NO09G00560, NO09G00560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G00560 vs. NCBI_GenBank
Match: EWM27721.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 910.6 bits (2352), Expect = 4.300e-261 Identity = 605/979 (61.80%), Postives = 688/979 (70.28%), Query Frame = 0 Query: 1 MSRDNLPRKPQWYEATALLAAEMENWVTALDTYILFERKEELNPSCPATRNLLQVALLAAEKLGKGNRAVRIYEKATQILTLPVASKPAAALVLRACFRAAAFDLGLPFARLLLAEDKLTPIASSEIPLGQGEGETGQTPFKLDLATLNMALSTLSKSDRVQEAVACLQRTTTSWNLTPDVYTYGAVIEGLAAPEGGNLDEALALLRHMVSADQLRPNVVICSMLLQACCRAGRLQEAWELFQAIPPSERDIHRTQPLWSLATREGNITVIEGLLEELARMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCYHASLCNLARLGLCDLAERLAALVKPLGGPTPPTAMTFYALVAACEKAGEHERLLGWFQAMLQAKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGIPMGRGAYTSTIAACRESKDAELAMRVYRRMKARSNEAPSTVTRAALLDVLVAAGGPTYLAAAGEVALEQEASGETVPIHMLGNMMLASVARHRGPHEQEDLKNALAYFRPLWVARPDPAMPLPWTLCNAALRACARLGEHELAFDVLRTMRSAKVPVDVVMYGCVXXXXXXXXXXXXXXXLLKEMERDARAAEAVGMDAQDVVKPNLVCYTSVIAALQQGQEWQKALHLLVHMLSSGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVFETSVVGYIRSEDYAMESEGPGMLVDLHGYSQPVARAAVRAGLKRLSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQSCKKALSPAEKQSGTLKLRSPEQLGSSFQVFKECREEI 980 M +D LPR+PQWY +TA L+ + NW+TALDTY+LFERKEE PSC +TRNLL AL A+ +LGKGNRAVR++EKATQ + P+A+KPAA VLRACFRAAA+D+GLPFARL+L + P+ + T F LD+AT+N A+S L+K++ V EA+A ++RT+T W LTPDVYTYGAVIEGLAAP GGNLDEALAL+R+MV+ + PNVVIC++L+QACCRAGRLQEAW+LFQAIP ER +HRTQPLWSLATREG++ V+EGLLEELAR + SCYH SLCNLARLGL D AERLA L KP+ G P T MTFYALVAACEK+G HER+L WFQ ML AKV R +PMGRGAYTS IAACR++KDAELA+++Y+RMK R NEAPSTVTRAALLDVLVAAGG +L AGEVA EQEASGE VP HMLGNM+LAS+AR ++ K AL YFR LW +R DPA+PLPWTLCNAALRACARLGE +LA +VL TMR+ K PVDVVM+GCV LLK+MER A+AAE G+D D+V+PNLVCYTSVI ALQQGQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HVFE+SVVGYIRSEDY MES+GPGMLVDLHGYSQPVARAAVRAGLKRL QMY Q GKRE +IKDFVFITGVGRNSEMPFEPVLRPAMQRML EDF+PPLPCE AE+N GRL+VR+HDLV+WL+AQS K LSPAE SG LKLRS EQL +F FK+ R+E+ Sbjct: 231 MIKDGLPRRPQWYASTAQLSIHLRNWITALDTYMLFERKEEFEPSCTSTRNLLITALQASSELGKGNRAVRVFEKATQTMVPPLATKPAAVFVLRACFRAAAYDIGLPFARLILTDS----------PIRTTQNSTDFGTFVLDIATVNTAISLLAKANCVDEALAAVERTSTCWGLTPDVYTYGAVIEGLAAP-GGNLDEALALVRYMVATQSIAPNVVICNILVQACCRAGRLQEAWDLFQAIPTLERSVHRTQPLWSLATREGDVVVVEGLLEELARAR----DAQLNQQSHTKSRTLPAAKDFLSKSCYHTSLCNLARLGLSDHAERLAGLCKPVDG-KPLTPMTFYALVAACEKSGHHERVLHWFQEMLCAKVEPDPLRYGMALKACEVLGRWQSGLALMLRMRDSGQTMDPLLWKRLFLLLGREARGKEALDLVQDMESRGSKLEPICYEATVTALSRMGDKMQSVRKLMLYEEERHMPMGRGAYTSAIAACRDTKDAELALKLYQRMKGRGNEAPSTVTRAALLDVLVAAGGANFLQWAGEVASEQEASGEVVPTHMLGNMVLASIARSTDVSDEAGFKKALEYFRSLWGSRQDPALPLPWTLCNAALRACARLGESQLALEVLYTMRTTKAPVDVVMFGCVLTSCAVAGEWKEAFLLLKDMERTAKAAEMAGLDLSDIVRPNLVCYTSVITALQQGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVFESSVVGYIRSEDYEMESDGPGMLVDLHGYSQPVARAAVRAGLKRLCQMYEQTGKREGVIKDFVFITGVGRNSEMPFEPVLRPAMQRMLNEDFDPPLPCETAENNPGRLIVRAHDLVEWLSAQSRKNLLSPAE-MSGILKLRSAEQLDDTFHDFKKSRQEV 1192
