGKVDTHQKISDGSGDFTG---------------DLDDGDQFGRAIAPLGDLNGDGFLDIAVGAPLDDD-------------AGTDKGAVWILFLNGDGTVLSEQKISQDEGDFEGDLDENDRFAHALASIGDLNNDGVTDLAVGVPYDDDGGTDRGAVWILFMNSDGTVQ-----SSQKISSDEGN-------LDRDLDDEDHFGTAVTEIGDLNGDGVTDLAVGVTGDDDGGPERGAVWILFLNA--DGTVDSKKRISQNRASFDGQLSDNDRFGGALANLGDINSDGTDDLAVGAKQSDDGG---AERGTVWVLFLE 376          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: WP_098061108.1 (T9SS C-terminal target domain-containing protein [Longimonas halophila] >PEN08714.1 hypothetical protein CRI93_02850 [Longimonas halophila])

HSP 1 Score: 144.1 bits (362), Expect = 1.800e-30
Identity = 133/402 (33.08%), Postives = 184/402 (45.77%), Query Frame = 0
Query:  323 GDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVL-AGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQEE----TGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVG-PQPGDRFGASVAFVGHRNGCTV--IAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAM-DVDRDGGWDLLVGSRGLNQRTQDEGASFVCYMDGVRGGLTGWEQVA-SQSGVLVPVQPGEQFGAA---ISVLDDPSRNPSSL 712
            GD+D +     V VGAPGD       GA ++L L N   T+    KI  G G L +G   +   FG     LGD+D DG  D+ VGA   ++     G  Y+LFL   G+V    KI  S++ GG                LA GD FG   A + D++GDGV D++VGA GD D                 SGA Y+LF+N DGTV   +KIS  +G L  G  +  D FG     +G  +G  V  + VGA   D  G  VGA Y+L L   G V   + +S+       G+         + +A  D FG   A + DVD DG  D+LVG+R  +    + G ++V  +DG    ++G   ++   +GV +   PG     A   +S  DDP  +   L
Sbjct:  161 GDVDGD-GVPDVLVGAPGDDDGASNAGAAYVLFL-NADGTVDAQQKISNGTGGLPSGLLEENDFFGIGSTKLGDIDGDGVPDVLVGAVEDDDGASNAGAAYVLFLNADGTVDTQQKI--SNEAGGLA-----------PGTLADGDFFGNGAAGLGDIDGDGVPDVLVGAYGDEDGASN-------------SGAAYVLFLNADGTVDAQQKISNEAGGLPSGLLEENDAFGIDATGLGDIDGDGVPDVLVGATQDDDGGINVGAAYVLFLNADGTVNTQQKISN-------GNGG----LSGSTIADGDEFGRGAAGLGDVDGDGVPDVLVGARRDDDGLLNSGTAYVLSLDGSPTCVSGPGLLSYGATGVTIDFAPGTTGPGACLVVSPFDDPPTDTDGL 523          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: WP_108293106.1 (hypothetical protein [gamma proteobacterium symbiont of Ctena orbiculata] >PUB82766.1 hypothetical protein DBP02_13975 [gamma proteobacterium symbiont of Ctena orbiculata] >PUB88469.1 hypothetical protein DBP01_11905 [gamma proteobacterium symbiont of Ctena orbiculata])

HSP 1 Score: 142.5 bits (358), Expect = 5.200e-30
Identity = 126/393 (32.06%), Postives = 188/393 (47.84%), Query Frame = 0
Query:  358 NFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQ----EETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVGHRN--GCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPYIYMSAPLASHDYFGSAVAAM-DVDRDGGWDLLVGSRGLNQRTQDEGASFVCYMDGVRGGLTGWEQVASQSGVLVPVQ--PGEQFGAAISVLDDPSRNPSSLIFVGA----PGGCMDAVGGAVYVLRIQPIG 738
