NO09G03600, NO09G03600 (gene) Nannochloropsis oceanica

Overview
NameNO09G03600
Unique NameNO09G03600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3515
Alignment locationchr9:1032374..1035888 +

Link to JBrowse

Properties
Property NameValue
DescriptionIntraflagellar transport protein 172 homolog
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1032374..1035888 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR001680WD40_repeat
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
Homology
BLAST of NO09G03600 vs. NCBI_GenBank
Match: OQR95512.1 (Intraflagellar Transport Protein [Thraustotheca clavata])

HSP 1 Score: 235.3 bits (599), Expect = 9.000e-58
Identity = 146/349 (41.83%), Postives = 208/349 (59.60%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ WSP+  +LAV TV R++ ++DA  G R+DKF TK A +  +                    +YVV ALAFSPDS KL+VAQSD  V++YKLG  WG KKSI +KF+  S VTSM+WP   P+E   +V+GLADG+V   +L+SNK  +L S      + SYV  +  +P+G +A++S+HYD S+  +      V+   ST   +A HTC P+ L+W ++ +VAAGND+ V  Y  + G ++  FDYSS        C EFT + V   G ++VVGNF+S Y+Y   + T+           E VG+  + +LYS T+L W  D  RLAVGS CGA+D++++ +
Sbjct:  995 KVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKGDK--------------------NYVVRALAFSPDSSKLAVAQSDNIVFIYKLGLEWGDKKSICNKFAQASSVTSMIWPVAHPNE---IVFGLADGKVKLGQLRSNKPATLYS------TGSYVATMCTNPEG-TAILSSHYDQSI--YRFIFDDVNGG-STQTKIALHTCVPYALSWGES-IVAAGNDRKVTFYDKD-GGMVRSFDYSSDD-----KCGEFTTSVVNPTGDSVVVGNFNSFYIYNYQAKTE---------SWEAVGVKAIENLYSVTSLGWKYDGSRLAVGSVCGALDLFDACV 1294          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: OQS01442.1 (intraflagellar transport protein [Achlya hypogyna])

HSP 1 Score: 227.3 bits (578), Expect = 2.500e-55
Identity = 148/349 (42.41%), Postives = 206/349 (59.03%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ WSP+  +LAV TV R++ ++DA  G R+DKF TK A +A              S A     +Y V  LAFSPDS KL+VAQSD  V++YKLG  WG KKSI +KF   S VTSM+WP   P+E   +V+GLADG+V   +L+SNK  +L S      + SYV  L  +P+G +AV+S+HYD S+  +      V+  +S ++++  H+C P+ L+W    +VAAGND+ VA Y  + G ++  FDY+S        C EFT +     G + VVGNF+S Y Y     T  AK    T   E VG+  + +LYS T+L W  D  RLAVGS CGA+D++++ +
Sbjct:   18 KVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKARSPPPRPL------SHATHGDKNYTVRGLAFSPDSSKLAVAQSDNIVFIYKLGLEWGDKKSICNKFMQASSVTSMIWPAAHPNE---IVFGLADGKVKLGQLRSNKPATLYS------TGSYVSTLCANPEG-TAVLSSHYDMSI--YRFIFDDVNGGSSQTKIVI-HSCVPYALSW-GEAIVAAGNDRKVAFYDKD-GGLVRSFDYASDD-----KCGEFTTSVFNPTGDSCVVGNFNSFYTY-----THQAK----TDSWEAVGVKTIDNLYSVTSLGWKHDGSRLAVGSVCGALDLFDACV 331          

HSP 2 Score: 109.4 bits (272), Expect = 7.500e-20
Identity = 65/174 (37.36%), Postives = 104/174 (59.77%), Query Frame = 0
Query:  427 EKGIQLLQSRNLLEAAVDHAMAVKDFAYALKVCDLSLPQRLACVHHQHARYLQQQGQYTEAEESFLFAKAPRDAIDMFLSPLLRDYSSARRLAEKHAPSLVPTILEAQADALLQRSRQGYTITEKDAAKYSQAEALYLAAGQPEQALNMYMEAQHWAEAFRIAHRHLFHRLIDV 601
            E G +LL    L E A+D+A+    F YA ++   S P+++  VH +HA +L+ + ++ EAE  F+ A  PR+A+DM++    +D+++A R+AE   P+ V  +  AQA   ++R         KD   +++AE  +L AG+PE AL  YME Q W++A R+A RHL H+L +V
Sbjct: 1117 EPGFKLLTRLGLTEPAIDYAIESGSFEYAFELARNSAPKKVPEVHLKHALFLEDEERFKEAEAEFINANKPREAVDMYVHQ--QDWANAMRVAETADPASVADVFVAQARLWVER---------KD---FARAEGFFLNAGKPEMALAAYMEGQMWSDAMRLARRHLPHKLGEV 1276          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: GAX92104.1 (intraflagellar transport protein 172, partial [Pythium insidiosum])

