NO10G01370, NO10G01370 (gene) Nannochloropsis oceanica

Overview
NameNO10G01370
Unique NameNO10G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3164
Alignment locationchr10:401938..405101 +

Link to JBrowse

Properties
Property NameValue
DescriptionAtp-dependent dna helicase q3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:401938..405101 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0005524ATP binding
GO:0004386helicase activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
Homology
BLAST of NO10G01370 vs. NCBI_GenBank
Match: EWM25427.1 (atp-dependent dna helicase q3 [Nannochloropsis gaditana])

HSP 1 Score: 451.1 bits (1159), Expect = 7.900e-123
Identity = 270/474 (56.96%), Postives = 319/474 (67.30%), Query Frame = 0
Query:   20 METQMLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEEL 494
            ++ ++++VLR  FGL  FR+ Q DVI HVL GGSGLVL PTGGGKSLCYQLPALL DGVT+V+SPLI+LM DQVTAL+ +G+ AR  SS+ D       L +L   P+P VK+LY+TPERL++PSF P+LQQLHAR LLAA  VDEAHCISQWGHDFRP+YR+L  +RA FPS+PCL LTATATP VQRDI   L LPPS VF++SFDRP+LFYRVEYK LL D   VLA+AIK  IG       + G+ G               XXXXXXXXXXXXXXXXXXX       +R+G                                 GGSAIVYCWK   C+ LA  L  RG+  LAYHGK+ D +R+ VQ +F EG V+VV A+ AFGMGIDKADVR+V HW +P +LEAFYQESGRAGRDG PA SLLFY   D   R ++L K L EG  E GR   K++ VERK E+L
Sbjct:   16 LDARIVEVLRIAFGLQTFRQPQKDVIKHVLQGGSGLVLLPTGGGKSLCYQLPALLLDGVTVVVSPLIALMNDQVTALRKKGIDARYCSSSLDPYLNKDILDDLRLRPEPRVKLLYVTPERLTTPSFLPVLQQLHARKLLAALIVDEAHCISQWGHDFRPSYRRLEEVRALFPSLPCLGLTATATPRVQRDIVSTLRLPPSHVFRKSFDRPSLFYRVEYKPLLPDAQEVLATAIKQAIG-----WRESGQGG-------------VPXXXXXXXXXXXXXXXXXXXXXXXXXXNRLG-----------------------------QNCAGGSAIVYCWKRETCEELARALEGRGLSALAYHGKLPDARRRHVQAMFVEGGVQVVAATLAFGMGIDKADVRVVAHWNIPPSLEAFYQESGRAGRDGGPALSLLFYCPRDAEGRFHMLHKEL-EGHGEAGR--EKQQAVERKKEQL 439          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_021615791.1 (ATP-dependent DNA helicase Q-like 3 [Manihot esculenta] >XP_021615793.1 ATP-dependent DNA helicase Q-like 3 [Manihot esculenta] >XP_021615799.1 ATP-dependent DNA helicase Q-like 3 [Manihot esculenta] >XP_021615808.1 ATP-dependent DNA helicase Q-like 3 [Manihot esculenta])

