NO09G00120, NO09G00120 (gene) Nannochloropsis oceanica

Overview
NameNO09G00120
Unique NameNO09G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3367
Alignment locationchr9:74455..77821 +

Link to JBrowse

Properties
Property NameValue
DescriptionUv excision repair protein rad23
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:74455..77821 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006289nucleotide-excision repair
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006289nucleotide-excision repair
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0005515protein binding
GO:0003684damaged DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR036353XPC-bd_sf
IPR029071Ubiquitin-rel_dom
IPR015360XPC-bd
IPR000626Ubiquitin-like
IPR015940UBA/transl_elong_EF1B_N_euk
IPR004806Rad23
Homology
BLAST of NO09G00120 vs. NCBI_GenBank
Match: EWM27799.1 (uv excision repair protein rad23 [Nannochloropsis gaditana])

HSP 1 Score: 271.6 bits (693), Expect = 3.400e-69
Identity = 214/337 (63.50%), Postives = 245/337 (72.70%), Query Frame = 0
Query:    1 MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLLGG 338
            MV IK KT+QG++FS+DGV+L+QT+N+LKAAVEA+PP+GE  PADRLKLIHQGKEL +G +TLS+Y++ +NDL+IVML+R KP XXXXXXXXXXXXXXXXXXXXXXXXX                VEQLKEMGFPESQV AALRAA  D ++A+EFLFSGNIP+SP+              L  AVG            +  G  +   VAQ LSHPEME IRR+VRENPS MES            VR+INEDP SFWAALE          XXXXXXXXXXXXXXXXXXXXXXXXXXXXA+ RLMEMGFGREQVVEAY+L+GK+EN AVNLLLGG
Sbjct:   28 MVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKPPXXXXXXXXXXXXXXXXXXXXXXXXXH---------------VEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSA----------LESAVGVERDAERAAEEEAGAG-TNATVVAQLLSHPEMERIRRVVRENPSGMESMXXXXXXXXXXLVRIINEDPASFWAALE-------ENEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG 331          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: XP_001745356.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ89934.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 89.4 bits (220), Expect = 2.400e-14
Identity = 137/333 (41.14%), Postives = 184/333 (55.26%), Query Frame = 0
Query:    4 IKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPKP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLL 336
            +  KT++   F L  +    T+ E+KAA+E +   G+ +P D LK+I+QGK L + ++TL+S +  E D ++VM S+ KP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V +L  MGF   QV AALR A  + + A E+L +G +PA  +                PA GE             +  ++   +    S+P    +R++V+E P  + S +  +A S+PD V LINE+   F+  L     E            XXXXXXXXXXXX         AV RL ++GF R   ++AY+   KDEN A N LL
Sbjct:    3 VTIKTIKDGTFDLQ-MGDDATIGEVKAAIEQS--KGDKYPKDGLKVIYQGKVLGD-SDTLASANFQEKDFLVVMASKAKPKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDVNRLMNMGFDRPQVEAALRRAFGNPDRAAEYLTTG-MPAEEAPSMDATPDE-------PAGGEGEAVVP-------QELSEDSPLYFLASNPSFLQLRQLVQEQPHLLPSMLQQIAASNPDLVSLINENQEDFYILLNA---EDENGGAPMPGAGXXXXXXXXXXXXVQLTQEEMAAVERLSQLGFDRNLALQAYIACEKDENMAANWLL 313          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: CBJ25906.1 (UV excision repair protein RAD23B homolog [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 1.000e-12
Identity = 112/265 (42.26%), Postives = 156/265 (58.87%), Query Frame = 0
Query:    1 MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSG---NIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAAL 263
            MV +  KT++GK F ++ V+ TQTV E+K  +E        FPA +LKLIH G ++++   TL+ Y + E + ++ M++    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V QL EMGFPE QV AALRAA  + +VA+EFL +G   NI A+ +                PA              +  G  +  T+  F  HP+   ++R+V+ +P+ + S +  +    P+ +  I+E+   F A +
Sbjct:    1 MVKLTVKTIKGKKFQIE-VEQTQTVREVKGVIE---EQNAEFPAAQLKLIHSG-QILKDECTLAEYKIKEEEFLVCMVT--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRQLTEMGFPEDQVTAALRAAMGNPDVAVEFLMTGIPDNIQAAAA----------------PA----------QAAAAPTGAME--TLEDFRGHPQFNELKRLVQRDPTQLSSILQMIGRQSPNLLARIHENQGDFIALM 230          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: XP_012766530.1 (DNA repair protein Rad23, putatitve, putative [Babesia bigemina] >CDR94344.1 DNA repair protein Rad23, putatitve, putative [Babesia bigemina])