HSP 1 Score: 227.3 bits (578), Expect = 2.500e-55
Identity = 144/349 (41.26%), Postives = 205/349 (58.74%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVT++TWSP+  +LAV TV R++ L+DAQ G R+DKF T  A                D   K    +YVV AL FSPDS KL+VAQSD  V++YK+G  WG KKSI +KF      TS+ WP   P+E   +V+GLADG+V   +L+SNK  +L S      + SYV A+  + +G +A++S HYDGS+  +      VS   +T++ +A H+C P+ LAW ++ + AAGND+ VA Y  + G ++  FD+S+        C EFT +     G ++VVGNF+S Y +     T+           E VG+  + +L+S TALAW AD  RLAVGS CGA+D+Y++ +
Sbjct:   18 KVTSVTWSPNNKRLAVITVDRVVHLFDAQTGERKDKFSTXPA----------------DKGEK----NYVVRALVFSPDSSKLAVAQSDNIVFIYKIGLDWGDKKSICNKFPQSXSXTSLTWPSTHPNE---IVFGLADGKVKVGQLRSNKPATLYS------TGSYVSAVCSNIEG-TAILSGHYDGSI--YRFVFDDVSGGPTTTK-IAVHSCVPYALAWGES-IAAAGNDRRVAFYDRD-GGLVRAFDFSNDD-----KCGEFTTSVFNPTGDSVVVGNFNSFYTFNYHLKTE---------SWEQVGVKTIENLFSVTALAWKADGSRLAVGSVCGALDLYDACV 317          

HSP 2 Score: 108.2 bits (269), Expect = 1.700e-19
Identity = 63/174 (36.21%), Postives = 103/174 (59.20%), Query Frame = 0
Query:  427 EKGIQLLQSRNLLEAAVDHAMAVKDFAYALKVCDLSLPQRLACVHHQHARYLQQQGQYTEAEESFLFAKAPRDAIDMFLSPLLRDYSSARRLAEKHAPSLVPTILEAQADALLQRSRQGYTITEKDAAKYSQAEALYLAAGQPEQALNMYMEAQHWAEAFRIAHRHLFHRLIDV 601
            E+G +LL    L+E A+D+A+    F +A ++     P++L  VH +HA +L+ + ++ EAEE F+ A  PR+A+DM++    +D+ +A R+AE   P+ V  +  AQA   ++R             +Y +AE  +L+AG+PE AL  Y+E   W +A RIA RHL H+L++V
Sbjct: 1132 EQGAKLLTRLGLIEPAIDYAIESGAFEHAFELARNCAPKKLPEVHLKHALFLEDEERFKEAEEEFIKAGKPREALDMYIHQ--QDWQNAMRVAESADPASVSDVFIAQARLWVERK------------EYQRAEGFFLSAGKPELALAAYLEGGMWQDAVRIAKRHLPHKLLEV 1291          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: XP_012195025.1 (hypothetical protein SPRG_01418 [Saprolegnia parasitica CBS 223.65] >KDO34175.1 hypothetical protein SPRG_01418 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 226.5 bits (576), Expect = 4.200e-55
Identity = 141/349 (40.40%), Postives = 202/349 (57.88%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ WSP+  +LAV TV R++ ++DA  G R+DKF TK A +  +                    +Y V  LAFSPDS KL+VAQSD  V++YKLG  WG KKSI +KF     VTSM+WP   P+E   +V+GL+DG+V   +L+SNK  +L        + SYV  +  +P+G +A++S+HYD S+  +      V+  +S ++ +A HTC P+ LAW    +VAAGND+ VA Y+ + G ++  FDYSS        C EFT +     G ++VVGNF+S Y+Y              T   E VG+  + +LYS T+L W  D  RLAVGS CGA+D++++ +
Sbjct:   18 KVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKGDK--------------------NYTVRGLAFSPDSSKLAVAQSDNIVFIYKLGLEWGDKKSICNKFMQACSVTSMIWPTAHPNE---IVFGLSDGKVKLGQLRSNKPATL------YATGSYVSTMCTNPEG-TAILSSHYDHSI--YRFIFDDVNGGSSQTK-IAIHTCVPYALAW-GEAIVAAGNDRKVAFYNKD-GGLVRSFDYSSDD-----KCGEFTTSVFNPTGDSVVVGNFNSFYIY---------SHHVKTNSWEAVGVKTIENLYSVTSLGWKYDGSRLAVGSVCGALDLFDACV 317          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: XP_024579125.1 (intraflagellar transport protein 172 [Plasmopara halstedii] >CEG42756.1 intraflagellar transport protein 172 [Plasmopara halstedii])