HSP 1 Score: 308.5 bits (789), Expect = 6.300e-80
Identity = 181/494 (36.64%), Postives = 257/494 (52.02%), Query Frame = 0
Query:   24 MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++++LR  FG ++FR  Q++ I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV AL+ +G+ A   SS Q +   N+   +L +  KP  ++LY+TPE +++P F   L ++HARG L   A+DEAHCIS WGHDFRP+YR+L  +R+  P VP LALTATA P VQ+D+   L L   +V K SF+RPN++Y V YK LL D +  L+  +KS     VC                                                                                          AI+YC +   CD+L+A L+K GI   AYH  + +  R  V   +    ++VV A+ AFGMGID+ DVR+V H+ VP ++EAFYQESGRAGRD  P  SLL+Y   D    ++IL        ++     S+++  ++   +  ++ EY  EG GC R+K+L  FGE
Sbjct:   24 LVKLLRWHFGFSDFRGKQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTQTSHVKNKIHEDLDS-GKPSTRLLYVTPELIATPGFTSKLTRIHARGSLKLIAIDEAHCISTWGHDFRPSYRKLSSMRSCLPDVPILALTATAVPKVQKDVIDSLCLQDPLVLKSSFNRPNIYYEVRYKDLLDDAYADLSFVLKS--SGDVC------------------------------------------------------------------------------------------AIIYCLERTTCDVLSAHLSKNGISCAAYHAGLNNKLRSSVLDDWMSSKIQVVVATVAFGMGIDRKDVRIVCHFNVPKSMEAFYQESGRAGRDQLPCRSLLYYGVDDRKKMEFILRSA---ASKQSESSSSQDRLSKKSISDFNQMVEYC-EGSGCRRKKILESFGE 420          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_006467040.1 (PREDICTED: ATP-dependent DNA helicase Q-like 3 isoform X1 [Citrus sinensis])

HSP 1 Score: 307.0 bits (785), Expect = 1.800e-79
Identity = 183/494 (37.04%), Postives = 255/494 (51.62%), Query Frame = 0
Query:   24 MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++++LR  FG  +FR+ Q+D I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV  LQ +G+ A   SS Q      +   +L +  KP +++LY+TPE  ++P F   L+++H+RGLL   A+DEAHCIS WGHDFRP+YR+L  +R   P VP LALTATA P VQ+D+   L L   +V K SF+RPNLFY V YK LL D +  L S +K+            G+                                                                                   AIVYC +   CD L+A L+  GI   AYH  + D  R  V   +     +VV A+ AFGMGID+ DVRLV H+ +P ++EAFYQESGRAGRD  P+ SLL+Y   D    ++IL+K   +  +      ++E+  ++   +  ++ +Y  EG GC R+K+L  FGE
Sbjct:   26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLQEKGIAAEFLSSTQTMQVKTKIYEDLDS-GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-----------NGDT---------------------------------------------------------------------------------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS---FSTRERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGE 422          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_006467041.1 (PREDICTED: ATP-dependent DNA helicase Q-like 3 isoform X2 [Citrus sinensis])

HSP 1 Score: 307.0 bits (785), Expect = 1.800e-79
Identity = 183/494 (37.04%), Postives = 255/494 (51.62%), Query Frame = 0
Query:   24 MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++++LR  FG  +FR+ Q+D I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV  LQ +G+ A   SS Q      +   +L +  KP +++LY+TPE  ++P F   L+++H+RGLL   A+DEAHCIS WGHDFRP+YR+L  +R   P VP LALTATA P VQ+D+   L L   +V K SF+RPNLFY V YK LL D +  L S +K+            G+                                                                                   AIVYC +   CD L+A L+  GI   AYH  + D  R  V   +     +VV A+ AFGMGID+ DVRLV H+ +P ++EAFYQESGRAGRD  P+ SLL+Y   D    ++IL+K   +  +      ++E+  ++   +  ++ +Y  EG GC R+K+L  FGE
Sbjct:   26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLQEKGIAAEFLSSTQTMQVKTKIYEDLDS-GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-----------NGDT---------------------------------------------------------------------------------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS---FSTRERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGE 422          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_012065338.1 (ATP-dependent DNA helicase Q-like 3 isoform X1 [Jatropha curcas])