            ++ T + +  KI   +G   G       FG A+A +GDL+ DG  D+AVGAPF     E  G V+ILF+   G V  + KI  SD  G                 L  GD+FG +IA ++DLNGDG  D+ VGA  D D             A    GA++ILF+N DGTV   +KIS   G         D+F  ++A +G  N  G T +AVG P+ D  G + GAV++L +   G V     LSS  + +  G+       +   L   D+FG+AV  + D++ DG  DL VG  G +    + GA ++ +++    G    ++  SQ+      Q    ++FG A++   D + + +  + VGA     GG   A  GAV++L ++  G
Sbjct:   31 SYSTDVDSEQKISEEKGNFNGDLDVQDQFGLALANIGDLEVDGVIDLAVGAPFDDDDGENRGAVWILFMDSDGKVDTHQKI--SDDSG------------DFTGDLDDGDQFGRAIAPLDDLNGDGFLDIAVGAPLDDD-------------AGTDKGAVWILFLNGDGTVISEQKISQDEGEFEGDLDDNDQFAHALASIGDLNNDGVTDLAVGVPYDDDGGTDRGAVWILFMNSDGTV-----LSSQKISSDEGN-------LDRDLDDEDHFGTAVTEIGDLNGDGVTDLAVGVSGDDDGGPERGAVWILFLNA--DGTVESKKRISQNRASFDGQLSDNDRFGGALANFGDINSDGTDDLVVGAKQSDDGG---AERGAVWILFLEVDG 379          
BLAST of NO13G00460 vs. NCBI_GenBank
Match: WP_062621742.1 (T9SS C-terminal target domain-containing protein [Vitellibacter aquimaris] >KXN98996.1 hypothetical protein LS48_07915 [Vitellibacter aquimaris])

HSP 1 Score: 140.6 bits (353), Expect = 2.000e-29
Identity = 120/311 (38.59%), Postives = 151/311 (48.55%), Query Frame = 0
Query:  291 AFKRIGAMNVDFNLPISPGDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQ----EETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVXXXXXXXXXXXXXXLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPGGKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVGHRNGCTV--IAVGA-PFADGAGHEVGAVYLLELLQTGDVKRF 595
            ++++I     +F+  +   D FG+S+S L   GDL+ N   +++ VGA  D       GA +ILSL N    + +Y KI   EG           FGT + ++GDLD DG  DIAV A        + G VYILFL    SV  Y KI  SD  GG                L  GD FG S+ANI DLNGDG+ DL VGA  D D       GG  R      GA+YILFMNIDGTV   +KIS  SGN          FG S+  +G  NG  +  IAVGA  + +      GA Y+L L   G V  +
Sbjct:   94 SYQKISDTEGNFDGQLDEWDIFGTSISYL---GDLN-NDGLIEIGVGAEYDGDGGYWHGAAWILSL-NVDGAVHSYTKISDTEGNFNAPLDDEDVFGTDIESIGDLDGDGLKDIAVSARRDPDGGSDRGAVYILFLNSDLSVKNYQKI--SDTQGG------------LNDVLEAGDYFGGSVANIGDLNGDGIIDLAVGAYRDDD-------GGANR------GAVYILFMNIDGTVGSLQKISDISGNFDTEFNDEMFFGKSIDLMGDLNGDELIEIAVGARGYQNDGAFNFGAFYILNLNVDGTVNSY 372          
The following BLAST results are available for this feature:
BLAST of NO13G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PCH69432.14.100e-3533.04hypothetical protein COC01_01400 [Bacteroidetes ba... [more]
OYT11160.15.400e-3531.65hypothetical protein B6I18_05305 [Bacteroidetes ba... [more]
PHS68081.11.100e-3233.33hypothetical protein COB12_02365 [Flavobacterium s... [more]
WP_040251807.11.900e-3235.45T9SS C-terminal target domain-containing protein [... [more]