HSP 1 Score: 226.5 bits (576), Expect = 4.200e-55
Identity = 145/349 (41.55%), Postives = 201/349 (57.59%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ +SP+  +LAV TV R++ L+D Q G R+DKF TK A                D   K     Y+V AL FSPDS KL+VAQSD  ++VYK+G  +G KKSI +KF   S VTS+ WP   P+E   +V+GLADG+V    L+SNK  +L        + SYV  +  +PDG +A++SAHYDG++  +      V+   + ++L+  H+C P+ L+W  + +VAAGND+ V+ Y  + G  L  FDYSS        C EFTC+     G + VVGNF+S Y +     T+           E VG   +P+LYS TALAW  D  RLAVGS CGA+D+Y++ +
Sbjct:   18 KVTAIAYSPNNRRLAVVTVDRVVHLFDGQTGERKDKFSTKPA----------------DKGDK----HYIVRALEFSPDSCKLAVAQSDNIIFVYKIGLEFGDKKSICNKFPQTSSVTSLTWPSTHPNE---IVFGLADGKVKIGHLRSNKPATL------YATGSYVSQVCSNPDG-TAILSAHYDGAI--YRFIFDDVTGGPTHAKLVV-HSCIPYALSW-GDSIVAAGNDRRVSFYDKD-GAQLRTFDYSSDD-----KCGEFTCSVFNPTGESAVVGNFNSFYTFHYKHKTE---------SWELVGAKRIPNLYSVTALAWKPDGSRLAVGSVCGALDLYDACV 317          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: XP_008612062.1 (hypothetical protein SDRG_07976 [Saprolegnia diclina VS20] >EQC34656.1 hypothetical protein SDRG_07976 [Saprolegnia diclina VS20])

HSP 1 Score: 225.3 bits (573), Expect = 9.400e-55
Identity = 141/349 (40.40%), Postives = 203/349 (58.17%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ WSP+  +LAV TV R++ ++DA  G R+DKF TK A +  +                    +Y V  LAFSPDS KL+VAQSD  V++YKLG  WG KKSI +KF     VTSM+WP   P+E   +V+GLADG+V   +L+SNK  +L        + SYV  L  +P+G +A++S+HYD S+  +      V+  +S ++ +A HTC P+ L+W ++ ++AAGND+ VA Y  + G ++  FDYSS        C EFT +     G ++VVGNF+S Y+Y              T   E VG+  + +LYS T+L W  D  RLAVGS CGA+D++++ +
Sbjct:   18 KVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKGDK--------------------NYTVRGLAFSPDSSKLAVAQSDNIVFIYKLGLEWGDKKSICNKFMQACSVTSMIWPTAHPNE---IVFGLADGKVKLGQLRSNKPATL------YATGSYVSTLCTNPEG-TAILSSHYDHSI--YRFIFDDVNGGSSQTK-IAVHTCVPYALSWGES-ILAAGNDRKVAFYDKD-GGLVRSFDYSSDD-----KCGEFTTSVFNPTGDSVVVGNFNSFYIY---------SHHVKTNSWEAVGVKSIENLYSVTSLGWKYDGSRLAVGSVCGALDLFDACV 317          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: XP_008865385.1 (hypothetical protein H310_03346 [Aphanomyces invadans] >ETW05608.1 hypothetical protein H310_03346 [Aphanomyces invadans])

