NO12G03480, NO12G03480 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03480 vs. NCBI_GenBank
Match: KOO28304.1 (cyclin domain-containing protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 123.2 bits (308), Expect = 2.900e-24 Identity = 82/270 (30.37%), Postives = 132/270 (48.89%), Query Frame = 0 Query: 239 NSTSSIFCRNTACNPDADQIILCMSSVLQVQMLHDKQAGGNEALRERFRVFEA---PVTARTGALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLELCSDSFGLRARGASSNSNIS 506 NSTSSIF +T PD ++++ C++ V+ + + +A +E +R RF F P+ A L I H I +F+ ++ EC I++LVY+ R+I+TTS P+ +W+ ++L +L+LAQKVWDDR + S FS P F L+ + +E+KFLE++ Y ++S +LY YYF+LR L ++ + REF LKP+ + A KLE + + + + N S Sbjct: 106 NSTSSIFISSTLTKPDTEELVFCIAVVIH-ERIQQGEAQSHE-VRHRFPFFSEDNNPLYAVPSEL------------------DGRGSDSSDGGSDSEKKRTRREVPTEDTIFHTIRSVFECAQIPAECLIVSLVYMERLIATTSCPVLVTSWRPILLASLILAQKVWDDRSLHNSDFSVFCPMFTLKEINFLEKKFLEMVDYDVSISASLYASYYFQLRTLCQR------VDREFTLKPIDVETAAKLEARGSAHTAKLKQTAPRKNQS 349
BLAST of NO12G03480 vs. NCBI_GenBank
Match: CEM07028.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 119.0 bits (297), Expect = 5.400e-23 Identity = 59/149 (39.60%), Postives = 95/149 (63.76%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLELCSDSFGLRA 496 I FI +++ + +SPECN+++L+YINR+I+ + LPLH NW+ +V ++L++AQKVWDD+ + S F+ P F L+ + +E KF++LLQY+ V + Y +YYFELR+ F +S + P+ P+ A KLE S + +A Sbjct: 101 IEKFITALYECAEYSPECNVLSLLYINRLIAFSGLPLHFGNWRPLVFISLIVAQKVWDDKYLGNSDFAYIYPFFTLDEINNMEIKFVKLLQYQVIVKPSTYAKYYFELRSFF------QSNPEDLPIAPLNNITAEKLEKKSTDYSEKA 243
BLAST of NO12G03480 vs. NCBI_GenBank
Match: XP_012678515.1 (PREDICTED: cyclin-Y isoform X1 [Clupea harengus]) HSP 1 Score: 116.7 bits (291), Expect = 2.700e-22 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSFGLRARGASSNS 503 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ + FPL+P++ +A+KLE LC D + +GA S Sbjct: 179 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDIGPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------SEANNLSFPLEPLSRDKAQKLEAIARLCDDKYKDLRKGAKKRS 332
BLAST of NO12G03480 vs. NCBI_GenBank
Match: XP_012678516.1 (PREDICTED: cyclin-Y isoform X2 [Clupea harengus]) HSP 1 Score: 116.7 bits (291), Expect = 2.700e-22 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSFGLRARGASSNS 503 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ + FPL+P++ +A+KLE LC D + +GA S Sbjct: 171 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDIGPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------SEANNLSFPLEPLSRDKAQKLEAIARLCDDKYKDLRKGAKKRS 324
BLAST of NO12G03480 vs. NCBI_GenBank
Match: XP_012678517.1 (PREDICTED: cyclin-Y isoform X3 [Clupea harengus]) HSP 1 Score: 116.7 bits (291), Expect = 2.700e-22 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSFGLRARGASSNS 503 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ + FPL+P++ +A+KLE LC D + +GA S Sbjct: 132 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDIGPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------SEANNLSFPLEPLSRDKAQKLEAIARLCDDKYKDLRKGAKKRS 285
BLAST of NO12G03480 vs. NCBI_GenBank
Match: XP_012678518.1 (PREDICTED: cyclin-Y isoform X4 [Clupea harengus]) HSP 1 Score: 116.7 bits (291), Expect = 2.700e-22 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSFGLRARGASSNS 503 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ + FPL+P++ +A+KLE LC D + +GA S Sbjct: 125 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDIGPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------SEANNLSFPLEPLSRDKAQKLEAIARLCDDKYKDLRKGAKKRS 278
BLAST of NO12G03480 vs. NCBI_GenBank
Match: XP_012678519.1 (PREDICTED: cyclin-Y isoform X5 [Clupea harengus]) HSP 1 Score: 116.7 bits (291), Expect = 2.700e-22 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSFGLRARGASSNS 503 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ + FPL+P++ +A+KLE LC D + +GA S Sbjct: 124 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDIGPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------SEANNLSFPLEPLSRDKAQKLEAIARLCDDKYKDLRKGAKKRS 277
BLAST of NO12G03480 vs. NCBI_GenBank
Match: XP_012678520.1 (PREDICTED: cyclin-Y isoform X6 [Clupea harengus]) HSP 1 Score: 116.7 bits (291), Expect = 2.700e-22 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSFGLRARGASSNS 503 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ + FPL+P++ +A+KLE LC D + +GA S Sbjct: 117 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDIGPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------SEANNLSFPLEPLSRDKAQKLEAIARLCDDKYKDLRKGAKKRS 270
BLAST of NO12G03480 vs. NCBI_GenBank
Match: XP_012678521.1 (PREDICTED: cyclin-Y isoform X7 [Clupea harengus]) HSP 1 Score: 116.7 bits (291), Expect = 2.700e-22 Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSFGLRARGASSNS 503 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ + FPL+P++ +A+KLE LC D + +GA S Sbjct: 32 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDIGPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------SEANNLSFPLEPLSRDKAQKLEAIARLCDDKYKDLRKGAKKRS 185
BLAST of NO12G03480 vs. NCBI_GenBank
Match: EDL83779.1 (similar to 5730405I09Rik protein (predicted), isoform CRA_b [Rattus norvegicus]) HSP 1 Score: 116.3 bits (290), Expect = 3.500e-22 Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 0 Query: 347 IHHFIEGIFKRSRFSPECNIIALVYINRVISTTSLPLHPRNWKSVVLVALLLAQKVWDDRCVALSSFSQHLPDFPLERMRLVERKFLELLQYRATVSQALYTRYYFELRALFEKLLEQESISREFPLKPMAMWQARKLE----LCSDSF-----GLRARGASSNSNI 505 I+ F+ +F ++ + EC I+ LVY+ R+++ + + P NWK +VL A+LLA KVWDD+ V + Q L D +E M +ER+FLELLQ+ V ++Y +YYF+LR+L E+ S FPL+P++ +A KLE LC D + +R R AS+++ I Sbjct: 117 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSL------AEANSLSFPLEPLSRERAHKLEAISRLCEDKYKDLRKPMRKRSASADNLI 277 The following BLAST results are available for this feature:
BLAST of NO12G03480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03480 ID=NO12G03480|Name=NO12G03480|organism=Nannochloropsis oceanica|type=gene|length=3618bpback to top protein sequence of NO12G03480.1 >NO12G03480.1-protein ID=NO12G03480.1-protein|Name=NO12G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bpback to top Synonyms
Publications
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