NO10G03890, NO10G03890 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03890
Unique Name	NO10G03890
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4696
Alignment location	chr10:1134313..1139008 -

Link to JBrowse

Properties


Property Name	Value
Description	DNA polymerase epsilon subunit

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:1134313..1139008 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication
GO:0071897	DNA biosynthetic process
GO:0006261	DNA-dependent DNA replication
GO:0006260	DNA replication

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003887	DNA-directed DNA polymerase activity
GO:0016779	nucleotidyltransferase activity
GO:0016740	transferase activity
GO:0003887	DNA-directed DNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024639	DNA_pol_e_bsu_N
IPR007185	DNA_pol_alpha/epsilon_bsu

Vocabulary: **Cellular Component**
Term	Definition
GO:0008622	epsilon DNA polymerase complex
GO:0005634	nucleus

Homology

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BLAST of NO10G03890 vs. NCBI_GenBank
Match: XP_009844787.1 (hypothetical protein H257_17620 [Aphanomyces astaci] >ETV65735.1 hypothetical protein H257_17620 [Aphanomyces astaci])

HSP 1 Score: 334.3 bits (856), Expect = 7.200e-88
Identity = 192/531 (36.16%), Postives = 290/531 (54.61%), Query Frame = 0

Query:   38 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDLNQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKPIMGHDRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDDVFRVWNMGFPFPEARQDTLKHMRSLEIFGPGFTPQQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQ----LLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEAS 565
            R +FR  KL GL++ +DA+  L+S LT++  +   LD ++ AIK  I+R +LKSS+V +  +E+ +  L    +D + + + +++AF  PK+ + P TK++  + D  RK++  +  R  +FRER+    +RV+R++ F KP+                                                       S   +A   NG+FT   +VLV G+VLDDVF V  +G P PE R+ +++ +  ++  G   + QQ   +  LE+       V L+D+HLD P  + +L  LF GYE       FT  +F+LMG+FTS PV +G    S+    L  +FD L++LL    P L  ++ F+FVPGP DPGA  VLPR PLP   T      +  A   SNPCR+R +T+++++ R+D+  KM +HS+ +    HDG +++ + R LV++L+DQGHLCPLP+ ARPI W YD+AL+++PLPD+LIL D      + YAG  V  PG F VD SF  Y PA+ T E S
Sbjct:    5 RQVFRELKLHGLTLHSDALKRLLSELTNQPTLH--LDDVVFAIKNSIDRSKLKSSVVSQDALESALDTLLNVSSDNDYQCIQVFNAFDQPKLIFHPSTKTYEVSADPTRKLHASSAHRLSLFRERFSALERRVLRHKSFSKPVAATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIS---EAKYTNGIFTSTCIVLVEGQVLDDVFHVETIGSPPPELREHSVQILSGVDPLGVEISAQQLTQIQQLERNQELDCFVVLSDVHLDEPAVMARLDALFSGYE------PFTPTLFILMGNFTSSPVGYGYGAESKTIRTLKQHFDDLATLLL-KYPALVEKSQFLFVPGPDDPGAPHVLPRHPLPTMCTDDFVRRIPSAIMTSNPCRIRYYTKDLIVCRDDLQHKMTKHSLFR-LPTHDGPSDD-VSRHLVKTLVDQGHLCPLPIAARPIHWAYDSALQMFPLPDVLILADKCKQFQVNYAGVSVFHPGPFHVDYSFVLYRPASNTAEVS 521

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BLAST of NO10G03890 vs. NCBI_GenBank
Match: XP_020699377.1 (DNA polymerase epsilon subunit B [Dendrobium catenatum])

HSP 1 Score: 332.0 bits (850), Expect = 3.600e-87
Identity = 197/543 (36.28%), Postives = 306/543 (56.35%), Query Frame = 0

Query:   38 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDV-DGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDL--------NQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKPIMGH---DRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDD-VFRVWNMGFPFPEARQDTLKHMRSLEIFGPG-FTPQQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEASML 567
            R + + FKLRG ++K DA+   +S L+H +D  D ALD +LD     I++  LKSS++D   +  VV  L + E  +        ++ A+ + DAF +P+  Y+P  K   + +  +  ++ +A  +A ++++RYQL  QR+ R++ F KP+      D    ++  + SL+G  G + L+G I+Q+EEG FYLED+T  IP+D +        +A + +G F EN++++  GE+L + +F+V   GFP  E R D+L  +  L+ FG G  T ++   ++ +EK+A   + V L+D+ LD   A+EKL  +  GYES          +FVLMG+F S+P        S L   F+ L  ++K   P +  ++ F+F+PGP D G   VLPR  LP  L   L   +  A F SNPCR++ +TQEIV FR+D++ +M R S++    +      +P    LV ++  Q HLCPLPL  +PI W YD++LRLYP P  ++LGD S   + +Y G    +PG F  D +FAAY P T+ VE S L
Sbjct:    8 RRVQKKFKLRGFTLKVDALEEALSFLSHFQDAEDEALDLLLDE----IDKESLKSSILDGEAVRRVVNLLLEAETAVDPTSPAVSSRSALRVVDAFVIPRFCYDP-IKQVFYEYIGKLSIHGEATDKAALYKDRYQLLHQRLTRDKYFSKPVFDAEMVDSESCEITPIQSLIGCIGRRWLMGVISQLEEGHFYLEDLTAAIPIDLT--------NAKITSGFFVENTVIVAEGELLSNGIFKVNTCGFPPLEDRDDSLSLLMGLDFFGGGVVTTEENLRMSAMEKKAENDMFVILSDVWLDNEEAMEKLSVVLDGYESL----EVVPSLFVLMGNFCSRPCNLSFHSFSNLRTQFEKLGEMIKAH-PRINEQSRFLFIPGPDDAGPAKVLPRCALPNYLIEELQKLIPTAIFSSNPCRVKFYTQEIVFFRQDLLYRMRRSSLIPPSSE---ETTDPFEH-LVATITHQSHLCPLPLTVQPIIWSYDHSLRLYPTPHTIVLGDRSEQKAFKYTGITCFNPGSFSSDGTFAAYRPCTQEVELSAL 528