HSP 1 Score: 221.5 bits (563), Expect = 1.400e-53
Identity = 142/349 (40.69%), Postives = 199/349 (57.02%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ WSP+  +LAV TV R++ ++DA  G R+DKF TK A +  +                    +YVV ALAFSPDS KL+VAQSD  V++YKLG  WG KKSI +KF   + VTSM+WP   P+E   +V+GL+DG+V   +L+SNK  +L        + SYV  L  + +G +A++S+HYD S+  +      V+   ST   +A H+C P+ L+W    +VAAGND+ V  Y  + G ++  FDY+S        C EFT +     G + VVGNF+S YV+              T   E VG+  V +LYS T+L W  D  RLAVGS CGA+D+Y++ +
Sbjct:   18 KVTAIAWSPNNRRLAVVTVERVVHMFDASTGERKDKFSTKPAEKGDK--------------------NYVVKALAFSPDSSKLAVAQSDNIVFIYKLGLEWGDKKSICNKFLQTASVTSMVWPTSHPNE---IVFGLSDGKVKLGQLRSNKPATL------YATGSYVSTLCTNVEG-TAILSSHYDQSI--YRFIFDDVNGG-STQTKIAIHSCVPYALSW-GEAIVAAGNDRKVTFYDKD-GGMVRSFDYASED-----KCGEFTTSVFNPTGDSCVVGNFNSFYVFNYL---------VKTDSWEAVGVKTVENLYSVTSLGWKFDGSRLAVGSVCGALDLYDACV 317          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: XP_009823707.1 (hypothetical protein H257_01940 [Aphanomyces astaci] >ETV86908.1 hypothetical protein H257_01940 [Aphanomyces astaci])

HSP 1 Score: 219.9 bits (559), Expect = 3.900e-53
Identity = 141/349 (40.40%), Postives = 200/349 (57.31%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ WSP+  +LAV TV R++ ++DA  G R+DKF TK A +  +                    +Y+V ALAFSPDS KL+VAQSD  V++YKLG  WG KKSI +KF   + VTSM+WP   P+E   +V+GL+DG+V   +L+SNK  +L        + SYV  L  + +G +A++S+HYD S+  +      V+  +S ++ +A H+C P+ L+W    +VAAGND+ V  Y  + G  +  FDYSS        C EFT +     G + VVGNF+S YV+              T   E VG+  V +LYS T+L W  D  RLAVGS CGA+D+Y++ +
Sbjct:   18 KVTAIAWSPNNRRLAVVTVERVVHMFDAATGERKDKFSTKPAEKGDK--------------------NYLVKALAFSPDSSKLAVAQSDNIVFIYKLGLDWGDKKSICNKFLQTASVTSMVWPTSHPNE---IVFGLSDGKVKLGQLRSNKPATL------YATGSYVSTLCTNVEG-TAILSSHYDHSI--YRFIFDDVNGGSSQTK-IAIHSCVPYALSW-GEAIVAAGNDRKVTFYDKD-GGTVRSFDYSSDDNC----CGEFTTSVFNPTGDSCVVGNFNSFYVFNYL---------VKTDSWEAVGVKTVENLYSVTSLGWKFDGSRLAVGSVCGALDLYDACV 318          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: CBN75458.1 (Intraflagellar transport protein 172 [Ectocarpus siliculosus])

HSP 1 Score: 211.5 bits (537), Expect = 1.400e-50
Identity = 145/373 (38.87%), Postives = 200/373 (53.62%), Query Frame = 0
Query:    1 MLMHHLKT-WRPCLSENLN-PSADKVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            M + HL T  +P   E  +     KV A+ W+P+  KLAV T  R++ LYD ++G +RD+F TK A +  +                    +Y+V  L FSPDS +L+VAQSD  V+VYKLG  WG  KSI +KF   SP+T M WP   P+E   +V+GLA+G+V   +LKSN+  +L +       +S+  ALA  PDG + V+SAH DG+L       +   S T     L  H   P+ L+W  + +VAAGND  V  Y  + G +   FDYSS        CREFT AA    G  +V+GN+DS +V+           S      E  G+  V ++Y+ TAL W AD  RLAVGS CG+VDVY++ +
Sbjct:    1 MQLRHLNTIIQPATGEGGDGAKMSKVMAVAWAPNNRKLAVCTADRVVALYD-ENGEKRDRFSTKPAEKGPK--------------------NYIVRDLCFSPDSTRLAVAQSDSIVFVYKLGLEWGESKSICNKFPQPSPITCMSWPEARPNE---VVFGLAEGKVKIGQLKSNRPATLYN------VDSFCAALATSPDG-NGVVSAHADGTLYRFLFDDNGAPSHTK----LVIHPSVPYALSWGLS-IVAAGNDGQVVFYDAD-GGMERTFDYSSDP-----SCREFTTAAFNPTGDAVVLGNYDSFHVF---------AHSHRAGTWEEAGVRNVENMYTVTALGWRADGSRLAVGSLCGSVDVYDACV 322          