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12
Identity = 82/335 (24.48%), Postives = 126/335 (37.61%), Query Frame = 0
Query:    4 IKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM---VEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLL 336
            +K KTL   +  +D V+   TV +L  AVEAA PA    P+DR KLIH GK L           + + D +IV+ S+  P                                         +   + ++ EMGFP ++V  A+ AA  +   A+EFL +GNIP SP               L P V +           +M   +  +++    SHP  + IR+ +  +P  ++  +  +  ++P+ ++ I E    F   L   G                                    V RL  +GF R  V+EA+L   K+E  A N LL
Sbjct:    3 LKIKTLNNLEAEVD-VEADITVADLMKAVEAALPA---LPSDRQKLIHSGKVLKRELRLSDYSDIKDGDKVIVITSKQPPTVSTAPVVEQPVSPPEVQPSATAVSTEPLASASSRFVTGSELEMNISRICEMGFPRAEVEQAMAAAFNNPERAVEFLSTGNIP-SPGDFL-----------LNPGVDD-----HQPSNNAMHAASQDVSLQSIQSHPAFQQIRQALNSDPQMLQQLLENIGSTNPELLQNIVEHQDEFMNMLNSAG------------GADPLLSGDDGPAVVQLTEEDVAIVERLEGLGFPRPAVIEAFLACDKNEEMAANYLL 304          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: XP_002291659.1 (Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335] >EED91766.1 Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.4 bits (202), Expect = 2.900e-12
Identity = 126/361 (34.90%), Postives = 180/361 (49.86%), Query Frame = 0
Query:    7 KTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSR-------------PKP--------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLL 335
            KTL+G  F+++ V+  +TV E+K A++      +  PA  +KLIH GK +++  + + S ++  ND ++VM+++             P P                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +++ LK +GFPES+V   LRA+N + +VA+EFL +G  P               G+        XXXXXXXXXXX   G  D +      SHP+ +++RR+V+ NPS++++ +  +    PD ++ IN +   F   +                                       AV RL EMGF R +  +AYL   K+E  A NLL
Sbjct:    6 KTLKGGKFTVE-VEAEKTVAEVKVAIQ----TNKDLPASSMKLIHSGK-VLKDEDKIESCNIKPNDFLVVMIAKVSSWLCTIAKAATPAPTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEFPAEVIDNLKALGFPESEVRVCLRASNGNPDVAVEFLMNGIPP---------------GIGXXXXXXXXXXXXXXXXXXXXXGPLDALR-----SHPQFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMM-----NEPMISAMPQEQVQQYMNMAMQAQVLRLSEEEMAAVDRLTEMGFDRSEAAQAYLACDKNEALAANLL 335          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: OQR70238.1 (UV excision repair protein RAD23B-like [Tropilaelaps mercedesae])

HSP 1 Score: 82.0 bits (201), Expect = 3.800e-12
Identity = 107/359 (29.81%), Postives = 156/359 (43.45%), Query Frame = 0
Query:    1 MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPKP---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAAL---EGGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLL 336
            ++ +  K L  + F+++ +    TV E+KA +      G+ FPA   KLI QG+ ++     L +Y +     +++M+S+P P                     XXXXXXXXXXXXXXXXXXXXXXXXX                MV  + EMG+P  QV  ALRA+  + + A+E+L +G  P               G   + A G               GQ     ++   + P+ + +R  +RENP+ +ES I  L  ++PD +RLI ++   F   L   +G GEE                                 A+ RL  +GF    VV+AY    K+EN A N LL
Sbjct:    2 LLTVSLKCLTNELFTIE-IDDECTVKEMKAKI--YEQKGDAFPAAHQKLIAQGR-IMADDEKLKAYELHNVKFVVIMVSKPAPAPAAPPGGAQAASKVTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGESALVRGVDYESMVRNITEMGYPRDQVERALRASYNNPDRAVEYLVTGIPPEEDEPQIGVNLPATGGAGTVTAPG------------GPPGQGSEPPLSFLRTQPQFQQMRNAIRENPALLESIIQQLGSNNPDMLRLITQNQDEFMHLLNEEDGRGEE-------PLAALGEEIPGPPLRFEAHVTPADKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 337          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: XP_008879471.1 (UV excision repair protein Rad23 [Aphanomyces invadans] >ETV91834.1 UV excision repair protein Rad23 [Aphanomyces invadans])

