NO09G00450, NO09G00450 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G00450 vs. NCBI_GenBank
Match: ABQ42601.1 (chloroplast chlorophyll a/c binding precursor protein, partial [Heterosigma akashiwo]) HSP 1 Score: 107.5 bits (267), Expect = 5.300e-20 Identity = 73/201 (36.32%), Postives = 109/201 (54.23%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPK-FSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAF--AKLDEKSEEEALAYQNK--ELNNGRLAMVSWLGAVVGASLTGGEDPVATLL 206 + L GA AF+AP ++T +MSFE+E GV PLG+WDPLGL D D ++F++ R EIKHGR++MLA+L ++T G + PG V +P GI A+ GA G Q++ F +E+ + +D D +AF K+DE+ +EA + ELNNGR A + L +V ++ + +LL Sbjct: 30 AALAGASAFVAPNQMGVAKTSSALKMSFENELGVQPPLGFWDPLGLLNDADQQRFDRLRYVEIKHGRISMLAILGHILTTAGARWPGAVDLSGKTYAEIPAGIKAL--GALPFAGVCQIVAFIGLIELGFSKCQD--------DVAAFCEGKMDEQGWDEAKKDSKRAIELNNGRAAQMGILALMVHETINNDPYVINSLL 220
BLAST of NO09G00450 vs. NCBI_GenBank
Match: BAE93609.1 (fucoxanthin chlorophyll a/c binding protein [Chrysotila carterae]) HSP 1 Score: 107.1 bits (266), Expect = 6.900e-20 Identity = 78/189 (41.27%), Postives = 106/189 (56.08%), Query Frame = 0 Query: 7 LTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-QSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE----DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVV 191 + +S + A F AP P +R RM+FE E GP G +DPLGL ADGD EKF++ R E+KHGR+ MLA+L +VT GV+LPG ++ G+P S+P GI A++ A G AQ+ F LE LA K+ + PGD + F D +EEE + + ELNNGR A + L +V Sbjct: 1 MALSLSVAALGFNAPLPAAIASRSAVRMAFEGEIN-PGPQGVYDPLGLVADGDQEKFDRLRYVELKHGRICMLAILGHVVTSAGVRLPGELSF--GLPFASVPTGIKALS--VVPAAGLAQIFAFVGFLE-LAVMKDVEGTGEFPGDFRNGFIDFG-WDNFTEEEKASKRGIELNNGRAAQMGILALMV 182
BLAST of NO09G00450 vs. NCBI_GenBank
Match: CAA87641.1 (light-harvesting chlorophyll a-c binding protein, partial [Amphidinium carterae] >prf||2111283A light-harvesting chlorophyll a/c-binding protein) HSP 1 Score: 107.1 bits (266), Expect = 6.900e-20 Identity = 65/164 (39.63%), Postives = 92/164 (56.10%), Query Frame = 0 Query: 35 SFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-QSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDV-QPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTG 197 +FE E GV P G+WDPLGL+ DG ++ F + RA+EIKHGR+AMLA + + L K PG ++ G+ + +P G+GA++ A GWAQ+L +A E Q +D+ G + F L K EE N E+ NGRLAM++ +G LTG Sbjct: 13 AFESELGVAAPTGFWDPLGLAKDGSMKAFKRRRASEIKHGRIAMLATMGYITPELTGKFPGYLSPSMGLKYEDIPNGLGAISK--VPAVGWAQILAYAFYCE----QSQDQSEGSAGEAGDFGFKVLTSKDEEGLERKLNSEIANGRLAMMAIIGMFFQDGLTG 170
BLAST of NO09G00450 vs. NCBI_GenBank
Match: XP_002184620.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >CAA38956.1 fucoxanthin chlorophyll protein 3 [Phaeodactylum tricornutum] >EEC44019.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 106.7 bits (265), Expect = 9.000e-20 Identity = 74/188 (39.36%), Postives = 106/188 (56.38%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 195 ++L+ + A APA + +RT M+FE+E G PLG++DPLGL ADGD EKF++ R EIKHGR++MLA+ LV G++LPG + +S+P G A+T+ + A G AQ++ F LE LA K+ + GD + D F D EE + + ELN GR A + L +V L Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQMGILALMVHEQL 190
BLAST of NO09G00450 vs. NCBI_GenBank
Match: XP_002184619.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44018.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19 Identity = 72/188 (38.30%), Postives = 106/188 (56.38%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 195 ++L+ + A APA + +RT M+FE+E G PLG++DPLGL ADGD EKF++ R E+KHGR++MLA++ LV G++LPG + S+P G A+++ + A G AQ++ F LE+ A K+ + PGD + D F D EE + ELN GR A + L +V L Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVELKHGRISMLAVVGYLVQENGIRLPGDIDYSGTSFASIPNGFAALSTISTA--GIAQIVAFIGFLEI-AVMKDITGGEFPGDFRNDYIDFG-WDSFDEETQFKKRAIELNQGRAAQMGILALMVHEKL 190
BLAST of NO09G00450 vs. NCBI_GenBank