HSP 2 Score: 94.4 bits (233), Expect = 2.500e-15
Identity = 167/687 (24.31%), Postives = 276/687 (40.17%), Query Frame = 0
Query:  427 EKGIQLLQSRNLLEAAVDHAMAVKDFAYALKVCDLSLPQRLACVHHQHARYLQQQGQYTEAEESFLFAKAPRDAIDMFLSPLLRDYSSARRLAEKHAPSLVPTILEAQADALLQRSRQGYTITEKDAAKYSQAEALYLAAGQPEQALNMYMEAQHWAEAFRIAHRHL------FHRLIDVVTIAKGERTAYSDCLT--NPITPSSSFRVEPDDILSAVGPKSMTPLRVAATFLGQRHEWAHVWSMLDY---QISKDKDKSKEGGQMQALRDDMVVLRVQQVLGDQKAHTLAVL------REALDILKAYGGPCVDHLGFYRCLAVSVLGGRSQKDELEHSVILQAL-LRDFRGV---LFDALRRSEQNNRTRKKNANNEGAKATDAVAT-DAGVAGVMITASKTKID----TLQEDDESDKDEEFMQIFLSVHYTNILSHISKLLGSDSGTNNSR------GHTKKRVPIPSERLLLELACKISLVLLRYSPTYSSLDKAFYTAGTFIRRLSQYEEAEKGKYGKLYKHLA---FLLLNRYIDLAEAIEDKMIAEEEKCGRD-GEEKMGGEVEKRCNDVQ----------IDMKGLAGCTALPQA-MTPIPRRQYVENEAEREEIKTWVLAVCKEKADGKIDQASLPSPTDAMGTLFEGLYATNLGRRGEEGRGEEARCILTGYPLQE 1067
            + G +LL  + L+E A+++A     F +AL++     P +L  +H +HA +L+ + ++ EAE  FL A  PR+AIDMF+    + ++ A R+AE H P  V  +L AQA  +              A   + AE LY+ A +PE+AL  Y EA  W +A R+  RHL       H          G   A +D L+    +  +  +    D  L A    +M      A  L +  E A   + +D     +   ++ S+    M        VLR      DQ    +AV        +A +  + +G         Y+     ++ G + ++ L+      AL +   +G    L+++  + E    T  K A        D  A+ +  V+G   +  + ++D     LQE           +   +V      + +S   G  +     R      G  K+    P+    +E   ++     +   T +    A +         +      + K GK    LA    + L RY D   +  DK   +     +D G E +   +  R  D+           +D    A  T +P      +P +Q++  E+EREE++ WVL+VC    D KIDQA LP   +A GTL+EGLYA+ L             C++TG P+ +
Sbjct: 1079 DAGAKLLNKQGLIEPAIEYATESGAFDHALELAQACCPAKLPGIHLKHALFLEDEERFKEAEMEFLQAGKPREAIDMFVHQ--KAWADACRVAEGHDPPAVSDVLCAQATDVAA------------AGDRAAAEDLYVRAAKPEKALQCYEEAGMWRDALRVCQRHLPHLAHKVHAQYQAAQAMTGTGGAKADYLSAGRALEQNRDWSAAIDAYLKATQSATMN-----AEDLEEVWERAITVARVDLPNRHMEVVREVSRRLADMGRHEAAAEVLRA----ADQPEEAVAVAVAGGAWEKARESARGHGQLAEKVESAYQ---QHLMRGEATEELLQMGQTNAALDILAQKGEWDRLWESAAKQESGVETLAKYAGLRVRSVLDDEASWEKPVSG---SDDRRELDDAVLVLQEKGAPPITSGPGRSSFAVG-----AGVSSGSGGPAADMYERLVKAVLGRDKEPSARPAAHETVERLLRVLQDQAQNLKTSNKTSPAGFEHLLMATHYTCLMGRCREKGGKDCLELASKMSITLLRYSDFIPS--DKCFYQAGSLCKDLGNENLAFVLLNRYVDLTEAIDEGNASLLDNSDFAEATNVPLVDDRTLPTKQHIPVESEREEVRDWVLSVC---MDAKIDQA-LPPEKEAGGTLYEGLYASEL-----------PSCVVTGLPVHK 1714          
BLAST of NO09G03600 vs. NCBI_GenBank
Match: POM57640.1 (Intraflagellar transport protein, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 205.3 bits (521), Expect = 1.000e-48
Identity = 134/349 (38.40%), Postives = 194/349 (55.59%), Query Frame = 0
Query:   23 KVTALTWSPDGTKLAVATVGRMIWLYDAQDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSPDSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPSEDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGASAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVVAAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAV--LGSTLVVGNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADERRLAVGSFCGAVDVYESMI 370
