NO12G03910, NO12G03910 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03910 vs. NCBI_GenBank
Match: EWM25642.1 (transcription antitermination protein [Nannochloropsis gaditana]) HSP 1 Score: 453.0 bits (1164), Expect = 3.100e-123 Identity = 268/397 (67.51%), Postives = 298/397 (75.06%), Query Frame = 0
Query: 20 RRRGGSCSGCGLRNSMKTRWL-VGMLVACTASCG-ATVAAFHMP----PKQPQHSSSSFFPPRRSPVRPLLASPSTTTSTPNSADIFDQDGSLPSLAPTFPRSR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARKWEKRKAARRERITKQKGAREAMLDEAEDVIPDREVPLWYALKVKNGMELYLRDTLAQLATLPEYRGQILETLVPMAKSVKSLGKQLRLVEQPLHRGYVFIHMAMNRELHDAVLSPNGVGCFIGRRVYGKGIIPNPLRAKEADRLKERAMYEAGRTIDLDAIPFRPQDRVDVLVGEFAYSRGRVTSVKETEVNVAVKRNKVEVRVTLPQSGVRKLTQEELDQEAREAGEEGRRAFDRARGTD-TGGVDGWGAIA 409
R R S + G R++ WL +G++VA C A AF +P P++ + S PR + L ASP T+TS +DIF+QDGS+PS FP SR VARKWE+RK +RRERITK+KGAREAMLDEAEDVIPDREVPLWYALKVK GME+ +RDTL +LATLP+YRGQILETLVPMAKSVKSLGK LRLVEQPLHRGYVFIHMAM+R+LHDAVL+PNGVGCFIGRRV GKGIIPNPLRAKEADRLKERA+YEAGRTIDL+AIPFRP+DRVD+LVGEFAY+RGRVTSVKETEVNVAVKRNKVEVRVTLPQSGVRKLTQEELDQEAREAGEEGRRAFDRARG TGG GAIA
Sbjct: 8 RPRVSSGTLTGNRHTGGVMWLIIGLVVAGKVCCSTAFSTAFQLPGASDPRKRVLPAGS--SPRLFSLPSLHASPLTSTS---GSDIFEQDGSIPS----FPPSRAATSAVDRYSVGPVDPGDDRETRPHADSISEAEIEEVARKWERRKQSRRERITKKKGAREAMLDEAEDVIPDREVPLWYALKVKTGMEIQIRDTLGELATLPQYRGQILETLVPMAKSVKSLGKSLRLVEQPLHRGYVFIHMAMSRDLHDAVLAPNGVGCFIGRRVAGKGIIPNPLRAKEADRLKERALYEAGRTIDLEAIPFRPKDRVDILVGEFAYARGRVTSVKETEVNVAVKRNKVEVRVTLPQSGVRKLTQEELDQEAREAGEEGRRAFDRARGGGWTGGRRSHGAIA 395
BLAST of NO12G03910 vs. NCBI_GenBank
Match: EWM25649.1 (DNA-binding SAP [Nannochloropsis gaditana]) HSP 1 Score: 397.1 bits (1019), Expect = 2.000e-106 Identity = 404/838 (48.21%), Postives = 458/838 (54.65%), Query Frame = 0
Query: 458 MVGGMLELTGQKEDVGGYYKEKFENAKKAWECWKNYLEEKEDRRKAGRERALRRKAMGYDEHNDNWKGPSWQEGGXXXXXXXXXXXXXXXGVGLEEKWVPRGARRGQDXXXXXXXXXXXXXXXXXXXXXFDLDGTPGSRGAKRVGAEGGXXXXXXXRGRGESTLGDDELEALIHSSPVSAPPVVTNRRGG-EGSGEVGRSGEAGAKQGAGEGMGTLSEAEQKELDVWLGMISSGKA-------ATXXXXXXXXXXXXXXXXXXXGMGGQARAKPPSGARGKEFTLDPEEEKELNEWLSRFDADYKEGADGLKVEKKKGWNEGEETLEGVLGLGEGGGSNTQEGGKRGREAVKGDDAVDRELAELLAKLEAAESRATAGTGAGDPREGGREGRRVGASFPTPTTVKSLPKGGAEAALEIDDFLSELNIPTPASHKLTTTAVAGGLGAGQAGGGREGGKGRDFGGTLPSFDSATLLKSALEDVGSRGAGAKILPISSR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGAYGEDPEDSPGQFLEEGLEEAVHLGRPR-GGLGGMKQGFMFDDPLGGNAEPMQMR---GGRXXXXXXXXXXXXXXXXXXXXXXXXXXXWQEGEEDLFGGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-WGALLNDLDLGGLGDLEGLEELVGAGKKGEKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAGMKVADLKVELKAMGLAVSGTKGELQARLREATE 1281
MV GMLELTGQKEDV GYY+EKFENAKKAWE WKNYLEEK+ RRKAGRERA+RRKAMGYDEHNDNWKGPSW E G XXXXX G G+E+KWVPR R G+ XXXXXX FDLD TPG+ XXXXXXX ESTLGDDEL+ALI SSPVS PP V RRGG E G VG DVWLGMISSG+ GMGGQ PSGA+GK+F+LDPEEEKELNEWL+RFDADYKEGADGL+VEK K G +G+DAVDRELA+LL KLEAAE A+AG GG G ++ T + SL G EAA+ +D FLSEL P+ GG+ G KG + DSA+LL+ ALEDVG RG A+I PISSR XXXXXXXXXXXX XXXXXXXXXXXXXXXXX LGAY EDPE++PGQFLEEGLEE+VHLGRPR GG+GGM+QG+M+DDPLGG E M + GG+XXXXXXXXXXXXXX EE++ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D WG+LL+++DLG +E+LV G+K ++ I GMKV DL+ EL+AMGL VSG+K +LQARL AT+
