NO09G01320, NO09G01320 (gene) Nannochloropsis oceanica

Overview
NameNO09G01320
Unique NameNO09G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length833
Alignment locationchr9:436161..436993 -

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Properties
Property NameValue
DescriptionRab gtpase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:436161..436993 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001806Small_GTPase
Homology
BLAST of NO09G01320 vs. NCBI_GenBank
Match: CCA14139.1 (Rab8 family GTPase putative [Albugo laibachii Nc14])

HSP 1 Score: 326.6 bits (836), Expect = 5.400e-86
Identity = 158/203 (77.83%), Postives = 178/203 (87.68%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKKGSDAKKCC 204
            MAR ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELDGK+IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDM   +V++TEEGQ+LA+++G++F+ETSAKN++NVE  F+ IAREVKNR++ +GG         + AK     K CC
Sbjct:   18 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMMDDKVISTEEGQALADEYGVRFYETSAKNNINVEGGFIDIAREVKNRLMEEGGSHKK-ESINLSAKAIPPKKGCC 219          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: GAX26383.1 (Ras-related protein Rab-8A [Fistulifera solaris])

HSP 1 Score: 320.1 bits (819), Expect = 5.000e-84
Identity = 155/206 (75.24%), Postives = 176/206 (85.44%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKKGSDAK---KCC 204
            MA    P+DMQ+KLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+E+D  RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDMT  +VV+TEEGQ LA +FGI F+E SAKND++V+ SF+ IAR VK+R++ DGGP     +  V+ K G++A    KCC
Sbjct:    1 MASASAPYDMQVKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVEIDNTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMTDDKVVSTEEGQKLAAEFGIPFWECSAKNDIHVDDSFIGIARAVKDRLVADGGPAMNKKQQAVNLKAGANASAQGKCC 206          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: XP_002288408.1 (rab-type small G protein, partial [Thalassiosira pseudonana CCMP1335] >XP_002288891.1 rab-type small GTPase, partial [Thalassiosira pseudonana CCMP1335] >EED93844.1 rab-type small G protein, partial [Thalassiosira pseudonana CCMP1335] >EED94327.1 rab-type small GTPase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 318.2 bits (814), Expect = 1.900e-83
Identity = 151/178 (84.83%), Postives = 166/178 (93.26%), Query Frame = 0
Query:    4 QENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGG 182
            Q  P+DMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+E+DGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDM  ++VV+TEEGQ LA +FG+ FFE SAKND+NVE+SF+ IAR VK+RM+ DGG
Sbjct:    3 QAAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVEVDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGQKLAKEFGVDFFECSAKNDINVEQSFLGIARSVKDRMVKDGG 180          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: GAX24922.1 (Ras-related protein Rab-8A [Fistulifera solaris])

HSP 1 Score: 317.4 bits (812), Expect = 3.300e-83
Identity = 153/201 (76.12%), Postives = 174/201 (86.57%), Query Frame = 0
Query:    7 PFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKKGSDAK----KCC 204
            P+DMQ+KLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+E+D  RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDMT  +VV+TEEGQ LA +FGI F+E SAKND++V+ SF+ IAR VK+R++ DGGP     +  V+ K G++A     KCC
Sbjct:    8 PYDMQVKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVEIDNTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMTDDKVVSTEEGQKLAAEFGIPFWECSAKNDIHVDDSFIGIARAVKDRLVADGGPAMNKKQQAVNLKAGANANGAQGKCC 208          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: XP_002183915.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44584.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 317.0 bits (811), Expect = 4.300e-83
Identity = 154/204 (75.49%), Postives = 174/204 (85.29%), Query Frame = 0
Query:    2 ARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVD--GGPRATGGKAIVDAKKGSDAKKCC 204
            A    P+DMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN++++G RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDM  ++VV+TEEGQ LA++FGI FFE SAKND++VE SF+ IA+ VK+R+  D  GGP A  G  +   + G   KKCC
Sbjct:    4 ASNSAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVDVEGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGQKLASEFGIPFFECSAKNDIHVESSFMHIAKAVKDRLKADGQGGPSAKTGLNLKPNQSGGKDKKCC 207          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: CBJ32986.1 (Rab8A, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 315.1 bits (806), Expect = 1.600e-82
Identity = 157/206 (76.21%), Postives = 174/206 (84.47%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDG---GPRATGGKAIVDAKKGSDAKKCC 204
            M+R E+PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKILIGNKCDM   R V+ EEG  LA ++GIQFFETSAKND+NVEK F+TIAREVK+R++ DG   G RA  G   ++A+       CC
Sbjct:    1 MSRNESPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNPGSRA-AGNVNLNAQASKKKTGCC 205          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: OWZ11224.1 (Rab8 family GTPase [Phytophthora megakarya])

HSP 1 Score: 315.1 bits (806), Expect = 1.600e-82
Identity = 152/194 (78.35%), Postives = 172/194 (88.66%), Query Frame = 0
Query:   10 MQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKKGSDAKKCC 204
            MQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+ELD K++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR SF+SIRNWVGQIQQHADVHVNKILIGNKCDMT  +VV+TEEGQ+LA+++G++FFETSAKN++NVE  F+ IAREVKNR++ +GGP        ++AK     K CC
Sbjct:    1 MQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIAREVKNRLMEEGGPHKK-DNVNLNAKPAPVKKGCC 193          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: AAR13228.1 (Rab family GTPase Rab8 [Fucus distichus])