            KVTA+ +SP+  +LAV TV R++ L+DAQ G R+DKF TK A                D   K    +Y+V AL                 ++VYK+G  WG KKSI +KF+  S VT++ WP   P+E   +V+GLADG+V   +L+SNK  +L        + SYV  +  +P+G +A++SAHYDG++  +      V+   + ++L+  H+C P+ L+W ++ +VAAGND+ V+ Y  + GQ L  FDYS         C EFTC+     G ++VVGNFDS Y +     T+           E VG   +P+LYS TALAW  D  RLAVGS CGA+D+Y++ +
Sbjct:   18 KVTAIAFSPNNRRLAVVTVDRVVHLFDAQTGERKDKFSTKPA----------------DKGDK----NYIVRALEXXXXXXXXXXXXXXNIIFVYKIGVEWGDKKSICNKFAQPSSVTTLTWPSTHPNE---IVFGLADGKVKIGQLRSNKPATL------YATGSYVSRVCSNPEG-TAILSAHYDGAI--YRFIFDDVTGGPTHAKLVV-HSCVPYALSWGES-IVAAGNDRRVSFYDKDGGQ-LRTFDYSGDE-----KCGEFTCSVFNPTGESVVVGNFDSFYTFNFQHKTE---------SWELVGTKSIPNLYSVTALAWKNDGSRLAVGSVCGALDMYDACV 317          
The following BLAST results are available for this feature:
BLAST of NO09G03600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR95512.19.000e-5841.83Intraflagellar Transport Protein [Thraustotheca cl... [more]
OQS01442.12.500e-5542.41intraflagellar transport protein [Achlya hypogyna][more]
GAX92104.12.500e-5541.26intraflagellar transport protein 172, partial [Pyt... [more]
XP_012195025.14.200e-5540.40hypothetical protein SPRG_01418 [Saprolegnia paras... [more]
XP_024579125.14.200e-5541.55intraflagellar transport protein 172 [Plasmopara h... [more]
XP_008612062.19.400e-5540.40hypothetical protein SDRG_07976 [Saprolegnia dicli... [more]
XP_008865385.11.400e-5340.69hypothetical protein H310_03346 [Aphanomyces invad... [more]
XP_009823707.13.900e-5340.40hypothetical protein H257_01940 [Aphanomyces astac... [more]
CBN75458.11.400e-5038.87Intraflagellar transport protein 172 [Ectocarpus s... [more]
POM57640.11.000e-4838.40Intraflagellar transport protein, partial [Phytoph... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR076ncniR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010914NSK010914Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G03600.1NO09G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643275gene_10347Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G03600.1NO09G03600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G03600 ID=NO09G03600|Name=NO09G03600|organism=Nannochloropsis oceanica|type=gene|length=3515bp
ATTTTGGCCTCTATCAAAATTACCCACACCATCCACAGCATAACCGCATG
CTAATGCACCACCTCAAGACATGGCGACCGTGCCTGTCTGAGAATCTAAA
TCCCTCCGCGGACAAGGTCACAGCCCTTACCTGGTCGCCAGACGGGACCA
AATTGGCCGTGGCAACCGTGGGCCGAATGATCTGGCTCTACGATGCCCAG
GACGGCGTGCGACGAGACAAATTCCCCACCAAATCTGCCCGCCAAGCGAT
GGAAAAAGAAAGAGAAGAACAAGAAGGAAAAGGCATTGATTCAGCTGCTA
AGACGACGACCGTATCCTACGTGGTCACTGCCTTGGCTTTCTCGCCCGAC
TCGATCAAGTTGAGCGTTGCACAGAGCGATGGTGGCGTCTACGTCTACAA
GCTGGGGAGAAGCTGGGGCCATAAGAAAAGCATCTCCCACAAATTTTCCC
ACGACAGTCCCGTCACCTCTATGCTCTGGCCGCCCCATCTTCCTTCTGAG
GACGCCCAGCTTGTCTACGGACTTGCCGATGGTAGAGTTATTGCGGCTCG
TCTCAAGTCCAACAAGGCTAAATCACTGGGATCATCTCCTTCATCAAGTG
TAAGCGAGAGCTACGTCATAGCTTTGGCCCTGCATCCCGATGGTGCCAGC
GCGGTGATTTCGGCTCACTACGATGGAAGCCTATGCTGGCACCCGCTGAC