Sbjct: 1 MVNGMLELTGQKEDVDGYYREKFENAKKAWEAWKNYLEEKDARRKAGRERAMRRKAMGYDEHNDNWKGPSWVE-GREGGXXXXXRGWDRQGTGVEDKWVPRAERGGRGDEXXXXXXDKELENHFLDRLMFDLDKTPGAGRRXXXXXXXXXXXXXXXXXXXESTLGDDELDALIQSSPVSTPPEVAQRRGGVEQEGRVG-XXXXXXXXXXXXXXXXXXXXXXXXXDVWLGMISSGRGXXXXXXXXALSLFKGPASLPSSSFTPSPGMGGQPXXXXPSGAKGKDFSLDPEEEKELNEWLNRFDADYKEGADGLRVEKTK----------------SGXXXXXXXXXXXXXXXXEGEDAVDRELADLLTKLEAAEISASAG--------GGERGVKIKGGGGTAPRIPSLGVEGVEAAVGVDSFLSELYRPSK--------------------GGKRGKKGAQIEAS-SGLDSASLLRMALEDVGGRGGEAEIPPISSRSQDARMNTGHRGXXXXXXXXXXXXETLPASVKRRLFVSRTVEGEDXXXXXXXXXXXXXXXXXGGGRRSSDRGQTRENDLLLGAYSEDPEEAPGQFLEEGLEESVHLGRPRGGGMGGMRQGYMYDDPLGGGRELMSLNARPGGKXXXXXXXXXXXXXXMRAL------------AEENVNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKIRKNRVKRNEDEWGSLLDEVDLGXXXXXXXIEKLVNTGRKRQE-----------DIYAEGKSEKRNSKVLAPTVGGRGRESTRLSPSMIEGMKVVDLRAELRAMGLTVSGSKADLQARLVRATQ 768
BLAST of NO12G03910 vs. NCBI_GenBank
Match: AMV34208.1 (hypothetical protein VN12_18910 [Pirellula sp. SH-Sr6A]) HSP 1 Score: 66.2 bits (160), Expect = 8.200e-7 Identity = 54/161 (33.54%), Postives = 75/161 (46.58%), Query Frame = 0
Query: 194 WYALKVKNGMELYLRDTLAQLATLPEYRGQILETLVPMAKSVK--SLGKQLRLVEQPLHRGYVFIHMAMNRELHDAVLSPNGVGCFIGRRVYGKGIIPNPLRAKEADRLKERAMYEAG-RTIDLDAIPFRPQDRVDVLVGEFAYSRGRVTSVKETEVNVAV 352
WY LKV+ E +R+ L + L + E LVP V+ GK+ R+V++ L+ GY+ I M +N + V GVG F G GK P P+ + DR+ + A +A AIPF+P DRV V G F G V + E V V
Sbjct: 3 WYILKVQFNREDTIREALEKRIRLSNMQTSFGEILVPTEDVVEFTRAGKR-RVVKRKLYPGYLVIRMIINDDTWFLVRETTGVGDFTGSA--GK---PTPMSDADVDRILKLAYPDADEEQAPKTAIPFKPGDRVRVKEGNFQSLEGDVDRIDEANGRVTV 157
BLAST of NO12G03910 vs. NCBI_GenBank
Match: WP_071671087.1 (transcription termination/antitermination factor NusG [Flavobacteriaceae bacterium UJ101] >APD07210.1 transcription termination/antitermination protein NusG [Flavobacteriaceae bacterium UJ101]) HSP 1 Score: 66.2 bits (160), Expect = 8.200e-7 Identity = 50/162 (30.86%), Postives = 79/162 (48.77%), Query Frame = 0
Query: 194 WYALKVKNGME----LYLRDTLAQLATLPEYRGQILETLVPMAKSVKSLGKQLRLVEQPLHRGYVFIHMAMNRELHDAVLSPNGVGCFIGRRVYGKGIIPNPLRAKEADRLKERAMYEAGRTIDLDAIPFRPQDRVDVLVGEFAYSRGRVTSVKETEVNVAV 352
WY LK +G E LY+ + + +L L +Y GQI L+P K V+ + E+ GYV++ +A+ E+H ++S + V F+ KG P P+R E +RL R M E +D AIP+ + + V+ G F G V + E + + V
Sbjct: 8 WYVLKTISGQENKVKLYIENEVQRLG-LSDYLGQI---LIPTEKVVQIRNGKKITKEKVYFPGYVYLEVALEGEMHHTIISLSNVIGFLSET---KGGDPLPMRKSEVNRLLGR-MDELAENVDQIAIPYIVGETIKVIGGPFNGFNGSVEEINEDKRKLKV 161 The following BLAST results are available for this feature:
BLAST of NO12G03910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03910 ID=NO12G03910|Name=NO12G03910|organism=Nannochloropsis oceanica|type=gene|length=5544bpback to top protein sequence of NO12G03910.1 >NO12G03910.1-protein ID=NO12G03910.1-protein|Name=NO12G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1281bpback to top Synonyms
Publications
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