Match: Q41093.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic; Flags: Precursor >CAA80676.1 FcpE [Phaeodactylum tricornutum]) HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19 Identity = 74/188 (39.36%), Postives = 106/188 (56.38%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 195 ++L+ + A APA + +RT M+FE+E G PLG++DPLGL ADGD EKF++ R EIKHGR++MLA+ LV G++LPG + +S+P G A+T+ + A G AQ++ F LE LA K+ + GD + D F D EE + + ELN GR A + L +V L Sbjct: 7 ASLLASAARFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQMGILALMVHEQL 190
BLAST of NO09G00450 vs. NCBI_GenBank
Match: AAG13005.1 (light harvesting protein lhcf4 [Saccharina latissima]) HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19 Identity = 74/201 (36.82%), Postives = 107/201 (53.23%), Query Frame = 0 Query: 4 AALLTVSTLMGAQAFMAPA-------PKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-QSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQK-EDKIPGDVQPDTSAFA-KLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 195 +A++ ++ GAQAF+AP+ +++ +MSFE E G PLG+WDPLGL AD D E+F + R E+KHGR+AMLA+ L T +LPG+++ + MP G+ A++ A G AQ+ F LE+ + E PGD + FA D SEE + + ELNNGR A + L +V L Sbjct: 3 SAVMAMACAAGAQAFVAPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHL-TQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPA--GLAQIFAFIGFLELAVMKNVEGSFPGDFTNGGNPFASSWDNMSEETQASKRAIELNNGRAAQMGILALMVHEEL 200
BLAST of NO09G00450 vs. NCBI_GenBank
Match: AAG13003.1 (light harvesting protein lhcf2 [Saccharina latissima]) HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19 Identity = 75/201 (37.31%), Postives = 106/201 (52.74%), Query Frame = 0 Query: 4 AALLTVSTLMGAQAFMAPA-------PKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-QSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQK-EDKIPGDVQPDTSAFA-KLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 195 +A++ V+ GAQAF+AP+ ++ +MSFE E G PLG+WDPLGL AD D E+F + R E+KHGR+AMLA+ L T +LPG+++ + MP G+ A++ A G AQ+ F LE+ + E PGD + FA D SEE + + ELNNGR A + L +V L Sbjct: 3 SAIMAVACAAGAQAFVAPSAFNGAALTTSAKASSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHL-TQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPA--GLAQIFGFIGFLELAVMKNVEGSFPGDFTNGGNPFASSWDSMSEETQASKRAIELNNGRAAQMGILALMVHEEL 200
BLAST of NO09G00450 vs. NCBI_GenBank
Match: Q41094.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic; Flags: Precursor >CAA80677.1 FcpF [Phaeodactylum tricornutum]) HSP 1 Score: 105.9 bits (263), Expect = 1.500e-19 Identity = 72/188 (38.30%), Postives = 105/188 (55.85%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 195 ++L+ + A APA + +RT M+FE E G PLG++DPLGL ADGD EKF++ R E+KHGR++MLA++ LV G++LPG + S+P G A+++ + A G AQ++ F LE+ A K+ + PGD + D F D EE + ELN GR A + L +V L Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFESELGAQPPLGFFDPLGLVADGDQEKFDRLRYVELKHGRISMLAVVGYLVQENGIRLPGDIDYSGTSFASIPNGFAALSTISTA--GIAQIVAFIGFLEI-AVMKDITGGEFPGDFRNDYIDFG-WDSFDEETQFKKRAIELNQGRAAQMGILALMVHEKL 190
BLAST of NO09G00450 vs. NCBI_GenBank
Match: Q08584.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic; Flags: Precursor >CAA80894.1 light harvesting protein [Phaeodactylum tricornutum]) HSP 1 Score: 105.9 bits (263), Expect = 1.500e-19 Identity = 71/188 (37.77%), Postives = 104/188 (55.32%), Query Frame = 0 Query: 10 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 195 ++L+ ++A APA + +RT M+FE+E G PLGYWDPLGL ADG+ EKF++ R EIKHGR+ MLA+ L G++LPG + +S+P G A++ A G AQ++ F E+ A K+ + GD + + F D SE++ L + ELN GR A + L +V L Sbjct: 7 ASLLASRAAFAPAQQSARTSVATNMAFENEIGAQQPLGYWDPLGLVADGNQEKFDRLRYVEIKHGRICMLAVAGYLTQEAGIRLPGDIDYSGTSFESIPNGFAALS--AVPGAGIAQIIAFIGFFEI-AVMKDITGGEFVGDFRNNYLDFG-WDTFSEDKKLQKRAIELNQGRAAQMGILALMVHEQL 190 The following BLAST results are available for this feature:
BLAST of NO09G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G00450 ID=NO09G00450|Name=NO09G00450|organism=Nannochloropsis oceanica|type=gene|length=2480bpback to top protein sequence of NO09G00450.1 >NO09G00450.1-protein ID=NO09G00450.1-protein|Name=NO09G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bpback to top Synonyms
Publications
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