GTCTTCCTCCGTGTCCTCTTCGACCTCCACGTCGCGCCTGCTGGCGCGAC
ACACCTGTTCACCTTTTGTCTTGGCGTGGATTAAAAATGTCGTGGTAGCA
GCTGGGAATGACCAGCATGTTGCAGTGTACCATCCTGAGCTGGGCCAGGT
GCTTCATGTCTTTGATTACTCCTCTTCCTCTCCGTTTTCTTCGGTGCCCT
GCAGAGAATTTACCTGTGCCGCCGTCTTGGGCTCAACGCTTGTTGTCGGA
AATTTTGATTCCCTCTATGTGTACAAATGTGCCTCTTCAACACAAATAGC
GAAACCTTCAACGGCCACCCCCATTCTGGAGCACGTCGGCATCCACTACG
TTCCACACCTATACAGCGCTACTGCCCTCGCCTGGAGCGCAGACGAGCGT
CGATTGGCCGTTGGGTCCTTTTGCGGCGCGGTGGATGTGTATGAAAGCAT
GATAATTATGCCATCATCGCTCTCACAGCAGCAGAATGAGGTGCACCACC
AGTATCAATCATCGGCCTACCTACCTCTACCATCAATTTCGCAACCATCA
CACCTCTCGCCATCCGTCCCTCTTGTGCTCTCCCCTGAAGAGCAACTCTT
TCGAGATGCCAAATTGATGGTATTCGAGAAAGGAATCCAGCTGCTCCAGA
GTCGAAATCTACTTGAGGCTGCCGTGGACCACGCCATGGCGGTCAAGGAC
TTTGCGTACGCCCTCAAGGTGTGTGATTTGAGCTTGCCCCAAAGACTTGC
ATGCGTGCATCACCAGCATGCTCGATATTTACAGCAGCAAGGCCAGTACA
CTGAAGCGGAAGAATCGTTTCTCTTTGCCAAAGCTCCGCGCGATGCCATC
GATATGTTTCTCTCCCCACTCCTCCGTGACTACAGCAGCGCCCGACGCCT
GGCAGAAAAGCATGCACCTTCCTTGGTACCCACCATCCTCGAGGCACAAG
CGGACGCATTACTGCAGCGGTCACGACAGGGTTATACCATTACGGAGAAG
GACGCCGCTAAATACAGTCAGGCCGAGGCCCTTTATCTGGCCGCGGGACA
ACCGGAACAAGCGCTTAACATGTACATGGAGGCACAGCATTGGGCGGAGG
CTTTTCGCATCGCCCACCGCCATCTTTTCCATCGGCTGATTGATGTCGTG
ACAATTGCAAAGGGTGAGCGCACTGCATATTCCGATTGTCTGACCAACCC
TATTACCCCCTCGTCGTCGTTTCGGGTAGAGCCCGACGATATTCTCAGCG
CTGTGGGCCCCAAAAGCATGACGCCCCTTCGTGTCGCCGCCACATTCCTG
GGTCAGCGGCATGAATGGGCGCACGTATGGAGCATGCTTGATTACCAAAT
AAGCAAGGACAAGGACAAAAGCAAAGAAGGTGGGCAAATGCAAGCTCTAC
GGGACGACATGGTAGTTTTACGGGTCCAACAAGTTCTTGGAGACCAAAAG
GCGCATACCTTGGCTGTGCTACGGGAGGCATTGGATATTCTCAAAGCATA
TGGTGGACCATGTGTTGATCACCTTGGCTTCTATCGATGCTTAGCAGTGT
CGGTCTTGGGTGGACGCTCCCAAAAGGACGAACTCGAGCACTCTGTGATT
CTCCAAGCTTTGCTCCGTGATTTCCGGGGAGTTCTCTTCGACGCGCTCCG
CCGGAGCGAGCAGAACAACCGGACGAGAAAAAAGAATGCGAACAATGAAG
GAGCAAAAGCGACAGACGCAGTGGCAACAGATGCGGGGGTGGCGGGCGTA
ATGATAACGGCGTCCAAAACGAAGATTGATACTCTGCAGGAGGATGACGA
AAGTGACAAAGACGAGGAGTTCATGCAGATCTTCTTGAGCGTGCATTACA
CGAACATTCTCTCCCATATCTCTAAACTTCTCGGCAGTGATAGCGGTACC
AACAACAGCAGGGGCCATACCAAAAAACGAGTGCCCATCCCTTCCGAGCG
CTTACTCTTGGAACTTGCTTGCAAAATATCCCTCGTCCTTCTAAGATATT
CTCCAACTTATTCTTCTCTCGATAAGGCATTTTATACCGCCGGCACATTC
ATCCGCCGCTTATCTCAGTACGAAGAGGCAGAAAAGGGAAAGTATGGAAA
ACTATACAAGCACTTGGCTTTTCTCCTCTTGAATCGGTATATTGATTTAG
CAGAGGCCATAGAAGACAAAATGATCGCGGAGGAGGAGAAGTGTGGAAGG
GATGGAGAAGAGAAGATGGGGGGTGAGGTGGAGAAGCGCTGTAACGATGT
ACAGATTGATATGAAAGGCTTAGCAGGATGCACAGCCTTGCCGCAAGCAA
TGACCCCCATTCCTCGCAGGCAGTATGTAGAAAATGAAGCAGAGCGAGAA
GAGATCAAGACCTGGGTGCTGGCTGTATGTAAGGAAAAGGCGGACGGTAA
GATAGACCAAGCTTCGCTGCCGTCACCAACCGACGCCATGGGCACGCTGT
TTGAGGGATTGTACGCTACAAATCTGGGAAGGAGAGGTGAAGAGGGAAGA
GGAGAAGAAGCCAGATGTATCCTGACAGGCTACCCACTACAGGAATCGCA
GAAGCAGCAGGTAGGAGGAGGGAAGGATGGAACACGAAAAGAAAGGCACT
TTGCCAACAAAGAGGAGTGGGCTGTGTGGGTCAAGGCGTTCAAGACGTGT
CCGTGGACGGAAGAGAAAGTCTCTACCTCCACTACGACGATTAGAAGTAC
TGGTGAGCGTAAAAAACGAGACTTTCCTTTATCCCCTATCAGATGAGACA
ATTAAAGAAAATAAGAGATGGAGAAATAAAAAAATAAGGGGCAAACTTGT
AAGGCTCTATAAAAA
back to top