PCK00187.12.500e-3234.70hypothetical protein COA31_25430 [Flavobacteriales... [more]
WP_095514913.13.600e-3132.83hypothetical protein [Rubrivirga sp. SAORIC476] >P... [more]
WP_069124909.16.100e-3132.74hypothetical protein [Candidatus Thiodiazotropha e... [more]
WP_098061108.11.800e-3033.08T9SS C-terminal target domain-containing protein [... [more]
WP_108293106.15.200e-3032.06hypothetical protein [gamma proteobacterium symbio... [more]
WP_062621742.12.000e-2938.59T9SS C-terminal target domain-containing protein [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001864NSK001864Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00460.1NO13G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557964gene_6971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00460.1NO13G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00460 ID=NO13G00460|Name=NO13G00460|organism=Nannochloropsis oceanica|type=gene|length=3260bp
CTTTCAGCATCAGGCCGCCAACGGCTAAACAAAATCAAAGGAGTAGATAG
GTGTATTCTACTCTTCTCCCTCTCTCCAGCAAGAAATATGTTTGCTTGTC
TCTGGCTGGCTTGCTTCTTTCTCTTATCCTGGATCAAAGTGGACATAAAT
GAATATGTTTGTGCGATGGGTGTTTTCATATTCAAATAATAAAGACATTT
ACAAGTTTTTTTTTCCAACTTGCTCGGTCTCGGGGGGAGGAAGAACCGCA
AGTAACGGTGGCTGAGCCGTTAACCTCCTCCTTGTGTGCGTGTTGGTCGA
CTTTCGAGCCACACACGCTCCAATTTCAAACAACACATCTTGCACTGGAA
TCGCTTCTCTTTGAAACATGACACGAATCTCAATTACTTAAACTAACCCG
ATCTTATCCACACACAGTAACTCAAGCCTCCGGGTCAATGCTGAGCCTCT
CTCCTCCAACACGTCGGGGCTGGTGTGCTGCCGCTCCACCGCCTTTCCAC
CGCTTCCTCGCAATCGTTCTCCTGTGCTTCTCATATCAAACCTTGGCTAT
AGATCTTTATCTTGATGGCAGGGGCAATATGCGTAGGTCTGTCCATCCAA
CCTCGCTGCAACCAATACCCGAGGAAAACAACAAGGCTGGGAACCCCGTG
CCAGCTGACCTTATGCCCTTCGGCTCCTCCATCAACGACGAGGAGTTGGG
CGCTCTAATCCATGTGAATCAACCTGTTGATGGGAAAGATACTGCTATGC
CACCGCCTCCTATTGCGTCGCAGCCTCATCCTACCGAGCTTTCTGAGACC
GAGGCCTTGAAGCTGAAGCAGGAACTTTACGCCAAGGACATGCAACGCGG
GACTATCTTCGACATGGAGGACGCACCGGACGATATTTTGGAAGAGGCAC
CGAAAAGCGTGAAATCAATGGCAGCCATTGAAAAGCCCCTGTATACGACG
CATTCGAAAAGTGAAACAATGACGGACGCTGAAGCAAAGACGTCAGCCTC
TTCCACGGAATCCTCCCCAAGTACTGGTGCGAGTGATATAGAACTATCAG
TAGAATTGGCGGCGGCAGAGATATATGGAGATGATCTTATTATAACTGCA
ATGCGTTCGGGTGCAGGCGTTGCCGGTGGTCGGCCTGGCGGCAATGTCCA
GGCCATTCGGAGTGCCGCGTTAGCAGCGACGGCCCTGGCTCGTCAAGGTG
TCGCGGCAGCGCAACGGAAAGCGGGTGTGGGTGCCGGTGCCATTGCATCA
CCCGCTGTTCTTAGCATGCCACGCGCTGGTCTGGCCATTATGCGTGTTGT
GTTTGTGGCCTTCAAGCGCATTGGGGCCATGAATGTGGATTTTAATTTGC
CCATCTCTCCCGGGGATCGCTTTGGGTCTTCCGTGTCGGTGCTGTTGCCG
GCCGGGGATTTGGACCGCAACTGGAACACACTGAAGGTAGCGGTGGGTGC
CCCAGGTGATCACACGTACATGAAGCGACAGGGAGCGGTATTTATCCTGT
CGCTCGCCAATTTTGGAACTACGCTGATCAACTATCATAAGATTATTCCC
GGGGAAGGCGTCCTGGCGGGACAGGCTTGCAAGTACTCGAGCTTTGGCAC
GGCAGTGGCAACCCTAGGCGACTTGGACACTGATGGATTTTCGGACATTG
CTGTGGGCGCCCCGTTTCAGGAAGAGACGGGAGTGGTCTATATTTTGTTC