HSP 1 Score: 77.0 bits (188), Expect = 1.200e-10
Identity = 101/278 (36.33%), Postives = 141/278 (50.72%), Query Frame = 0
Query:    7 KTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPK----------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAAL 263
            KTLQG  + ++  +L  TV  +K  VEA   A      D  KLIH GK L + +  LS Y+V END ++VM+++PK                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            V QL +MGFPE QV AAL+AA  +   A+E+L +G IP  P++               PA G               G     ++     HP+ + +RR+++ NPS++ + +  +   +P  ++LI+++   F A L
Sbjct:    6 KTLQGVSYPIE-AELEDTVLSVKGKVEAVNGAA----VDNQKLIHAGKVLKDDSK-LSEYNVKENDFLVVMVTKPKVVRKTAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGIVVGEALSETVRQLVDMGFPEDQVRAALQAAFHNPERAVEYLMNG-IPEQPAA--------PPASTTAPASG---------------GLGAPTSLEALRHHPQFDALRRMIQANPSALPTVLQQIGAQNPQLLQLIHQNQEQFVAML 253          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: CCI46099.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 113/282 (40.07%), Postives = 154/282 (54.61%), Query Frame = 0
Query:    7 KTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPK------------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSF 259
            KTLQG  FS++  +LT TV  +K  +E A    + F A + KLIH GK L + T  LS Y++ END I+VM+S+PK                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V QL +MGFPE QV + L+AA  + + A+E+L +G IP +  +               P VG                     ++ Q  +HP+  + R +VR NP+++ + +  +   +P+ +RLI+E+ + F
Sbjct:    6 KTLQGNAFSIE-AELTDTVAVVKTKIEEA----QEFQASQQKLIHAGKILKDDT-VLSEYNIRENDFIVVMVSKPKGSRPTSAVPSNTTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVRQLCDMGFPEEQVRSCLQAAFGNPDRAVEYLMNG-IPENLVNPTTAAVPSTGS----PGVG---------------------SLEQLRNHPQFASFREVVRTNPAALPALLQQIGGQNPELLRLIHENQSQF 255          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: XP_023462147.1 (UV excision repair protein Rad23, partial [Rhizopus microsporus ATCC 52813] >PHZ08439.1 UV excision repair protein Rad23, partial [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 122/382 (31.94%), Postives = 169/382 (44.24%), Query Frame = 0
Query:    4 IKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPK-------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSG------------------------NIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAA-LEGG-GEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLL 335
            I  KTLQ K F L+ V  T ++  +K  +E +    +  P  + KLI  GK ++    T+  Y++ E D ++VM+S+PK                          XXXXXXXXXXXXXXXXXXXXXXXX                 ++E +  MGF  +Q   ALRA+  + + A+E+LF+G                        N P SP +           L+L      XXXXXXXXXXX     AD   +A F + P    IR++V+ NP  ++  + ++  S+P+ +R IN DP  F  A LEG  GEE                                 A+ RL  +GF R+ V+EAY    K+E  A N L
Sbjct:    2 ITVKTLQQKQFKLE-VDSTDSILSVKEKIEQS----QGHPVAQQKLIFSGK-ILSDDKTVEEYNITEKDFLVVMVSKPKATPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAEKVTTDITGSQLESVLENMMAMGFERAQCERALRASFNNPDRAVEYLFNGIPENILNEMNAAQQPQSDEQQQDTNTPISPGTTTAPTNDANAPLNLFAXXXXXXXXXXXXXXXXXXLGAD---LASFRNTPHFHQIRQLVQTNPGLLQPLLQSIGQSNPELIRAINADPNGFLQAFLEGAEGEE-----------------GGPETATIQVTAEEREAIERLEALGFPRQVVIEAYFACDKNEELAANYL 357          
BLAST of NO09G00120 vs. NCBI_GenBank
Match: GBE60496.1 (UV excision repair Rad23 [Babesia ovata])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 81/335 (24.18%), Postives = 119/335 (35.52%), Query Frame = 0
Query:    4 IKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPK---PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSXXXXXXXXXXGLDLMPAVGEXXXXXXXXXXXSMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLL 336