protein sequence of NO09G03600.1

>NO09G03600.1-protein ID=NO09G03600.1-protein|Name=NO09G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1133bp
MLMHHLKTWRPCLSENLNPSADKVTALTWSPDGTKLAVATVGRMIWLYDA
QDGVRRDKFPTKSARQAMEKEREEQEGKGIDSAAKTTTVSYVVTALAFSP
DSIKLSVAQSDGGVYVYKLGRSWGHKKSISHKFSHDSPVTSMLWPPHLPS
EDAQLVYGLADGRVIAARLKSNKAKSLGSSPSSSVSESYVIALALHPDGA
SAVISAHYDGSLCWHPLTSSSVSSSTSTSRLLARHTCSPFVLAWIKNVVV
AAGNDQHVAVYHPELGQVLHVFDYSSSSPFSSVPCREFTCAAVLGSTLVV
GNFDSLYVYKCASSTQIAKPSTATPILEHVGIHYVPHLYSATALAWSADE
RRLAVGSFCGAVDVYESMIIMPSSLSQQQNEVHHQYQSSAYLPLPSISQP
SHLSPSVPLVLSPEEQLFRDAKLMVFEKGIQLLQSRNLLEAAVDHAMAVK
DFAYALKVCDLSLPQRLACVHHQHARYLQQQGQYTEAEESFLFAKAPRDA
IDMFLSPLLRDYSSARRLAEKHAPSLVPTILEAQADALLQRSRQGYTITE
KDAAKYSQAEALYLAAGQPEQALNMYMEAQHWAEAFRIAHRHLFHRLIDV
VTIAKGERTAYSDCLTNPITPSSSFRVEPDDILSAVGPKSMTPLRVAATF
LGQRHEWAHVWSMLDYQISKDKDKSKEGGQMQALRDDMVVLRVQQVLGDQ
KAHTLAVLREALDILKAYGGPCVDHLGFYRCLAVSVLGGRSQKDELEHSV
ILQALLRDFRGVLFDALRRSEQNNRTRKKNANNEGAKATDAVATDAGVAG
VMITASKTKIDTLQEDDESDKDEEFMQIFLSVHYTNILSHISKLLGSDSG
TNNSRGHTKKRVPIPSERLLLELACKISLVLLRYSPTYSSLDKAFYTAGT
FIRRLSQYEEAEKGKYGKLYKHLAFLLLNRYIDLAEAIEDKMIAEEEKCG
RDGEEKMGGEVEKRCNDVQIDMKGLAGCTALPQAMTPIPRRQYVENEAER
EEIKTWVLAVCKEKADGKIDQASLPSPTDAMGTLFEGLYATNLGRRGEEG
RGEEARCILTGYPLQESQKQQVGGGKDGTRKERHFANKEEWAVWVKAFKT
CPWTEEKVSTSTTTIRSTGERKKRDFPLSPIR*
back to top
Synonyms
Publications