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BLAST of NO10G03890 vs. NCBI_GenBank
Match: ORX56662.1 (DNA polymerase epsilon, subunit B [Piromyces finnis])

HSP 1 Score: 324.7 bits (831), Expect = 5.700e-85
Identity = 191/555 (34.41%), Postives = 312/555 (56.22%), Query Frame = 0

Query:   34 AAANRAIFRAF-KLRGLSVKADAVAALVSVLTHEEDVDGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTK-----------DENDLN----QEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELF---VKPIMGHDRNYLKLVTVDSLLGT-HGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDD-VFRVWNMGFPFPEARQDTLKHMRSLEIFGPGFTPQQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDD-SFAAYYPATRTVEASML 567
            ++ N+ I++ F K  GL++++DA+  +  +   E      +   LD I     + + K+ LV RS +E ++++  +           D   +N    Q+   I DAFS+PK TY  Q+K+F       +K+  +A A+ ++++ERY L +QR++RNE+F    + ++  + N LK+  + SLLG+ H    L G +T++++G+++LED    I L+F + +           GLFTE+  VLV GE  +D VFR+  MG P  E R++TLK  + ++        +    L  LEKE   +  V L+++ +D+P  L KLRTLF+GY       A     F+ +G+F+S P  +  + + +    FD L  LL  + P L     F+F+PGP+DP   A +PR P+P S T  + + + + HF++NPCRL  FTQEIV+FRED++ +M R+ I+      D + E  + + L++++L+Q +LCPLP+  RP+ W Y  AL+LYP+PD+LIL D     S  Y GC+ ++PG F   D  F+ YYP++RT + S +
Sbjct:    2 SSLNQTIYKIFTKTYGLTIQSDAIRYINEIFKKENYDSKNITNALDTIARFYIQNQAKTKLVTRSSLEEIIQKTIEKNIIHETLGKYDNESINFDDIQKYFHIKDAFSLPKFTYNVQSKNFQ-RDTTPKKLFANASAKGKLYQERYNLIKQRILRNEIFNVSTQNLITTESNLLKITPIKSLLGSPHKAYVLFGMLTKMQDGKYHLEDPDATIELEFPEYMLMSI-------GLFTEDCFVLVHGEYTEDLVFRITEMGMPIFEKRENTLKAYKQIDYANEFKITESENVLKKLEKELDDVCFVILSEVFIDKPKVLLKLRTLFEGYSQTVIPYA-----FIFIGNFSSTPYIYNGKDSIKYQESFDNLCDLLL-EFPKLITNTHFVFIPGPNDPWGEAAIPRSPIPNSFTEKIRTKIPNIHFLTNPCRLYFFTQEIVIFREDLVNRMRRNCIV----PPDENTEPDVSKHLIKTILEQSYLCPLPIHMRPVYWAYSYALQLYPVPDILILADKCEPYSHNYNGCRCINPGSFSNSDFIFSVYYPSSRTSQDSKI 538

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BLAST of NO10G03890 vs. NCBI_GenBank
Match: XP_008791857.1 (PREDICTED: DNA polymerase epsilon subunit B [Phoenix dactylifera])

HSP 1 Score: 323.6 bits (828), Expect = 1.300e-84
Identity = 197/547 (36.01%), Postives = 302/547 (55.21%), Query Frame = 0