HSP 1 Score: 313.9 bits (803), Expect = 3.600e-82
Identity = 155/205 (75.61%), Postives = 173/205 (84.39%), Query Frame = 0
Query:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKKGSDAKK--CC 204
            M+R ++PFDMQIKLLMIGD+GVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKILIGNKCDM   R V+ EEG +LA ++GIQFFETSAKND+NVEK F+TIAREVK+R++ DG     G    VD    +  KK  CC
Sbjct:    1 MSRNDSPFDMQIKLLMIGDTGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSKEEGANLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGGGGHGRTVDINGQASKKKTGCC 205          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: EJK59155.1 (hypothetical protein THAOC_20656 [Thalassiosira oceanica])

HSP 1 Score: 313.5 bits (802), Expect = 4.700e-82
Identity = 150/199 (75.38%), Postives = 171/199 (85.93%), Query Frame = 0
Query:    8 FDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKK---GSDAKKCC 204
            +DMQ+KLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKN+E+DGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDM  ++VV+TEEGQ LA +FG+ F+E SAKND+NVE +F+TIAR VK+R++ DGG      K +   +      + K CC
Sbjct:    8 YDMQVKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVEVDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGQKLAKEFGVDFYECSAKNDINVEPTFLTIARAVKDRLMKDGGGAGPAKKGVQLGRNDPAAGNRKGCC 206          
BLAST of NO09G01320 vs. NCBI_GenBank
Match: EJK65905.1 (hypothetical protein THAOC_13196 [Thalassiosira oceanica])

HSP 1 Score: 313.2 bits (801), Expect = 6.100e-82
Identity = 149/202 (73.76%), Postives = 173/202 (85.64%), Query Frame = 0
Query:    5 ENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQFFETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKK---GSDAKKCC 204
            ++ +DMQ+KLLMIGDSGVGKTCLLLRYAN+SFSPTFITTIGIDFKIKN+E+DGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNW+ QIQQHADVHVNKIL+GNKCDM  ++VV+TEEGQ LA +FG+ F+E SAKND+NVE +F+TIAR VK+R++ DGG      K +   +      + K CC
Sbjct:    4 QSAYDMQVKLLMIGDSGVGKTCLLLRYANESFSPTFITTIGIDFKIKNVEVDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGQKLAKEFGVDFYECSAKNDINVEPTFLTIARAVKDRLMKDGGGAGPAKKGVQLGRNDPAAGNRKGCC 205          
The following BLAST results are available for this feature:
BLAST of NO09G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA14139.15.400e-8677.83Rab8 family GTPase putative [Albugo laibachii Nc14... [more]
GAX26383.15.000e-8475.24Ras-related protein Rab-8A [Fistulifera solaris][more]
XP_002288408.11.900e-8384.83rab-type small G protein, partial [Thalassiosira p... [more]
GAX24922.13.300e-8376.12Ras-related protein Rab-8A [Fistulifera solaris][more]
XP_002183915.14.300e-8375.49predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ32986.11.600e-8276.21Rab8A, RAB family GTPase [Ectocarpus siliculosus][more]
OWZ11224.11.600e-8278.35Rab8 family GTPase [Phytophthora megakarya][more]
AAR13228.13.600e-8275.61Rab family GTPase Rab8 [Fucus distichus][more]
EJK59155.14.700e-8275.38hypothetical protein THAOC_20656 [Thalassiosira oc... [more]
EJK65905.16.100e-8273.76hypothetical protein THAOC_13196 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010621NSK010621Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01320.1NO09G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555210gene_4422Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100059g6gene2905Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01320.1NO09G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01320 ID=NO09G01320|Name=NO09G01320|organism=Nannochloropsis oceanica|type=gene|length=833bp
ATGGCGCGGCAAGAGAATCCCTTCGATATGCAGATCAAGCTGTTGATGAT
TGGGGACTCGGGGGTGGGTAAAACGTGTCTGCTGCTGCGGTACGCCAACG
ATTCTTTCTCGCCTACTTTCATCACCACTATTGGgtgcgtacatccttag
ctagggaggattggagggagtgagggaatgaaggcttagagttttagaat
gtggaccaaatttgtcttccagttgccttcaaatatcctcattttttgtg
cgtatgagagtgaggcatgtcacctctttcagcctcgtcttggcctcctc
tctctcttctctgtctacacttacacttccacctcccttcctcactcccc
cacagCATCGACTTTAAAATTAAAAATCTTGAACTGGACGGCAAACGAAT
CAAACTCCAAATCTGGGATACGGCTGGGCAAGAACGTTTTCGAACCATCA
CCACGTCCTACTTCCGAGGGGCGCAGGGCATCCTTCTCGTCTATGATGTG
ACGGACCGTCGATCTTTCGAGTCCATCCGGAACTGGGTTGGTCAGATTCA
GCAACACGCTGATGTGCACGTGAATAAAATTTTGATCGGAAACAAGTGCG
ACATGACTCCTCAGAGGGTGGTGACGACGGAAGAAGGGCAGTCATTGGCG
AATGATTTCGGGATTCAATTTTTTGAGACGTCGGCTAAGAACGACGTCAA
TGTGGAGAAGTCTTTTGTGACGATCGCAAGGGAGGTGAAGAATAGGATGT
TGGTTGATGGAGGGCCTAGGGCGACAGGTGGAAAGGCTATTGTTGATGCT
AAGAAGGGGAGTGATGCCAAGAAGTGTTGTTAG
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protein sequence of NO09G01320.1

>NO09G01320.1-protein ID=NO09G01320.1-protein|Name=NO09G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKI
KNLELDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFE
SIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVTTEEGQSLANDFGIQF
FETSAKNDVNVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKKGSDAK
KCC*
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Synonyms
Publications