NO09G00440, NO09G00440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G00440 vs. NCBI_GenBank
Match: BAE93609.1 (fucoxanthin chlorophyll a/c binding protein [Chrysotila carterae]) HSP 1 Score: 106.3 bits (264), Expect = 1.300e-19 Identity = 77/189 (40.74%), Postives = 105/189 (55.56%), Query Frame = 0 Query: 23 LTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-QSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE----DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVV 207 + +S + A F AP P +R RM+FE E GP G +DPLG ADGD EKF++ R E+KHGR+ MLA+L +VT GV+LPG ++ G+P S+P GI A++ A G AQ+ F LE LA K+ + PGD + F D +EEE + + ELNNGR A + L +V Sbjct: 1 MALSLSVAALGFNAPLPAAIASRSAVRMAFEGEIN-PGPQGVYDPLGLVADGDQEKFDRLRYVELKHGRICMLAILGHVVTSAGVRLPGELSF--GLPFASVPTGIKALS--VVPAAGLAQIFAFVGFLE-LAVMKDVEGTGEFPGDFRNGFIDFG-WDNFTEEEKASKRGIELNNGRAAQMGILALMV 182
BLAST of NO09G00440 vs. NCBI_GenBank
Match: XP_002184620.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >CAA38956.1 fucoxanthin chlorophyll protein 3 [Phaeodactylum tricornutum] >EEC44019.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19 Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 0 Query: 26 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 211 ++L+ + A APA + +RT M+FE+E G PLG++DPLG ADGD EKF++ R EIKHGR++MLA+ LV G++LPG + +S+P G A+T+ + A G AQ++ F LE LA K+ + GD + D F D EE + + ELN GR A + L +V L Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQMGILALMVHEQL 190
BLAST of NO09G00440 vs. NCBI_GenBank
Match: ACE80197.1 (chloroplast light harvesting protein lhcf5 [Saccharina japonica]) HSP 1 Score: 105.5 bits (262), Expect = 2.200e-19 Identity = 73/199 (36.68%), Postives = 103/199 (51.76%), Query Frame = 0 Query: 22 LLTVSTLMGAQAFMAPA-------PKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-QSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQK-EDKIPGDVQPDTSAFA-KLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 211 ++ V+ GAQAF+AP+ ++ +MSFE E G PLG+WDPLG AD D E+F + R E+KHGR+AMLA+ L T +LPG+++ + MP G+ A++ A G AQ+ F LE+ + E PGD + FA D SEE + + ELNNGR A + L +V L Sbjct: 5 VMAVACAAGAQAFVAPSAFNGAALTTSAKASSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHL-TQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPA--GLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDNMSEETQASKRAIELNNGRAAQMGILALMVHEEL 200
BLAST of NO09G00440 vs. NCBI_GenBank
Match: XP_002184619.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44018.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 105.5 bits (262), Expect = 2.200e-19 Identity = 71/188 (37.77%), Postives = 105/188 (55.85%), Query Frame = 0 Query: 26 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 211 ++L+ + A APA + +RT M+FE+E G PLG++DPLG ADGD EKF++ R E+KHGR++MLA++ LV G++LPG + S+P G A+++ + A G AQ++ F LE+ A K+ + PGD + D F D EE + ELN GR A + L +V L Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVELKHGRISMLAVVGYLVQENGIRLPGDIDYSGTSFASIPNGFAALSTISTA--GIAQIVAFIGFLEI-AVMKDITGGEFPGDFRNDYIDFG-WDSFDEETQFKKRAIELNQGRAAQMGILALMVHEKL 190
BLAST of NO09G00440 vs. NCBI_GenBank
Match: Q41093.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic; Flags: Precursor >CAA80676.1 FcpE [Phaeodactylum tricornutum]) HSP 1 Score: 105.5 bits (262), Expect = 2.200e-19 Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 0 Query: 26 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 211 ++L+ + A APA + +RT M+FE+E G PLG++DPLG ADGD EKF++ R EIKHGR++MLA+ LV G++LPG + +S+P G A+T+ + A G AQ++ F LE LA K+ + GD + D F D EE + + ELN GR A + L +V L Sbjct: 7 ASLLASAARFAPAQQSARTSVATNMAFENELGAQPPLGFFDPLGLVADGDQEKFDRLRYVEIKHGRISMLAVAGYLVQENGIRLPGDIDYSGTSFESIPNGFAALTTISGA--GIAQIVAFIGFLE-LAVMKDITGGEFVGDFRNDFIDFG-WDSFDEETKMQKRAIELNQGRAAQMGILALMVHEQL 190
BLAST of NO09G00440 vs. NCBI_GenBank