Query:   34 AAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDV-DGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDL--------NQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKPIMG---HDRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDD-VFRVWNMGFPFPEARQDTLKHMRSLEIFGPG-FTPQQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEASML 567
            A   + + R FKLRG ++K +A+   ++ L+   D  D ALD ++D     I++  LKSS++DR  I  VV  L   +  +        N  A+ + DAF +P+  Y+P  K F +    R  ++ +AG +A ++R+RYQL  QR+ R++ F +P       D    ++  + SL+G  G + ++G I+Q+EEG F+LED+T  +P+D +        +A + +G F EN++++  GE+L + +F+V   GFP  E R+ +L  +  L+ FG G  + ++   L+ LEK+A   + V L+D+ LD    +EKL  +  GY+S          +FVLMG+F S P        S L   F  L  +++   P L   + F+F+PGP D G   VLPR  LP  LT  L   + +A F SNPCR++ +TQEIV FR+D++ +M R S++    +      E     LV ++  Q HLCPLPL  +PI W YD+ LRLYP PDL++LGD S   + +Y G    +PG F  D +FAAY P T+ VE S L
Sbjct:    4 AGTRKKVQRKFKLRGFTLKVEALEEALAFLSRFPDAEDDALDLLIDE----IDKESLKSSILDREAIHRVVSLLLDADAAVDPSSTVASNGAALRVIDAFVVPRFRYDPIKKVF-YEHTGRLPIHGEAGDKAALYRDRYQLLLQRLSRDKYFSRPAFDTEMTDSKSCEITPIQSLIGCSGRRWIVGVISQLEEGHFFLEDLTAAVPIDLA--------NAKITSGFFVENTIIVAEGELLSNGIFQVNTCGFPPLEDREVSLSLLMGLDFFGGGVLSTEETLRLSGLEKKAVNDMFVILSDVWLDNDETVEKLAVVLDGYDSV----EVVPSLFVLMGNFCSHPCNLAFHSFSSLRMQFGKLGEMIE-ARPRLKERSRFLFIPGPDDAGPSKVLPRCSLPKYLTEDLQKHIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSSLIPPSTEETSDPFEH----LVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPDLIVLGDRSEQKAFKYTGITCFNPGSFSNDSTFAAYRPCTKEVELSAL 528

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BLAST of NO10G03890 vs. NCBI_GenBank
Match: GAQ80362.1 (DNA polymerase epsilon subunit B2 [Klebsormidium nitens])

HSP 1 Score: 323.2 bits (827), Expect = 1.700e-84
Identity = 204/541 (37.71%), Postives = 295/541 (54.53%), Query Frame = 0

Query:   35 AANRAIFRAFKLRGLSVKADAVAALVSVLT---HEEDVDGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDLNQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKPIMG----HDRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVL-DDVFRVWNMGFPFPEARQDTLKHMRSLEIFGPGFTP-QQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEASML 567
            AA R + + FK RGL +K DAV A+   +    HEE        IL  I   ++R  L SS++ + +I+ V+  L     D  ++A    +AF MPK  Y+   K+F  +  K   ++ DA ++  ++R+R+ L +QRV+R E F KP +G     D    +L  + SL+G+ G K +LG I+Q+E+GRF+LED T  I LD      SQ    ++  GLFTENS V+V G+VL     +V NMG P  E R+ T +    L+ FG G  P ++Y+ L   E+ A     +  +DLHLD      +L +      +   +  F   +FVL+G+F S+P    N   + +   F  L++ +   A    A   F+FVPGP DPG   V+PR PLP   T  ++S L +A F SNPCR+R +TQEIV+FRED++ KM R  ++      +    +P  + L  ++L Q HLCPLPL+ +PI WEYD+ALRLYPLPD+L+L D +      Y      +PG F  D SF  Y PA R VE + L
Sbjct:    7 AACRRVQKEFKSRGLGLKMDAVKAVADFVVNSMHEE------HEILQEIFAELDRKTLSSSILSKEVIDEVLSTLATG-GDSGEDAFTFVEAFQMPKFDYDQVRKAFHQSTAK-LSIHADAKSKTALYRDRFTLLQQRVLRQEAFTKPALGLKRAEDTQTAELTPLQSLVGSTGTKYVLGFISQLEDGRFFLEDSTTQILLDL-----SQVTKENVTTGLFTENSFVVVEGQVLPTGELQVSNMGCPPVEDRETTYRLTGGLDFFGAGVIPLEKYESLREQEEAATEHSFMFFSDLHLDDDETFRRLESTL----ATCQESNFVPSLFVLIGNFWSRPCNLANHDYAHMRAQFKKLATTIAAFADVRDA-TQFVFVPGPGDPGPANVVPRPPLPKFFTNEISSLLPNAVFASNPCRIRFYTQEIVIFREDLLHKMRRACVV---PPSEKETTDPFQQ-LAVTVLQQSHLCPLPLQVQPIFWEYDHALRLYPLPDVLVLADRAEQKEFVYENVVCFNPGSFANDSSFVIYRPAPREVELNSL 525

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BLAST of NO10G03890 vs. NCBI_GenBank
Match: XP_020587022.1 (DNA polymerase epsilon subunit B [Phalaenopsis equestris] >XP_020587023.1 DNA polymerase epsilon subunit B [Phalaenopsis equestris])

HSP 1 Score: 323.2 bits (827), Expect = 1.700e-84
Identity = 194/543 (35.73%), Postives = 305/543 (56.17%), Query Frame = 0