HSP 1 Score: 306.6 bits (784), Expect = 2.400e-79
Identity = 179/494 (36.23%), Postives = 259/494 (52.43%), Query Frame = 0
Query:   24 MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++++LR  FG ++FR  Q++ I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV AL+ +G+ A   SS Q +   N+   +L +  KP V++LY+TPE +++  F   L ++HARG L   A+DEAHCIS WGHDFRP+YR+L  ++   P +P LALTATA+P VQRD+   L L   ++ K SF+RPN++Y V YK LL D +  L+S +KS     VC                                                                                          AI+YC +   CD L+A L++ GI + AYH  + +  R  V   +    ++VV A+ AFGMGID+ DVR+V H+ +P ++EAFYQESGRAGRD  P  SLL+Y   D    ++IL      G ++     S+++  ++   +  ++ EY  EG GC R+K+L  FGE
Sbjct:   24 LVKLLRWHFGYSDFRAKQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTQTSQVKNKIHEDLDS-GKPSVRLLYVTPELIATAGFMSKLTKIHARGFLNLIAIDEAHCISSWGHDFRPSYRKLSTLKNRLPDIPTLALTATASPEVQRDVIESLCLQDPLILKSSFNRPNIYYEVRYKDLLDDAYADLSSVLKS--SGDVC------------------------------------------------------------------------------------------AIIYCLERTTCDGLSAHLSQNGISSSAYHAGLNNKLRTTVLDDWISSKIQVVVATVAFGMGIDRKDVRMVCHFNIPKSMEAFYQESGRAGRDQLPCKSLLYYGVDDRKRMEFILRTA---GSKKSQTSSSQDESSKKSLSDFSQMVEYC-EGSGCRRKKILESFGE 420          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_024036410.1 (ATP-dependent DNA helicase Q-like 3 isoform X3 [Citrus clementina])

HSP 1 Score: 306.6 bits (784), Expect = 2.400e-79
Identity = 182/494 (36.84%), Postives = 256/494 (51.82%), Query Frame = 0
Query:   24 MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++++LR  FG  +FR+ Q+D I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV  L+ +G+ A   SS Q      +   +L +  KP +++LY+TPE  ++P F   L+++H+RGLL   A+DEAHCIS WGHDFRP+YR+L  +R   P VP LALTATA P VQ+D+ + L L   +V K SF+RPNLFY V YK LL D +  L S +K+            G+                                                                                   AIVYC +   CD L+A L+  GI   AYH  + D  R  V   +     +VV A+ AFGMGID+ DVRLV H+ +P ++EAFYQESGRAGRD  P+ SLL+Y   D    ++IL+K   +  +      ++E+  ++   +  ++ +Y  EG GC R+K+L  FGE
Sbjct:   26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAAEFLSSTQTMQVKTKIYEDLDS-GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMVSLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-----------NGDT---------------------------------------------------------------------------------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS---FSTRERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGE 422          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_024036411.1 (ATP-dependent DNA helicase Q-like 3 isoform X4 [Citrus clementina])

HSP 1 Score: 306.6 bits (784), Expect = 2.400e-79
Identity = 182/494 (36.84%), Postives = 256/494 (51.82%), Query Frame = 0
Query:   24 MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++++LR  FG  +FR+ Q+D I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV  L+ +G+ A   SS Q      +   +L +  KP +++LY+TPE  ++P F   L+++H+RGLL   A+DEAHCIS WGHDFRP+YR+L  +R   P VP LALTATA P VQ+D+ + L L   +V K SF+RPNLFY V YK LL D +  L S +K+            G+                                                                                   AIVYC +   CD L+A L+  GI   AYH  + D  R  V   +     +VV A+ AFGMGID+ DVRLV H+ +P ++EAFYQESGRAGRD  P+ SLL+Y   D    ++IL+K   +  +      ++E+  ++   +  ++ +Y  EG GC R+K+L  FGE
Sbjct:   26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAAEFLSSTQTMQVKTKIYEDLDS-GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMVSLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-----------NGDT---------------------------------------------------------------------------------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS---FSTRERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGE 422          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_006383035.1 (ATP-dependent DNA helicase Q-like 3 isoform X6 [Populus trichocarpa] >PNT36091.1 hypothetical protein POPTR_005G107400v3 [Populus trichocarpa])