Match: GAX21258.1 (hypothetical protein FisN_1Lh087 [Fistulifera solaris]) HSP 1 Score: 105.5 bits (262), Expect = 2.200e-19 Identity = 69/184 (37.50%), Postives = 104/184 (56.52%), Query Frame = 0 Query: 25 VSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALE--VLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVV 207 +++L+ + A APA K + T + +FE+E GV PLG+WDPLG ADGD +F++ R EIKHGR+ MLA+ L T G++LPGL++ +P G A++ A A G Q+L F LE V+ + + PGD + + F + S+++ L + ELNNGR A + L +V Sbjct: 6 LASLLASAAAFAPAQKTASTTSL--KAFENEVGVQQPLGFWDPLGLVADGDQARFDRLRFVEIKHGRICMLAVAGYLTTEAGIRLPGLISYDGTSFADIPSGFDALS--AVPAAGITQILAFIGFLEIAVMRDRVGGEFPGDFRNNFIDFG-WNTFSDQKKLEKRAIELNNGRAAQMGILALMV 184
BLAST of NO09G00440 vs. NCBI_GenBank
Match: Q41094.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic; Flags: Precursor >CAA80677.1 FcpF [Phaeodactylum tricornutum]) HSP 1 Score: 105.1 bits (261), Expect = 2.800e-19 Identity = 71/188 (37.77%), Postives = 104/188 (55.32%), Query Frame = 0 Query: 26 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 211 ++L+ + A APA + +RT M+FE E G PLG++DPLG ADGD EKF++ R E+KHGR++MLA++ LV G++LPG + S+P G A+++ + A G AQ++ F LE+ A K+ + PGD + D F D EE + ELN GR A + L +V L Sbjct: 7 ASLLASAAAFAPAQQSARTSVATNMAFESELGAQPPLGFFDPLGLVADGDQEKFDRLRYVELKHGRISMLAVVGYLVQENGIRLPGDIDYSGTSFASIPNGFAALSTISTA--GIAQIVAFIGFLEI-AVMKDITGGEFPGDFRNDYIDFG-WDSFDEETQFKKRAIELNQGRAAQMGILALMVHEKL 190
BLAST of NO09G00440 vs. NCBI_GenBank
Match: Q08584.1 (RecName: Full=Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic; Flags: Precursor >CAA80894.1 light harvesting protein [Phaeodactylum tricornutum]) HSP 1 Score: 105.1 bits (261), Expect = 2.800e-19 Identity = 70/188 (37.23%), Postives = 103/188 (54.79%), Query Frame = 0 Query: 26 STLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKE---DKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASL 211 ++L+ ++A APA + +RT M+FE+E G PLGYWDPLG ADG+ EKF++ R EIKHGR+ MLA+ L G++LPG + +S+P G A++ A G AQ++ F E+ A K+ + GD + + F D SE++ L + ELN GR A + L +V L Sbjct: 7 ASLLASRAAFAPAQQSARTSVATNMAFENEIGAQQPLGYWDPLGLVADGNQEKFDRLRYVEIKHGRICMLAVAGYLTQEAGIRLPGDIDYSGTSFESIPNGFAALS--AVPGAGIAQIIAFIGFFEI-AVMKDITGGEFVGDFRNNYLDFG-WDTFSEDKKLQKRAIELNQGRAAQMGILALMVHEQL 190
BLAST of NO09G00440 vs. NCBI_GenBank
Match: CAA87641.1 (light-harvesting chlorophyll a-c binding protein, partial [Amphidinium carterae] >prf||2111283A light-harvesting chlorophyll a/c-binding protein) HSP 1 Score: 105.1 bits (261), Expect = 2.800e-19 Identity = 64/164 (39.02%), Postives = 91/164 (55.49%), Query Frame = 0 Query: 51 SFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIP-QSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDV-QPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTG 213 +FE E GV P G+WDPLG + DG ++ F + RA+EIKHGR+AMLA + + L K PG ++ G+ + +P G+GA++ A GWAQ+L +A E Q +D+ G + F L K EE N E+ NGRLAM++ +G LTG Sbjct: 13 AFESELGVAAPTGFWDPLGLAKDGSMKAFKRRRASEIKHGRIAMLATMGYITPELTGKFPGYLSPSMGLKYEDIPNGLGAISK--VPAVGWAQILAYAFYCE----QSQDQSEGSAGEAGDFGFKVLTSKDEEGLERKLNSEIANGRLAMMAIIGMFFQDGLTG 170
BLAST of NO09G00440 vs. NCBI_GenBank
Match: OEU14321.1 (fucoxanthin-chlorophyll a-c binding protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 104.8 bits (260), Expect = 3.700e-19 Identity = 79/201 (39.30%), Postives = 109/201 (54.23%), Query Frame = 0 Query: 23 LTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGFSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLV-AAGDGIPQSMPYGIGAVTS-GAWAAQGWAQVLLFAAALEVLAPQ----KEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDPV 218 + +++L+ + A AP + S T +A +FED G PLG++DPLG DGD EKF++ R EIKHGRV MLA L +VT G+ L G + AGD S P G A + A QG Q++ F ALE+ + K ++ GD + + F D E+ L+ + ELNNGR AM+ LG +V L GG PV Sbjct: 4 VVIASLIASAAAFAPVQQKSTTTSLA--AFEDALGAQNPLGFFDPLGLVEDGDQEKFDRLRYVEIKHGRVCMLAFLGQMVTRNGIHLSGAIDNAGDQF-DSFPDGWAAFSGPDAIPQQGLIQIIAFVGALELGVMKDIEGKGNEFVGDFRNGSIDFG-WDTFDEDTKLSKRAIELNNGRAAMMGILGLMVHEQL-GGSLPV 199 The following BLAST results are available for this feature:
BLAST of NO09G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G00440 ID=NO09G00440|Name=NO09G00440|organism=Nannochloropsis oceanica|type=gene|length=2689bpback to top protein sequence of NO09G00440.1 >NO09G00440.1-protein ID=NO09G00440.1-protein|Name=NO09G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bpback to top Synonyms
Publications
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