Query:   38 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDV-DGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDL--------NQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKPIMG---HDRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDD-VFRVWNMGFPFPEARQDTLKHMRSLEIFGPG-FTPQQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEASML 567
            R + + FKLRG ++K DA+   +S L+H +D  D ALD +LD     I++  LKSS++D   I  VV  L + E  +        ++ A+ + DAF +P+  Y+P  K F + +  +  ++ +A  +A ++R+RYQL  QR+ R++ F KP+      +    ++ ++ SL+G  G + L+G I+Q+EEG FYLED+T  IP+D +        +A + +G F EN++++  GE+L + +F+V   GFP  E R ++L  +  L+ FG G  + ++   L+++EK+A   + V L+D+ LD    ++KL  +  GYES          +FVLMG+F S P        S L   F  L  ++    P +  ++ F+F+PGP D G   VLPR  LP  LT  L   +  A F SNPCR++ +TQEIV FR+D++ +M R S++    +      +P    LV ++  Q HLCPLPL  +PI W YD+ L+LYP P  ++LGD S   + +Y G    +PG F  D +FAAY P T+ VE S +
Sbjct:    8 RRVQKKFKLRGFTLKVDALEEALSFLSHFQDAEDEALDLLLDE----IDKESLKSSILDGEAIRRVVNLLLEAETAVDPSSSAVSSRSALRVVDAFVIPRFCYDPIKKVF-YEYIGKLSIHGEARDKAALYRDRYQLLLQRLTRDKYFSKPVFDAEMAESESCEITSIHSLIGCTGRRWLIGVISQLEEGHFYLEDLTAAIPIDLA--------NAKITSGFFVENTVIVAEGELLSNGIFKVNTCGFPPLEDRDESLSLLMGLDFFGGGVISTEETLRLSVMEKKAVNDMFVILSDVWLDNEETMQKLSVVLDGYESV----EVVPSLFVLMGNFCSHPCNLSFHSYSNLRMQFAKLGEMITAH-PRINEQSRFLFIPGPDDAGPAKVLPRCALPNYLTEELQKLIPTAIFSSNPCRVKFYTQEIVFFRQDLLYRMRRSSLIPPSSE---ETTDPFEH-LVATITHQSHLCPLPLTVQPIIWNYDHCLQLYPTPHTIVLGDRSEQKAFKYTGITCFNPGSFSSDSTFAAYRPCTQEVELSAI 528

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BLAST of NO10G03890 vs. NCBI_GenBank
Match: XP_020604187.1 (DNA polymerase epsilon subunit 2-like [Orbicella faveolata])

HSP 1 Score: 321.6 bits (823), Expect = 4.800e-84
Identity = 201/539 (37.29%), Postives = 297/539 (55.10%), Query Frame = 0

Query:   34 AAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDLNQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKPIMGHDRNYL----KLVTVDSLLGTH---GEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDDVFRVWNMGFPFPEARQDTLKHMRSLEIF-GPGFTPQQYQ-DLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDD-SFAAYYPATRTVE 563
            A     I   FKL GLS+K DA   L  VL+   +V+  L+  LD I   +++  L SSLVDR I E  V+  ++   D N +A  I DAFS+P+ T+ P  K F  +         +  A++ +FRERY +  QR MR+ELF   + G +++ +     L TV+ LLG+    G+  +LG +TQ++EG++YLED TG + LD           A+   GL+TEN  VL  G   + VFR+  +GFP  E  Q T  H  S+  F GP  T  +    L  +E+E H  + V L+D+ LD+P  +EKLR LF GY +          +F+L G+FTS+P  HG      L   F G + L+  + P L   + F+FVPGP DPG G +LPR P+P+  T ++   +  + F +NPCR++  TQEI++FRED++ KM R+SI    +  D   +      LV+++L Q H+CP+P   RPI W  D++LR+YP+PDL+IL D     +     C   +P  F  ++ +F  Y+P+TR +E
Sbjct:   48 ATVRGKIVSTFKLHGLSLKTDASKFLTEVLSPLTEVE--LEDWLDKIVEGVQKQPLTSSLVDREIAEQAVQDCSQSSEDDNDKAFTIIDAFSVPRFTFNPDRKKFLPSGGSVSLHANNPNAKSEVFRERYNILHQRTMRHELFSPVVEGANQSQVAEKFALKTVEFLLGSTANLGQLIVLGMMTQIKEGKYYLEDPTGVVELDL--------RQANFHTGLYTENCFVLAEGTYEEGVFRIKALGFPPAEPGQVTRNHFGSVNFFGGPSSTSLKASVKLKAVERENHNAMFVMLSDVWLDQPRVMEKLRALFSGYST------MPPAMFILCGNFTSEP--HGPSHYHTLKRSFQGFAKLVA-EFPPLIENSRFVFVPGPQDPGPGNILPRPPIPSIFTSAVTEKVPLSVFTTNPCRIQYCTQEIIVFREDLVNKMCRNSINLPTELKDIPVQ------LVKTILAQAHICPIPPHVRPIYWTQDHSLRVYPVPDLMILADKYDPYTCSSLECTCTNPSSFARNEFAFKVYWPSTRELE 561

[Close]