HSP 1 Score: 305.8 bits (782), Expect = 4.100e-79
Identity = 189/518 (36.49%), Postives = 266/518 (51.35%), Query Frame = 0
Query:    5 LEPTPPPTARATSSAMETQ-----MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++ +P P  + TSS  E +     ++++LR  FG  +FR  Q++ I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV AL+ +G+ A   SS Q +S  N+   +L +  KP V++LY+TPE +++P F   L ++H RGLL   A+DEAHCIS WGHDFRP+YR+L  +R   P VP LALTATA P VQ D+   L L   +V   SF+RPN++Y V YK LL D +  L+S +KS  G  +C                                                                                          AIVYC +   CD L+A L+K GI + AYH  + +  R  V   +    ++VV A+ AFGMGID+ DVR+V H+ +P ++E+FYQESGRAGRD  P+ SLL+Y   D    ++IL       E +  +  S + E+ +K      +     EG GC R+K+L  FGE
Sbjct:    1 MKKSPLPMVQNTSSKDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALAKRGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTQTSSVRNKIHEDLDS-GKPSVRLLYVTPELIATPGFMSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPVLALTATAAPKVQNDVIESLCLQDPLVLSSSFNRPNIYYEVRYKDLLDDAYADLSSVLKS-CGD-IC------------------------------------------------------------------------------------------AIVYCLERTTCDGLSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVVATVAFGMGIDRKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSLLYYGVDDHKKMEFILR----NAENKKLQSSSSKGELSKKSLTDFNLMIEYCEGSGCRRKKILESFGE 421          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_024457273.1 (ATP-dependent DNA helicase Q-like 3 isoform X5 [Populus trichocarpa])

HSP 1 Score: 305.8 bits (782), Expect = 4.100e-79
Identity = 189/518 (36.49%), Postives = 266/518 (51.35%), Query Frame = 0
Query:    5 LEPTPPPTARATSSAMETQ-----MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            ++ +P P  + TSS  E +     ++++LR  FG  +FR  Q++ I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV AL+ +G+ A   SS Q +S  N+   +L +  KP V++LY+TPE +++P F   L ++H RGLL   A+DEAHCIS WGHDFRP+YR+L  +R   P VP LALTATA P VQ D+   L L   +V   SF+RPN++Y V YK LL D +  L+S +KS  G  +C                                                                                          AIVYC +   CD L+A L+K GI + AYH  + +  R  V   +    ++VV A+ AFGMGID+ DVR+V H+ +P ++E+FYQESGRAGRD  P+ SLL+Y   D    ++IL       E +  +  S + E+ +K      +     EG GC R+K+L  FGE
Sbjct:    1 MKKSPLPMVQNTSSKDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALAKRGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTQTSSVRNKIHEDLDS-GKPSVRLLYVTPELIATPGFMSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPVLALTATAAPKVQNDVIESLCLQDPLVLSSSFNRPNIYYEVRYKDLLDDAYADLSSVLKS-CGD-IC------------------------------------------------------------------------------------------AIVYCLERTTCDGLSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVVATVAFGMGIDRKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSLLYYGVDDHKKMEFILR----NAENKKLQSSSSKGELSKKSLTDFNLMIEYCEGSGCRRKKILESFGE 421          
BLAST of NO10G01370 vs. NCBI_GenBank
Match: XP_011022243.1 (PREDICTED: ATP-dependent DNA helicase Q-like 3 isoform X1 [Populus euphratica] >XP_011022244.1 PREDICTED: ATP-dependent DNA helicase Q-like 3 isoform X1 [Populus euphratica])