BLAST of NO09G00560 vs. NCBI_GenBank
Match: EWM21396.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana]) HSP 1 Score: 89.4 bits (220), Expect = 7.100e-14 Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 0 Query: 843 VDLHGYSQPVARAAVRAGLKRLSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQ 942 +DLHG S PVA AAVR LKR+ + + + G +KD V I+GVG+ S +PF P LRPA+Q ML E + PP+ NAGR+VV L+ WL + Sbjct: 1046 LDLHGMSAPVAAAAVRYALKRIREEWWRCGPA--AVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAWLEGK 1142
BLAST of NO09G00560 vs. NCBI_GenBank
Match: XP_005853467.1 (putative udp-glucosyltransferase, partial [Nannochloropsis gaditana CCMP526] >EKU22893.1 putative udp-glucosyltransferase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 89.4 bits (220), Expect = 7.100e-14 Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 0 Query: 843 VDLHGYSQPVARAAVRAGLKRLSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQ 942 +DLHG S PVA AAVR LKR+ + + + G +KD V I+GVG+ S +PF P LRPA+Q ML E + PP+ NAGR+VV L+ WL + Sbjct: 186 LDLHGMSAPVAAAAVRYALKRIREEWWRCGPA--AVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVVGRESLLAWLEGK 282
BLAST of NO09G00560 vs. NCBI_GenBank
Match: GAX22747.1 (hypothetical protein FisN_2Lh576 [Fistulifera solaris]) HSP 1 Score: 83.2 bits (204), Expect = 5.100e-12 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 0 Query: 825 GYIRSEDYAMESEGPGMLVDLHGYSQPVARAAVRAGLKRLSQMYVQMGKRED-LIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQSCKKALSPAEKQSGTLKLRSPEQL 966 G+I + + G +++DLHG + P+A +AVR ++ + G +D + D V +TG GRNS + P+LRPA+QRML E+F PP+ N G L + S D+ WL Q +K E + KL S L Sbjct: 1037 GWIPFDLKRQDVAGGALVLDLHGMNLPMAHSAVRIAFQQ--GLLTDTGPNDDESVNDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRICSEDIRAWLQFQRQQKGARMIEVATALKKLSSGSAL 1176
BLAST of NO09G00560 vs. NCBI_GenBank
Match: CBJ28824.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 82.8 bits (203), Expect = 6.700e-12 Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0 Query: 873 KREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQSCKKALSPAEKQS-GTLKLRSPEQL 966 K +++ F ITG GR+S FEPVLRP Q ML E+FEPPLP F N GRL VR D++ W + +S K +PA G+LKLR L Sbjct: 10 KDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVRKEDILAWCSRESEKGRRAPAPADDVGSLKLRGVADL 103
BLAST of NO09G00560 vs. NCBI_GenBank
Match: GAX13066.1 (hypothetical protein FisN_2Hh576 [Fistulifera solaris]) HSP 1 Score: 82.8 bits (203), Expect = 6.700e-12 Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 0 Query: 825 GYIRSEDYAMESEGPGMLVDLHGYSQPVARAAVRAGLKR--LSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQSCKKALSPAEKQSGTLKLRSPEQL 966 G+I + +G +++DLHG + P+A +AVR ++ L+ ++ K + D V +TG GRNS + P+LRPA+QRML E+F PP+ N G L + S D+ WL Q +K E + KL S L Sbjct: 1033 GWIPFDLKRQHVDGGALVLDLHGMNLPMAHSAVRIAFQQGLLTDIWPNNDKS---VNDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRISSEDIRAWLEFQRQQKGARMIEVATALKKLSSGSAL 1172