BLAST of NO10G03890 vs. NCBI_GenBank
Match: XP_002444485.2 (DNA polymerase epsilon subunit B [Sorghum bicolor] >EES15109.2 hypothetical protein SORBI_3007G152900 [Sorghum bicolor])

HSP 1 Score: 321.2 bits (822), Expect = 6.300e-84
Identity = 194/552 (35.14%), Postives = 307/552 (55.62%), Query Frame = 0

Query:   30 SSTTAAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDV-DGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDLN---------QEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKP---IMGHDRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDD-VFRVWNMGFPFPEARQDTLKHMRSLEIFGPGFTP-QQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEASML 567
            ++ +AA  R + R F+LRG ++K DA+    + +    D  D ALD +LD     +++  L+SS++DR  +  VV  L + E  L+         + A+ + DAF +P+  Y+P  K F +    R  ++ +AG +A ++R+RYQ+  QR+ R++ F KP    +  + +  ++ ++ SL+G  G + ++G I+Q+EE +FYLED+TG +P+D S        +A + +G F EN++++  GE+L + +F+V   GFP  E R+ ++  +  L+ FG G  P ++   L+ LEK+A   + V L+D+ LD P  +EKL  +  GY+S          +FVLMG+F S+P         +L   F  L  ++   +  L   + F+FVPGP D G    LPR  LP  L   L   + +A FVSNPCR++ +TQEIV FR+D++ +M R  ++    +      E     LV ++  Q HLCPLPL  +PI W YD+ LRLYP P  ++LGD S   + +Y G    +PG F  D +FAAY P T+ VE S L
Sbjct:    2 AAPSAATRRKLQRKFRLRGFTLKVDALEEAAAFMDRFPDAEDDALDLLLDE----LDKEPLQSSILDRDAVRRVVALLVEAEEALDAASPAVTSARSALRVVDAFLVPRFHYDPIKKVF-YEHTGRLAVHGEAGDKASLYRDRYQVLLQRLARDKYFSKPAFDTVATEDSSCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLS--------NAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASVSLLMGLDFFGGGVIPSEEALRLSSLEKKAVNDMFVILSDVWLDNPETMEKLAVVLDGYDSV----EVVPSLFVLMGNFCSRPCNLAFNSFEELRFQFGKLGEMIAARS-RLKEHSRFLFVPGPDDAGPSKALPRCALPKYLIEELQKHIPNAIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEH----LVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVLGDKSEQKAFKYTGITCFNPGSFANDSTFAAYRPCTKEVELSAL 531

[Close]

BLAST of NO10G03890 vs. NCBI_GenBank
Match: XP_015638793.1 (PREDICTED: DNA polymerase epsilon subunit 2 [Oryza sativa Japonica Group] >EEC78576.1 hypothetical protein OsI_18564 [Oryza sativa Indica Group] >EEE62423.1 hypothetical protein OsJ_17214 [Oryza sativa Japonica Group])

HSP 1 Score: 320.9 bits (821), Expect = 8.200e-84
Identity = 196/553 (35.44%), Postives = 308/553 (55.70%), Query Frame = 0

Query:   30 SSTTAAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDV-DGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDENDLN---------QEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKP----IMGHDRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVLDD-VFRVWNMGFPFPEARQDTLKHMRSLEIFGPGFTP-QQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEASML 567
            ++ +AA  R + R FKLRG ++K DA+    + L    D  D ALD +LD     +++  L+SS++DR  +  VV  L + +  ++         + A+ + D+F +P+  Y+P  K F +    R  ++ +AG +A ++R+RYQ+  QR+ R+  F KP    +M  D N  ++ ++ SL+G  G + ++G I+Q+EE +FYLED+TG +P+D S        +A + +G F EN++++  GE+L + +F+V   GFP  E R+ +L  +  L+ FG G  P ++   L+ LEK+A   + V L+D+ LD    +EKL  +  GY+S  +       +FVLMG+F S+P         +L   F  L  ++   +  L   + F+F+PGP D G    LPR  LP  LT  L   + +A FVSNPCR++ +TQEIV FR+D++ +M R  ++    +      E     LV ++  Q HLCPLPL  +PI W YD+ LRLYP P  ++LGD S   + +Y G    +PG F  D +FAAY P T+ VE S L
Sbjct:    2 AAPSAATRRKLQRKFKLRGFTLKVDALEEAAAFLARFPDAEDDALDLLLDE----LDKEPLQSSILDRDAVRRVVALLVEADEAVDAASPAATSARSALRVVDSFVVPRFHYDPIKKVF-YEHTSRLAIHGEAGDKAALYRDRYQVLLQRLARDIYFSKPAFDTVMTEDDN-CEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLS--------NAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIPTEETVRLSTLEKKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEA----VPSLFVLMGNFCSRPCNLAFNSFEELRLQFGKLGEMIAARS-RLKEHSRFLFIPGPDDAGPSKALPRCALPKYLTEELQKHIPNAIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEH----LVATITHQSHLCPLPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQKAFKYTGITCFNPGSFANDSTFAAYRPCTKEVELSAL 531

[Close]