HSP 1 Score: 305.4 bits (781), Expect = 5.400e-79
Identity = 190/518 (36.68%), Postives = 264/518 (50.97%), Query Frame = 0
Query:    5 LEPTPPPTARATSSAMETQ-----MLQVLRSTFGLNEFREMQMDVISHVLHGGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARGVKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQQLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTATATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLASAIKSEIGPFVCQATKKGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSFFQSRIGAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYALEGGGCWRRKLLAYFGE 518
            +  +P P  + TSS  E +     ++++LR  FG  +FR  Q++ I  VL G     L PTGGGKS+CYQ+PAL   G+ +V+SPLI+LM++QV AL+ +G+ A   SS Q +S  N+   +L +  KP V++LY+TPE +++P F   L ++H RGL    A+DEAHCIS WGHDFRP+YR+L  +R   P VP LALTATA P VQ D+   L L   +V K SF+RPN++Y V  K LL D +  L+S +KS  G  VC                                                                                          AIVYC +   CD L+A L+K GI + AYH  + +  R  V   +    ++VV A+ AFGMGID+ DVR+V H+ +P ++E+FYQESGRAGRD  P+ SLL+Y   D    ++IL       E +  +  S E E+ +K      +     EG GC R+K+L  FGE
Sbjct:    1 MRKSPLPMVQNTSSMDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALAKHGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTQTSSVRNKIHEDLDS-GKPSVRLLYVTPELIATPGFMSKLTKIHTRGLFNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPVLALTATAAPKVQNDVIKSLCLQDPLVLKSSFNRPNIYYEVRCKDLLDDAYADLSSVLKS-CGD-VC------------------------------------------------------------------------------------------AIVYCLERTTCDGLSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVVATVAFGMGIDRKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSLLYYGVDDRKKMEFILR----NAENKKLQSSSSEGELSKKSLTDFNLMIEYCEGSGCRRKKILESFGE 421          
The following BLAST results are available for this feature:
BLAST of NO10G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25427.17.900e-12356.96atp-dependent dna helicase q3 [Nannochloropsis gad... [more]
XP_021615791.16.300e-8036.64ATP-dependent DNA helicase Q-like 3 [Manihot escul... [more]
XP_006467040.11.800e-7937.04PREDICTED: ATP-dependent DNA helicase Q-like 3 iso... [more]
XP_006467041.11.800e-7937.04PREDICTED: ATP-dependent DNA helicase Q-like 3 iso... [more]
XP_012065338.12.400e-7936.23ATP-dependent DNA helicase Q-like 3 isoform X1 [Ja... [more]
XP_024036410.12.400e-7936.84ATP-dependent DNA helicase Q-like 3 isoform X3 [Ci... [more]
XP_024036411.12.400e-7936.84ATP-dependent DNA helicase Q-like 3 isoform X4 [Ci... [more]
XP_006383035.14.100e-7936.49ATP-dependent DNA helicase Q-like 3 isoform X6 [Po... [more]
XP_024457273.14.100e-7936.49ATP-dependent DNA helicase Q-like 3 isoform X5 [Po... [more]
XP_011022243.15.400e-7936.68PREDICTED: ATP-dependent DNA helicase Q-like 3 iso... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001005NSK001005Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01370.1NO10G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540828gene_4079Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g115gene5139Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01370.1NO10G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01370 ID=NO10G01370|Name=NO10G01370|organism=Nannochloropsis oceanica|type=gene|length=3164bp
ACAACCCTTTCACAGTGTTAAAGAGATGGCACATCCTCTCGAGCCAACTC