TTGGCCTTTGGGGGCTCGGTCGCAAAGTACATAAAGATCGGTGGTAGTGA
CAAATTCGGGGGAGCTGTGTGGGGAAATCCGCATTTTGGAAATCCGCATT
ATCCGTCGCCCTTGGCCATTGGGGATGAATTTGGCTGCTCTATCGCCAAC
ATTGAGGATCTGAACGGGGATGGCGTGGCAGACTTGGTCGTGGGTGCCTG
TGGAGACACGGACTCGAGAAAAGGGTTTGCCCCCGGCGGCAAGGGACGCG
AGGCCTGCATAGCCTCAGGTGCCATTTACATTCTATTTATGAATATCGAT
GGTACGGTCAAATACCACCGCAAGATCAGCGCGCGTAGCGGGAATCTGCT
GGTAGGGCCGCAGCCAGGGGATCGTTTTGGGGCATCAGTGGCGTTCGTCG
GGCACCGCAATGGATGCACCGTGATCGCGGTGGGCGCACCCTTCGCGGAC
GGTGCAGGTCACGAGGTTGGGGCCGTGTATCTTTTGGAGCTACTGCAAAC
GGGTGACGTGAAACGATTCGAGATTCTGAGTTCTGCCTATGTACCTGCCC
CCCCAGGTTCGGCCCGGTCGCCGTACATATATATGAGTGCGCCTTTGGCC
TCACACGACTACTTCGGTAGCGCTGTGGCAGCCATGGACGTGGACAGAGA
CGGAGGCTGGGACTTGTTGGTCGGATCGCGGGGCCTGAATCAGCGTACGC
AGGATGAAGGGGCCTCATTTGTGTGCTATATGGATGGGGTTCGAGGGGGG
TTGACGGGGTGGGAGCAGGTAGCGAGCCAGAGTGGCGTTTTGGTACCCGT
GCAACCAGGGGAGCAGTTTGGAGCCGCAATTTCCGTTTTAGATGATCCCA
GCCGCAACCCTTCTAGCTTAATCTTTGTAGGTGCGCCCGGTGGGTGTATG
GATGCAGTGGGTGGGGCGGTGTACGTGCTACGGATCCAGCCCATTGGAGG
GTAGATTTGTAGGGGACGGTGGGAGTATAGGGCGTATGAGCTGGAAAAAT
ATGGGCTGGGAGGTAAGAAGGATAAGACAAATGAGAGGAGGGAAAATAGA
AAAGAATAAAGAATGAATTCTACTGCGTGCACGGGATTAAACTTTTCCTT
ATAAATGCCTACTTTTTCAAAATCTCAATGCTGAGAGCGAAGCGAAGGGA
GTGACGAATCATTTGTTACGCGAATTACATTTGTCAATATTATGACCATT
TTTGCTACAGGAGAGTATTATTGGGTAAAGATATATGGAAGGAAAATGAT
TTCGTGTGTATGTCATTCTTGTGAGAATTTTTCGTTTTACTGTGTTGTCC
TCCCCGCTCTTCCTTCGCGCAGTCGTGCGCGATGATGATGAATTGAAATA
CCTTCAGGCCTCACTGTCCCCTCTCCCACCCAGTTGCAACAGCAATCTGT
CTATAGACAGAACAAAAAAGCCATCACTATATAGCGAACCAACGCCGAGT
TTCAACACTCCCCACCTCTATTATCGCGGAAACGGACTGCGCCAAAAGTG
GGCGAGAGACGACGAGCGCCATCATGGTCTCCTCTTCTCACTCTACAACC
CCATGCACAT
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protein sequence of NO13G00460.1

>NO13G00460.1-protein ID=NO13G00460.1-protein|Name=NO13G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=739bp
MLSLSPPTRRGWCAAAPPPFHRFLAIVLLCFSYQTLAIDLYLDGRGNMRR
SVHPTSLQPIPEENNKAGNPVPADLMPFGSSINDEELGALIHVNQPVDGK
DTAMPPPPIASQPHPTELSETEALKLKQELYAKDMQRGTIFDMEDAPDDI
LEEAPKSVKSMAAIEKPLYTTHSKSETMTDAEAKTSASSTESSPSTGASD
IELSVELAAAEIYGDDLIITAMRSGAGVAGGRPGGNVQAIRSAALAATAL
ARQGVAAAQRKAGVGAGAIASPAVLSMPRAGLAIMRVVFVAFKRIGAMNV
DFNLPISPGDRFGSSVSVLLPAGDLDRNWNTLKVAVGAPGDHTYMKRQGA
VFILSLANFGTTLINYHKIIPGEGVLAGQACKYSSFGTAVATLGDLDTDG
FSDIAVGAPFQEETGVVYILFLAFGGSVAKYIKIGGSDKFGGAVWGNPHF
GNPHYPSPLAIGDEFGCSIANIEDLNGDGVADLVVGACGDTDSRKGFAPG
GKGREACIASGAIYILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGAS
VAFVGHRNGCTVIAVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSA
YVPAPPGSARSPYIYMSAPLASHDYFGSAVAAMDVDRDGGWDLLVGSRGL
NQRTQDEGASFVCYMDGVRGGLTGWEQVASQSGVLVPVQPGEQFGAAISV
LDDPSRNPSSLIFVGAPGGCMDAVGGAVYVLRIQPIGG*
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Synonyms
Publications