BLAST of NO10G03890 vs. NCBI_GenBank
Match: PKA49599.1 (DNA polymerase epsilon subunit 2 [Apostasia shenzhenica])

HSP 1 Score: 320.5 bits (820), Expect = 1.100e-83
Identity = 198/543 (36.46%), Postives = 301/543 (55.43%), Query Frame = 0

Query:   38 RAIFRAFKLRGLSVKADAV-AALVSVLTHEEDVDGALDAILDAIKGLIERGELKSSLVDRSIIETVVKQLTKDE--------NDLNQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNPDAGARARMFRERYQLARQRVMRNELFVKPIMGH---DRNYLKLVTVDSLLGTHGEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTENSLVLVGGEVL-DDVFRVWNMGFPFPEARQDTLKHMRSLEIFGPG-FTPQQYQDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTHLVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIFVPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIVLFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLKARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDSFAAYYPATRTVEASML 567
            R + + FKLRG ++K +A+  AL+ +    +  D ALD ++D     I++  LKSS++D+  +  VV  L + E        +  N+ A+ + DAF +P+  Y+   K F +    +  ++ DAG +  ++R+RYQL  QR+ R++ F KP+      D    ++  + SL+G  G + L+G I+Q+EEG FYLED+T  IP+D +        +A + +G F EN++++  GE+L    F+V   GFP  E R D+L  +  L+ FG G  + ++   L+ LEK+A   + V L+D+ LD   A+EKL  +  GYES          +FVLMG+F S+P  + +  +S L   F  L  ++K   P +  ++ F+F+PGP D G   VLPR  LP  LT  L   + +A F SNPCR++  TQEIV FR+D++ KM R S++    +      E     LV ++  Q HLCPLPL  +PI W YD+ LRLYP P  ++LGD S   +  Y G    +PG F  D +FAAY P  + VE S L
Sbjct:    8 RRVQKKFKLRGFTLKVEALEEALLFISRFPDAEDEALDLLVDE----IDKEPLKSSILDKEAVRRVVNLLLEAEAAVDPASSSASNRLALRVIDAFVIPRFRYDSIKKVF-YEHTGKLSIHGDAGDKVALYRDRYQLLLQRLTRDKYFSKPVFDTATVDSVSCEITPIQSLIGCAGRRWLMGVISQLEEGHFYLEDLTAAIPIDLT--------NAKITSGFFVENTIIVAEGELLPTGTFKVNTCGFPPLEDRDDSLSLLMGLDFFGAGILSTEETLRLSALEKKAVNDMFVILSDVWLDSEEAMEKLAVILDGYESV----EIVPTLFVLMGNFCSRP-CNLSFHSSTLRAQFGRLGEMIKAH-PRIEQQSRFLFLPGPDDAGPAKVLPRCALPKYLTEELQKHIPNAIFSSNPCRVKFHTQEIVFFRQDLLYKMRRSSLIPPSSEETSDPFEH----LVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVLGDRSEQKAFRYTGITCFNPGSFSTDSTFAAYRPCNQEVELSAL 527

The following BLAST results are available for this feature:

BLAST of NO10G03890 vs. NCBI_GenBank

BLAST of NO10G03890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_009844787.1	7.200e-88	36.16	hypothetical protein H257_17620 [Aphanomyces astac...	[more]
XP_020699377.1	3.600e-87	36.28	DNA polymerase epsilon subunit B [Dendrobium caten...	[more]
ORX56662.1	5.700e-85	34.41	DNA polymerase epsilon, subunit B [Piromyces finni...	[more]
XP_008791857.1	1.300e-84	36.01	PREDICTED: DNA polymerase epsilon subunit B [Phoen...	[more]
GAQ80362.1	1.700e-84	37.71	DNA polymerase epsilon subunit B2 [Klebsormidium n...	[more]
XP_020587022.1	1.700e-84	35.73	DNA polymerase epsilon subunit B [Phalaenopsis equ...	[more]
XP_020604187.1	4.800e-84	37.29	DNA polymerase epsilon subunit 2-like [Orbicella f...	[more]
XP_002444485.2	6.300e-84	35.14	DNA polymerase epsilon subunit B [Sorghum bicolor]...	[more]
XP_015638793.1	8.200e-84	35.44	PREDICTED: DNA polymerase epsilon subunit 2 [Oryza...	[more]
PKA49599.1	1.100e-83	36.46	DNA polymerase epsilon subunit 2 [Apostasia shenzh...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL052	nonsL052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR004	ncniR004	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR016	ngnoR016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001256	NSK001256	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO10G03890.1	NO10G03890.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585460	gene_3818	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_101029g1	gene4920	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO10G03890.1	NO10G03890.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO10G03890 ID=NO10G03890|Name=NO10G03890|organism=Nannochloropsis oceanica|type=gene|length=4696bp
CAATTTTTCCGGAGAAAATGCCCGGGACGTGCTGCGAGAAAAGACAGATC
TGCTCTCTCCACAAGGACACAGGCATTCGAAAAAGAGAAGAAGCTCGAAG
GGCCTGCATTCGCCCGAACTTGCCTCATGTCGCCGGCGCAGAAAGGACAT
GACACTTGGGCATTCACACTTATACAAACCAATCCTCCCCTACAAGCACA
TAGGTACATGTCGTCCTCTACGACGGCGGCGGCCAACCGTGCCATCTTCA
GGGCGTTTAAGCTGAGGGGTCTTAGTGTCAAGGCGGATGCAGTCGCGGCC
TTGGTCTCAGgtgggtaagcctagggcgagggagagaggagaggaaaaag
agacatagacaatgaggcatgtgcgaacacgtgatgatgtgacaagagac
agtgcaccatgtatgtttgtggtgatggctcctctagaatgatgaagcta
gaacctcacattccctcccctcccctccttgccccacctcccactccagT
CCTAACCCACGAAGAAGACGTGGACGGGGCACTAGACGCCATATTAGACG
CGATCAAAGGCCTGATTGAACGAGGTGAGCTAAAGTCGTCTCTTGTGGAC
AGGAGTATTATCGAGACGGTCGTAAAACAGTTGACCAAGGATGAAAATGA
TCTCAACCAGgtaaggtttagatagggagggcgagcgggaggagggagag
gaagaaagcaagaaaagaagaaaagcgactaagagggaaatatctcaata
ggggagggggaggtggaatgtagatgcatcaataatacactgttattgtc
gtcacggtcgctaatgccttcagtctatcatcttccccccccctcctttt
ctccttccttccccttccattgctgtaactacagGAAGCTGTGGCCATCT
GGGATGCGTTTAGCATGCCCAAGATGACCTATGAGCCGCAGACCAAGAGC
TTTGCCTTCACGTTTGACAAGCGCCGCAAGATGAACCCGGACGCGGGGGC
ACGgtgcgggagggagggagtgaggaagggaggggcaagaggtctgtccg
ccagcaatttcttgtctgttccctgcgcgaagatgctcccaagcccatga
gataaagatggggaaaacgcgaggatagaaggccctacaagtttccatgg
aacctcgcacactgacctttcccgccctccttccctccctcctttcctcc
cctcctcccgacctccttcccgccctccttccctccctccccagCGCCCG
CATGTTCCGGGAGCGCTACCAGCTGGCCCGGCAACGCGTGATGCGCAACG
AGCTCTTCGTCAAGCCCATCATGGGCCACGACCGCAACTATCTTAAGCTC
GTCACTGTTGACTCCCTGCTCGGCACGCACGgtagggagggagggaggga
gggagggagggagggagggaggggtcggtatcacaagtcacggccgacag
tagctaaagctggtcatgatgaagttaatcctgaggacacatgggccgct
ccatccgtccctccctccctccctccctccctccaagtatgttgtcctac
gtcactcactgctccctccctccctcccacgatcgtcgcagGCGAAAAGA
ATCTACTGGGGTGCATCACGCAGGTGGAGGAGGGACGTTTCTACCTCGAG
GACATGACAGgtctcaatcgagagagggagggaaggagggagggaggaag
ggaggaaggaagggagggaggaagggagggaagaatgacagcttctacac
cggtacggaacggatcaacaggctcaacctccccctctccctcatattcc
cccttcccttctccctccctccctcagGCCACATCCCGTTGGATTTCTCC
GACCTCCTCACCTCCCAAACGCATGACGCCTCCCTCCTCAACGGCCTCTT
CACTGAGAACTCCCTCGTCCTCGTCGGTGGGGAGGTTCTCGACGATGTCT
TCCGGGTATGGAACATGGGTTTCCCCTTCCCCGAAGCCAGgtacgtcctc
ctcctcttctttcttccttccctccctccctcccttcctccctccctccc
tccctccctccctccctcctcctcgtcaagaacttcaccggctcagacct
tgtattaatatccctccctccctccctccctccctccctccctccctcca
gACAAGACACCCTGAAGCACATGCGTTCCCTTGAGATTTTCGGCCCTGGG
TTCACCCCTCAGCAATACCAGGACTTGGCCCTCCTCGAGAAGGAGgtgcg
ttgccctccctccctccccccctccctccctcctcccttttctcatgtct
ctctctctcgcttcctcgtttcctcccatccacaaactccttctcctccc
cccccgtcccccctccctccctccctccctagGCCCACGGCATGCTCCTC
GTGAGCCTCGCAGACCTCCACCTCGACCGACCCACCGCCCTTGAAAAACT
CCGGgtagggagggcgggagggagggcgggagggagggagggaacaaggg
aaaaggagagcagtcgctgtgccagccccgtatctcactgtctaccggcc
gtcgaccgcccttccctccctccctccctccctccctccctccctcccta
ccccagACGCTCTTCCAGGGCTACGAGAGCGCTTATTCGGACGGGGCCTT
TACGCACCTCGTCTTCGTCCTGATGGGAGACTTCACCTCCAAGCCTGTCG
CGCACGGCAACGAAGGCACCTCCCAACTCTTAGgtacgtgtgtcctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
ctccctttttcccttcgctttctccttccctccttcgcgccctccctccc
tttccccctcagctctctaccccccctccctccctctctccctgcctccc
tccctccttcgtgcccgccctccatctctccaagacatgtcccttaaatc
tcttttcccttccctcccccccccctctttccttccctccccctcaccat
acagGCTACTTCGACGGTTTATCCTCCCTCCTCAAGCACGATGCTCCCAC
CCTCTGTGCTGAAGCCACCTTCATCTTCGTCCCCGGACCTCACGATCCAG
gtgataccctccctccctccctccctccccccctccctccctttcttcct
cctccctccctaccctcgggcatctctccctcagaaacacaaagtctgac
ttcttccgtcccttccccctccctcccctccctcccttcctccctccctc
ccttcaccagGCGCCGGTGCCGTCCTCCCTCGCGGGCCTCTCCCTGCGTC
CCTCACGCTCTCCCTGGCTTCAACCTTACACCATGCACACTTCGTCTCCA
ATCCCTGCCGAgtaaggagggagggagggaggcagggagggaggcactga
gggacctgaaatagcagtgtccagaggggggggaggaggaaggagggagg
aaaggagggagggttgctcctgaatagcaagttcctgatgagtcgacgtc
ttatgatgctcaccttcattatatccatccatctctccctccctccctcc
ctccctcccagCTCCGCCTCTTCACCCAAGAAATCGTCCTCTTCCGAGAA
GACATCATGAAGAAGATGCTCCGACACTCGATCCTCCAAGGCTGCAAAGA
CCACgtacgtacctctccctccccccctccctcccttcctccctccctcc
ctcctcttcccatctcatcaccgggacggacaagtggaagagcccttgat
gcgatacccctccattcatccctccctcccttccttcctcgctccctcct
tctccttcctccacccctcacctcccttcctccctcccttcctcctcttc
ccatctcatcaccagGACGGACACGCGGAGGAGCCTTTGGTCCGGTGCCT
CGTCCAATCCCTCCTCGATCAGGGCCACCTCTGCCCACTGCCTCTCAAGg
tacgtgcccttcctcctcccctccttccctgcctcttcttctcatctatc
tgcacagaggttgtctgacctacctacctacctccctccctccctccttc
agGCCCGCCCCATTGCCTGGGAGTACGACAATGCCCTCCGCCTCTACCCC
CTGCCCGACCTCCTCATCCTCGGCGATCATTCCATGAACACCTCCATTGA
GTATGCAGGGTGTCAGgtatgccctcccttcctcccttcctcccttcctc
ccttcctcccttcctcccccctcatcctcggtgatcattccatgaaaaca
tccattgagtagtccctccctccctcccttcttccctccttgcctgcttt
ggaccccttccctcaccctcccttcttccctcccttcctccctctttccc
tctctccctcccaacctcagGTCGTCTCTCCCGGCTGTTTCCCAGTCGAC
GATTCTTTCGCGGCCTACTATCCCGCCACCCGCACTGTGGAGGCCTCCAT
GTTGCCACACTGAGGAGGGAGGGAGAGAGAGAGGGAGGGAGGGAGGCGTG
GGTGTAGGTGTGTGTATGTATAAGAAAGAATGCGAGAAGACGAAAGACAG
GAGAGGAGAAGAAGGATAATCAATAGCACGAGAACGAAGGAGGGGAAGGA
GGAGGAGGAAGAGAGGGAAGGATGGAAGGAGGCAGGGAAAGAAGGAGAGG
AATCCTCTCAGACCTAGGGCCCCAGGCCAGCACCGACTTCATGCTA