CACCGCCTACGGCCAGGGCCACATCGTCGGCCATGGAAACGCAGATGCTC
CAGGTGCTGCGGTCCACATTTGGCCTGAACGAGTTCAGGGAAATGCAAAT
GGACGTCATTTCCCACGTCCTCCACGGCGGCTCCGGTCTGGTCCTCTTCC
CCACGGGCGGGGGCAAGTCTCTCTGCTACCAGCTCCCTGCCCTCCTTTCC
GACGGTGTTACCATTGTTATAAGCCCCCTCATCTCCCTGATGCAAGACCA
AGTTACTGCCCTGCAGGCCCGAGGGGTAAAAGCACGCAACTTCAGCTCCG
CCCAAGACGCCTCCACCATTAATCAGACCCTTGCTGAACTCGCAGCGCTC
CCCAAGCCTCATGTCAAGATCCTCTATATCACCCCTGAGCGGCTCTCCTC
CCCGTCCTTTGCCCCCATTCTCCAGCAGCTCCACGCTCGTGGCCTCCTGG
CCGCATTTGCTGTCGACGAGGCCCACTGTATTTCTCAGgtacgctccttt
cttaagcgcctcctattttcggctgtttcgtcccttttatttttggaagc
ggatttggatcaacacaaatgtccttcttcatgccacttttcagttatat
ttccttatccctccctccctccctcccttcctcaccttttccagTGGGGC
CACGATTTCCGTCCGGCCTACCGCCAGCTGGGAATGATTCGGGCCGCATT
CCCTTCCGTCCCCTGCCTTGCCCTCACCGCCACCGCCACTCCATCTGTGC
AACGAGACATTCAGATGCAGCTCTCCCTCCCTCCCTCCGTCGTCTTCAAG
CGCTCCTTCGATCGTCCCAATCTGTTTTATCGCGTGGAGTACAAGTCTTT
ATTGAGAGACATTCATGGTGTGCTTGCCTCAGCGATAAAAAGCGAGATCG
GCCCATTCGTGTGTCAGGCCACAAAGAAGGGGGAAGCGGGAGGAGGAAGG
CAAAAAGGCAAAGGTTTAGGAGGAGGAGGAGGAGGAGGGGCGTCGTTCTC
GTCGTCCTCGATGGCGCTAGCAGGAGAAGGACGAGGGGGAGGGACCCTTA
ATTCTTTTTTCCAATCACGGATTGGAGCACCAAAAGCAGCGGCAGCAGCA
GCAGCAACAACAACCTCAAAAGGAGAAACTGCGTCAAGAAAAGCAGCCGA
GTCAGAGAGGGAGGGAAGGAGGGAGGGAGGTAGCGCCATAGTCTACTGTT
GGAAGACGGCGGACTGTGACCTGCTGGCCGCCGAGCTGACCAAGAGGGGC
ATTCCCACTCTGGCATATCATGGCAAGATGAAGGACGGCCAAAGGAAAGA
GGTGCAGGGGTTGTTCTCCGAGGGGCTGGTCAAGGTGGTGACGGCGTCGT
GTGCGTTTGGCATGGGCATCGATAAGGCCGATGTCCGGCTGGTGGTGCAT
TGGACGgtaagctcgcacatgcctcccttcatcccctgcctcccactcct
tcgttttccgtttctttgtttgttgctgtctcatccgggcatccatcttg
tgcctccaactctctccctcctctctacctctgtcgataatcacctcaca
cggacattcctttctttctttctccctgtctacacacataccctttttcc
cccctctcgccctcgtccagGTCCCCAACACCCTTGAAGCTTTCTACCAA
GAAAGTGGGCGCGCTGGCCGTGACGGGAAGCCAGCTTTCTCTCTCCTCTT
TTACTCGGACCACGACCTCAGCTCTCGCCAGTACATACTTGCTAAAGGGC
TGGACGAGGGAGAGAGGGAGGGAGGCAGGGGCGAAAGCAAAGAGAAGGAG
GTGGAACGGAAGGGGGAAGAGTTGATGAAGGTCAGGGAATATGCGCTGGA
GGGGGGTGGGTGTTGGAGGAGAAAGCTTTTGGCATATTTTGGGGAGGGAG
GGAGGGATCATGGGAGGGGCTGGACGAAGGAGCGATGTTGTGGGTATTGC
GTGGATGGTGGGAAGAGGGTGAGGGAATGTTTGAAGGCGTTGATGGAGGA
AGGAGGGCCAGGAAGAAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GGGGGATGAGGACATATGTTAGTGGTGACGATGATGACGGAGGGGTGGAG
GGGGGGAGGAATGGGAAGAGGAGGGGAATGTTTGATGGCGATGGGTTCCA
AGACCGCAACGAAGACGACGAGGAGGACGAGGGAGGGAGAGAGGGAGGGC
AAAGGGAGGTGGTAGAGGCGGAGGTGGAGGCTTCAATGGCCGAGATAGGG
AGTAGCAAAATCTTTCGACAGCAAGTTCAGATTTCGCGCACTGCGGGGAA
TCTGTCAGCTGCTGACAAGGCCCGAGCTATTCTGGCAGCGCACGTGCAAG
AGGAAGAAAGACAGCAGGGAGGGACCGTCGGAGGAGAAAGGAGTGGGAGT
GTGGTGAGGAAGAAGGCATCTCCCGCTGTGCTAATTACTACGGGGAAAGG
TAAACATATCAAGCACCTAATCTCGACTAGCTCGTCCACCTCCTATTTTT
CCTCTCCTCCCGCTGCTGCTGCTGCTCCTGCGGCTGCTGCAATTGTTGCT
ACTGGCTCTACCGCCCTTTCTGCTGCTGTTGATGTCCCTGCATTAGGTTC
AAGCGTTGGCAAAAGAAGCAAAAAAGCCAAGAAGGAAGAGGAGGAGCTAG
AGGCGCTGGCTCGCTTTGAAGCTGTGGATGAGGAGGACGAGGAGTGGGGG
AAGGAGTTGCGAGTGGGGAAAGTACGGCGACGGAAAGTTATCAAAGAGAT
TTTCACGTTGTCAACGCAGGGGCTGAGGGACGGGAAGATGCTCGATCGAG
TGTTGGAGAGAATCAAGGAGGAGGAGAGGGCATGGTGGATGGGCTCCAGG
ACGAAGGAGCAGTACCAACATTACGTGAGGGAACGGATGGCAGGGTTGTA
TGATTAGCAGGGAGGGAGGAGGGAAGGAGGGTACGTCATCGAAAGGTGTG
AGTGCATGTGGTTGGTGTGGGACAACACAGGTAGAAAGACAGACGGAGGA
AAGGACCACGGACGTGGAGGGAGGAGACGGCACGAGACACGCGATGGCAC
ATGCACACATATGATTACATGCAAAGACACAATATGTCCATCCTTGAAAG
ACGATTGTGCTGGG
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protein sequence of NO10G01370.1

