NO10G02890, NO10G02890 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02890 vs. NCBI_GenBank
Match: XP_011401856.1 (Nucleosome-remodeling factor subunit BPTF [Auxenochlorella protothecoides] >KFM28809.1 Nucleosome-remodeling factor subunit BPTF [Auxenochlorella protothecoides]) HSP 1 Score: 104.0 bits (258), Expect = 6.900e-18 Identity = 80/271 (29.52%), Postives = 109/271 (40.22%), Query Frame = 0
Query: 372 KLSAPESIWVPPETAGHALPSEFPCSPADCSLVWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGMNKLLTPKARCSSWAYLDRINWPVYFHFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRR----GLCYDTESVERARHP-------DGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGL-PATWLCPEC 631
+L P + P + G AL C L+ Y LR S L ++PFP A + A S L+DE+HV +LR L + L P+ +LD + WP+Y +L+ G L+R EV+V ILE L N L+D + A + RR L E+ P D + DTC +C LGG+L+ CD CPA YH C+GE + L WLCPEC
Sbjct: 56 RLFPPPAEAALPASFGVALADSDECLDIPTDLLGSLAASYQTLRAFSWQLRLAPFPLAAYCAALAAEAASHLVDEVHVSMLRALMIDETAAERAQRALDPQ-------FLDALTWPLYLWDWLRL--------------------------SGSPLARG-----------EVKVKILESLANSLLDCITIRAEIDRREAAGQLVAGCEAGPAVAPPPQVAGALDHNTDTCVLCGLGGNLICCDGCPATYHMRCLGETSKSLGDGEWLCPEC 282
BLAST of NO10G02890 vs. NCBI_GenBank
Match: EXC04604.1 (Nucleosome-remodeling factor subunit BPTF [Morus notabilis]) HSP 1 Score: 100.1 bits (248), Expect = 9.900e-17 Identity = 71/293 (24.23%), Postives = 119/293 (40.61%), Query Frame = 0
Query: 378 SIWVPPETAGHALPSEFPCSPADCSL------VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGM-NKLLTPKARCSSWAYLDRINWPVYF--HFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRR------------------------------GLCYDTESVERARHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
S+W PE LP + P+ SL + Y CLR+ S L +SPF + + + L D +H+ +LR L + + + ++ + R +W +LD I WP++ +F + E L ++D S +L ++ + +++ IL LC+ L+++ + + L RR G C + E ++ + D + D C +C + G L+ CD CPA YH CVG + LP W CPEC
Sbjct: 433 SVWKEPEKPVVVLPPKLQLPPSSQSLDLKDIPILDLFSVYACLRSFSTLLFLSPFELEEFVAAVKCKSPTSLFDNVHISILRTLRKHLEYLSNEGSESASDCLRSLNWNFLDVITWPMFMAEYFVIHGSE-------------LKPSFD--------LSSLKLFKADYYQQPASIKIEILRCLCDDLIEVEAIRSELNRRSLAAEPDMSYERNLNHRVGKKRRASLGISGGSCLEEEDID--NNNDWNYDECCLCKMDGSLICCDGCPAAYHSSCVGIANEHLPEGDWYCPEC 702
BLAST of NO10G02890 vs. NCBI_GenBank
Match: XP_024027302.1 (DDT domain-containing protein PTM isoform X1 [Morus notabilis] >XP_024027303.1 DDT domain-containing protein PTM isoform X1 [Morus notabilis]) HSP 1 Score: 100.1 bits (248), Expect = 9.900e-17 Identity = 71/293 (24.23%), Postives = 119/293 (40.61%), Query Frame = 0
Query: 378 SIWVPPETAGHALPSEFPCSPADCSL------VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGM-NKLLTPKARCSSWAYLDRINWPVYF--HFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRR------------------------------GLCYDTESVERARHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
S+W PE LP + P+ SL + Y CLR+ S L +SPF + + + L D +H+ +LR L + + + ++ + R +W +LD I WP++ +F + E L ++D S +L ++ + +++ IL LC+ L+++ + + L RR G C + E ++ + D + D C +C + G L+ CD CPA YH CVG + LP W CPEC
Sbjct: 433 SVWKEPEKPVVVLPPKLQLPPSSQSLDLKDIPILDLFSVYACLRSFSTLLFLSPFELEEFVAAVKCKSPTSLFDNVHISILRTLRKHLEYLSNEGSESASDCLRSLNWNFLDVITWPMFMAEYFVIHGSE-------------LKPSFD--------LSSLKLFKADYYQQPASIKIEILRCLCDDLIEVEAIRSELNRRSLAAEPDMSYERNLNHRVGKKRRASLGISGGSCLEEEDID--NNNDWNYDECCLCKMDGSLICCDGCPAAYHSSCVGIANEHLPEGDWYCPEC 702
BLAST of NO10G02890 vs. NCBI_GenBank
Match: XP_024027305.1 (DDT domain-containing protein PTM isoform X3 [Morus notabilis]) HSP 1 Score: 100.1 bits (248), Expect = 9.900e-17 Identity = 71/293 (24.23%), Postives = 119/293 (40.61%), Query Frame = 0