BLAST of NO09G00560 vs. NCBI_GenBank
Match: XP_002297299.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86401.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.5 bits (197), Expect = 3.300e-11 Identity = 47/106 (44.34%), Postives = 58/106 (54.72%), Query Frame = 0 Query: 843 VDLHGYSQPVARAAVRAGLKR---LSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQSCKK 946 +DLHG S VA +AVR L++ Q + KD + ITG GR S F PV+RP +QRMLTE+F PPL N G L+V S D+ WLN Q KK Sbjct: 1274 LDLHGMSSAVAHSAVRVSLQQEIMRVQPFAPSSGVYSWEKDVIIITGRGRRSGERFRPVIRPEVQRMLTEEFFPPLGTSSIPGNMGALLVPSEDISAWLNNQRQKK 1379
BLAST of NO09G00560 vs. NCBI_GenBank
Match: XP_002291682.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90533.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.5 bits (197), Expect = 3.300e-11 Identity = 47/106 (44.34%), Postives = 58/106 (54.72%), Query Frame = 0 Query: 843 VDLHGYSQPVARAAVRAGLKR---LSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQSCKK 946 +DLHG S VA +AVR L++ Q + KD + ITG GR S F PV+RP +QRMLTE+F PPL N G L+V S D+ WLN Q KK Sbjct: 1327 LDLHGMSSAVAHSAVRVSLQQEIMRVQPFAPSSGVYSWEKDVIIITGRGRRSGERFRPVIRPEVQRMLTEEFFPPLGTSSIPGNMGALLVPSEDISAWLNNQRQKK 1432
BLAST of NO09G00560 vs. NCBI_GenBank
Match: EJK53575.1 (hypothetical protein THAOC_26959 [Thalassiosira oceanica]) HSP 1 Score: 78.6 bits (192), Expect = 1.300e-10 Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 0 Query: 836 SEGPGMLVDLHGYSQPVARAAVRAGLKRLSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLNAQ 942 S+ + +DLHG S VA A VR L++ ++ E L +D + +TG+GR S F PVLRP +QRMLTE+F PP+ N G L++ D+ WL Q Sbjct: 1201 SDSNRLYLDLHGMSAAVAHAGVRVALQK--EIATAPNDAEVLGRDVMIVTGLGRRSGERFRPVLRPEVQRMLTEEFFPPMGTSSVPGNMGALLIPKSDIEAWLEHQ 1304
BLAST of NO09G00560 vs. NCBI_GenBank
Match: CBJ28259.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 78.2 bits (191), Expect = 1.600e-10 Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0 Query: 843 VDLHGYSQPVARAAVRAGLKRLSQMYVQMGKREDLIKDFVFITGVGRNSEMPFEPVLRPAMQRMLTEDFEPPLPCEFAEHNAGRLVVRSHDLVQWLN 940 +DLHG+S P+A AAVR L + + + G + D ITG+GR S F+P++RP +QRMLT++F PPL N GR+VV + + WL+ Sbjct: 1 MDLHGHSLPLAHAAVRCALVEVWRFSQREG---TALGDLTIITGMGRGSLHAFQPIIRPEVQRMLTDEFYPPLDSATEVGNTGRVVVSAKTIEAWLD 94 The following BLAST results are available for this feature:
BLAST of NO09G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 11
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G00560 ID=NO09G00560|Name=NO09G00560|organism=Nannochloropsis oceanica|type=gene|length=3744bpback to top protein sequence of NO09G00560.1 >NO09G00560.1-protein ID=NO09G00560.1-protein|Name=NO09G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1009bpback to top Synonyms
Publications
|