>NO10G01370.1-protein ID=NO10G01370.1-protein|Name=NO10G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=854bp
MAHPLEPTPPPTARATSSAMETQMLQVLRSTFGLNEFREMQMDVISHVLH
GGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARG
VKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQ
QLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTA
TATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHGVLAS
AIKSEIGPFVCQATKKGEAGGGRQKGKGLGGGGGGGASFSSSSMALAGEG
RGGGTLNSFFQSRIGAPKAAAAAAATTTSKGETASRKAAESEREGRREGG
SAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDGQRKEVQGLFSEGLV
KVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQESGRAGRDGKPAFSL
LFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEVERKGEELMKVREYA
LEGGGCWRRKLLAYFGEGGRDHGRGWTKERCCGYCVDGGKRVRECLKALM
EEGGPGRRRGGGGGGGGGGGMRTYVSGDDDDGGVEGGRNGKRRGMFDGDG
FQDRNEDDEEDEGGREGGQREVVEAEVEASMAEIGSSKIFRQQVQISRTA
GNLSAADKARAILAAHVQEEERQQGGTVGGERSGSVVRKKASPAVLITTG
KGKHIKHLISTSSSTSYFSSPPAAAAAPAAAAIVATGSTALSAAVDVPAL
GSSVGKRSKKAKKEEEELEALARFEAVDEEDEEWGKELRVGKVRRRKVIK
EIFTLSTQGLRDGKMLDRVLERIKEEERAWWMGSRTKEQYQHYVRERMAG
LYD*
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Synonyms
Publications