Query: 378 SIWVPPETAGHALPSEFPCSPADCSL------VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGM-NKLLTPKARCSSWAYLDRINWPVYF--HFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRR------------------------------GLCYDTESVERARHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
S+W PE LP + P+ SL + Y CLR+ S L +SPF + + + L D +H+ +LR L + + + ++ + R +W +LD I WP++ +F + E L ++D S +L ++ + +++ IL LC+ L+++ + + L RR G C + E ++ + D + D C +C + G L+ CD CPA YH CVG + LP W CPEC
Sbjct: 433 SVWKEPEKPVVVLPPKLQLPPSSQSLDLKDIPILDLFSVYACLRSFSTLLFLSPFELEEFVAAVKCKSPTSLFDNVHISILRTLRKHLEYLSNEGSESASDCLRSLNWNFLDVITWPMFMAEYFVIHGSE-------------LKPSFD--------LSSLKLFKADYYQQPASIKIEILRCLCDDLIEVEAIRSELNRRSLAAEPDMSYERNLNHRVGKKRRASLGISGGSCLEEEDID--NNNDWNYDECCLCKMDGSLICCDGCPAAYHSSCVGIANEHLPEGDWYCPEC 702
BLAST of NO10G02890 vs. NCBI_GenBank
Match: XP_024027304.1 (DDT domain-containing protein PTM isoform X2 [Morus notabilis]) HSP 1 Score: 100.1 bits (248), Expect = 9.900e-17 Identity = 71/293 (24.23%), Postives = 119/293 (40.61%), Query Frame = 0
Query: 378 SIWVPPETAGHALPSEFPCSPADCSL------VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGM-NKLLTPKARCSSWAYLDRINWPVYF--HFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRR------------------------------GLCYDTESVERARHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
S+W PE LP + P+ SL + Y CLR+ S L +SPF + + + L D +H+ +LR L + + + ++ + R +W +LD I WP++ +F + E L ++D S +L ++ + +++ IL LC+ L+++ + + L RR G C + E ++ + D + D C +C + G L+ CD CPA YH CVG + LP W CPEC
Sbjct: 433 SVWKEPEKPVVVLPPKLQLPPSSQSLDLKDIPILDLFSVYACLRSFSTLLFLSPFELEEFVAAVKCKSPTSLFDNVHISILRTLRKHLEYLSNEGSESASDCLRSLNWNFLDVITWPMFMAEYFVIHGSE-------------LKPSFD--------LSSLKLFKADYYQQPASIKIEILRCLCDDLIEVEAIRSELNRRSLAAEPDMSYERNLNHRVGKKRRASLGISGGSCLEEEDID--NNNDWNYDECCLCKMDGSLICCDGCPAAYHSSCVGIANEHLPEGDWYCPEC 702
BLAST of NO10G02890 vs. NCBI_GenBank
Match: XP_003540620.1 (PREDICTED: uncharacterized protein LOC100791832 [Glycine max] >KRH24103.1 hypothetical protein GLYMA_12G021900 [Glycine max]) HSP 1 Score: 99.0 bits (245), Expect = 2.200e-16 Identity = 75/284 (26.41%), Postives = 117/284 (41.20%), Query Frame = 0
Query: 384 ETAGHALPS-EFPCSPADCSL----VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGMNKLLTPKARC---SSWAYLDRINWPVYFHFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRRGLC------------YDTESVERA----------------RHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
E LP +FP S + +L V Y CLR+ S L +SPF L+ + + S+L D IHV +L+ L + + + N+ + C SW +LD + WP++ +L G + G+ L + ++ + V +V IL++LCN +++ + + L RR L +DT +RA D + D C +C + G L+ CD CPA +H CVG LP W CPEC
Sbjct: 458 EQCSDPLPKLQFPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKNLEYLS--NEGCQSASNCLRNLSWDFLDLVTWPIFMAEYLLIH--------GSGFKT------------GFDLKHLMFKTDYYKQPVTAKVEILQYLCNDMIESEAIRSELNRRSLVTETDVGFDQNMYFDTGKKKRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDHLPEGDWYCPEC 719
BLAST of NO10G02890 vs. NCBI_GenBank
Match: KHN05492.1 (Nucleosome-remodeling factor subunit BPTF [Glycine soja]) HSP 1 Score: 99.0 bits (245), Expect = 2.200e-16 Identity = 75/284 (26.41%), Postives = 117/284 (41.20%), Query Frame = 0
Query: 384 ETAGHALPS-EFPCSPADCSL----VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGMNKLLTPKARC---SSWAYLDRINWPVYFHFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRRGLC------------YDTESVERA----------------RHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
E LP +FP S + +L V Y CLR+ S L +SPF L+ + + S+L D IHV +L+ L + + + N+ + C SW +LD + WP++ +L G + G+ L + ++ + V +V IL++LCN +++ + + L RR L +DT +RA D + D C +C + G L+ CD CPA +H CVG LP W CPEC
Sbjct: 458 EQCSDPLPKLQFPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKNLEYLS--NEGCQSASNCLRNLSWDFLDLVTWPIFMAEYLLIH--------GSGFKT------------GFDLKHLMFKTDYYKQPVTAKVEILQYLCNDMIESEAIRSELNRRSLVTETDVGFDQNMYFDTGKKKRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDHLPEGDWYCPEC 719
BLAST of NO10G02890 vs. NCBI_GenBank
Match: KRH24102.1 (hypothetical protein GLYMA_12G021900 [Glycine max]) HSP 1 Score: 99.0 bits (245), Expect = 2.200e-16 Identity = 75/284 (26.41%), Postives = 117/284 (41.20%), Query Frame = 0
Query: 384 ETAGHALPS-EFPCSPADCSL----VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGMNKLLTPKARC---SSWAYLDRINWPVYFHFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRRGLC------------YDTESVERA----------------RHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
E LP +FP S + +L V Y CLR+ S L +SPF L+ + + S+L D IHV +L+ L + + + N+ + C SW +LD + WP++ +L G + G+ L + ++ + V +V IL++LCN +++ + + L RR L +DT +RA D + D C +C + G L+ CD CPA +H CVG LP W CPEC
Sbjct: 458 EQCSDPLPKLQFPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKNLEYLS--NEGCQSASNCLRNLSWDFLDLVTWPIFMAEYLLIH--------GSGFKT------------GFDLKHLMFKTDYYKQPVTAKVEILQYLCNDMIESEAIRSELNRRSLVTETDVGFDQNMYFDTGKKKRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDHLPEGDWYCPEC 719
BLAST of NO10G02890 vs. NCBI_GenBank
Match: KRH24104.1 (hypothetical protein GLYMA_12G021900 [Glycine max]) HSP 1 Score: 99.0 bits (245), Expect = 2.200e-16 Identity = 75/284 (26.41%), Postives = 117/284 (41.20%), Query Frame = 0
Query: 384 ETAGHALPS-EFPCSPADCSL----VWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGMNKLLTPKARC---SSWAYLDRINWPVYFHFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSRELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRRGLC------------YDTESVERA----------------RHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPEC 631
E LP +FP S + +L V Y CLR+ S L +SPF L+ + + S+L D IHV +L+ L + + + N+ + C SW +LD + WP++ +L G + G+ L + ++ + V +V IL++LCN +++ + + L RR L +DT +RA D + D C +C + G L+ CD CPA +H CVG LP W CPEC
Sbjct: 458 EQCSDPLPKLQFPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKNLEYLS--NEGCQSASNCLRNLSWDFLDLVTWPIFMAEYLLIH--------GSGFKT------------GFDLKHLMFKTDYYKQPVTAKVEILQYLCNDMIESEAIRSELNRRSLVTETDVGFDQNMYFDTGKKKRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDHLPEGDWYCPEC 719
BLAST of NO10G02890 vs. NCBI_GenBank
Match: XP_009122878.1 (PREDICTED: DDT domain-containing protein PTM [Brassica rapa]) HSP 1 Score: 97.8 bits (242), Expect = 4.900e-16 Identity = 73/246 (29.67%), Postives = 106/246 (43.09%), Query Frame = 0
Query: 390 LPSEFPCSPADCSLVWRALGCYTCLRTLSRFLAVSPFPALALLRGMCAPQRSMLLDEIHVQLLRVLARGYKGMGGM-NKLLTPKARCSSWAYLDRINWPVYFHFFLKAREEISWATWGDDAEVLAQAWDEEEEGKGWALSR-ELAAEEWQRTSVEVRVGILEWLCNRLMDLPEVGAVLGRRGLCYDTESVERARHPDGHMDTCAVCTLGGDLVLCDACPAVYHYGCVGEKLQGLP-ATWLCPECRF 633
LP P D + YT LR+ S L +SPF + + S+L D IHV LL++L + + + G ++ T R W LD +N+P+Y +L + + G G L+R E+ R + ++ IL LC +MD V + L +R S + + +G D C +C + G LV CD CPA YH C+G L LP W CPEC F
Sbjct: 700 LPPSSPNLNLDGLPIPYVFATYTFLRSFSTVLFLSPFELKDFVEALRCTSPSLLFDSIHVSLLQILRKDLEKLAGEDDQSATLCLRSLDWDMLDVVNYPLYVVEYL--------------------LFSGSKHGPGVDLARFNFFRNEYFRLPMTLKTEILTCLCGDMMDAEVVISELNKR-------SADGSSDRNGGED-CFICKMDGKLVCCDGCPAAYHSKCIGVALDLLPEGAWYCPECSF 917 The following BLAST results are available for this feature:
BLAST of NO10G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02890 ID=NO10G02890|Name=NO10G02890|organism=Nannochloropsis oceanica|type=gene|length=8034bpback to top protein sequence of NO10G02890.1 >NO10G02890.1-protein ID=NO10G02890.1-protein|Name=NO10G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=2493bpback to top protein sequence of NO10G02890.2 >NO10G02890.2-protein ID=NO10G02890.2-protein|Name=NO10G02890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=2482bpback to top Synonyms
Publications
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