protein sequence of NO10G03890.1

>NO10G03890.1-protein ID=NO10G03890.1-protein|Name=NO10G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MSPAQKGHDTWAFTLIQTNPPLQAHRYMSSSTTAAANRAIFRAFKLRGLS
VKADAVAALVSVLTHEEDVDGALDAILDAIKGLIERGELKSSLVDRSIIE
TVVKQLTKDENDLNQEAVAIWDAFSMPKMTYEPQTKSFAFTFDKRRKMNP
DAGARARMFRERYQLARQRVMRNELFVKPIMGHDRNYLKLVTVDSLLGTH
GEKNLLGCITQVEEGRFYLEDMTGHIPLDFSDLLTSQTHDASLLNGLFTE
NSLVLVGGEVLDDVFRVWNMGFPFPEARQDTLKHMRSLEIFGPGFTPQQY
QDLALLEKEAHGMLLVSLADLHLDRPTALEKLRTLFQGYESAYSDGAFTH
LVFVLMGDFTSKPVAHGNEGTSQLLGYFDGLSSLLKHDAPTLCAEATFIF
VPGPHDPGAGAVLPRGPLPASLTLSLASTLHHAHFVSNPCRLRLFTQEIV
LFREDIMKKMLRHSILQGCKDHDGHAEEPLVRCLVQSLLDQGHLCPLPLK
ARPIAWEYDNALRLYPLPDLLILGDHSMNTSIEYAGCQVVSPGCFPVDDS
FAAYYPATRTVEASMLPH*

Synonyms

Publications