            +K KTL   +  +D V+   TV +L  AVEAA P   + P+DR KLIH GK L           + E D +IV+ S+     P                                          + ++ EMGFP + V  A+ AA  +   A+EFL +GNIP S               DL+                + R      ++    SHP    +RR +  +P  ++  +  +  ++P+ ++ I E    F   L   G                                    V RL  MGF R  V+EA+L   K+E  A N LL
Sbjct:    3 LKIKTLNNLEAEVD-VEAGVTVADLMKAVEAALP---SLPSDRQKLIHSGKVLKRELRLSDYSDIKEGDKVIVITSKQPSTVPTAPAVEQPVSSTEVQPSAAAESTEPLASAASRFVTGSELEMNISRICEMGFPRADVEQAMAAAFNNPERAVEFLSTGNIPQSN--------------DLLLNSNVEDNQPSNNATHATRPDGSLQSIQ---SHPAFRQMRRALNSDPQMLQQLLENIGRTNPELLQSIVEHQDEFMNMLNSSGN------------PDPYSSSEEGPAVVHLTEEELAIVQRLEGMGFPRPAVIEAFLACDKNEEMAANYLL 304          
The following BLAST results are available for this feature:
BLAST of NO09G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27799.13.400e-6963.50uv excision repair protein rad23 [Nannochloropsis ... [more]
XP_001745356.12.400e-1441.14hypothetical protein [Monosiga brevicollis MX1] >E... [more]
CBJ25906.11.000e-1242.26UV excision repair protein RAD23B homolog [Ectocar... [more]
XP_012766530.11.300e-1224.48DNA repair protein Rad23, putatitve, putative [Bab... [more]
XP_002291659.12.900e-1234.90Rad23 like protein, partial [Thalassiosira pseudon... [more]
OQR70238.13.800e-1229.81UV excision repair protein RAD23B-like [Tropilaela... [more]
XP_008879471.11.200e-1036.33UV excision repair protein Rad23 [Aphanomyces inva... [more]
CCI46099.11.600e-1040.07unnamed protein product [Albugo candida][more]
XP_023462147.11.600e-1031.94UV excision repair protein Rad23, partial [Rhizopu... [more]
GBE60496.11.600e-1024.18UV excision repair Rad23 [Babesia ovata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL118nonsL118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008366NSK008366Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Rad23gene2754Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00120.1NO09G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G00120.2NO09G00120.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G00120.3NO09G00120.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00120.1NO09G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G00120.2NO09G00120.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G00120.3NO09G00120.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00120 ID=NO09G00120|Name=NO09G00120|organism=Nannochloropsis oceanica|type=gene|length=3367bp
CTTGACACGTAATATTTTTTTTAGCTCGCCCTTGCCCTTACCCTAAGCCC
TTTGTATCGGTTCCTCTGAACTCGTGCAACCTCCTGTATTATTTCTGTCT
CTTCCATACTTTTCTCGCCACACTTCAAGTGTGATGTGCTTCTGTACACC
CTCACTCTTCTTCCCCTACTCAAATAAATCCTATATATGTACCCTCACCC
TGTCGCTTTCCTATATCCTTCTTCTCCCCCTCTTATTTTTCCTAACTCCC
CCGATACGTGGAGTACGCATACGGGTTGATTAATAAGGGCACATGATAAT
GTTCTTCAGGCCTCTCCACCTCAAATACAATTGTCACCTCGGGGTAAAAA
GCCTTGGTGTTGCTCGCACGGAAATACGCGGCCACGTCGAAGGTGATGCG
ATACACACCCGACTGCAAGACATGGCTGGTGGGTAATAAAGTCTCCACCC
GCCCATCAGCGTTTGTGTGACCATGCCCTAGCACAACCCATTGAGAGGAA
GCGGTGTCTCCTTGTCCTGCTTTTTTTTGCTCGAGGTGCAAGGCGACGCC
TTGGGCGGGTTTGCCAAGGGTGGTGTCAAGGATGTGGGAGGTAATTGGGC
AACGCTTTTTGGGGGCAGTGCTCATAGTTGCTGTAGTACTGGTAGTAACA
GACGAAGAAGAAGGAGAAAGGTGTGCGGCGAGAGAGGCGAGGCGTGCAGT
GGCGGGCGAGGTGGATGAGGCTGACATGCACTGTTCGCCTGTGGAGGGAA
GAGATAAGACAAGGATGACAATGCGGTTAGCCGGTACATTTGAGGACGAG
GGCCAGAGCTTCACCACCACGACGTAGAAGAAAGGATGCCGTGGCAATAG
GGTTGGAAGAATGCGGCGGCGGTGAAATGTCTTGCGTGGTGGGTCGGGAG
GAGTGTCGAGATCGATACCCAAATGTCTACTTGGTGTGCGGGAGACAGGG
GAAGTCGGCTATCCACAGGAACAGAGGCAGCAATGTAAATTTCTATGCTT
GAGCTGGCACGCTGTATTAGCTCTGTATATCATCATGAGGTTGTGGGAAG
GTTATGGCGCACAGGCCGTCGTCTCTTAAGGGGGTACGTAAGGGTGCTAG
AGGTGGATCTGAAGTCGTTGGACAAGCTGTGATCACTCAAGCGGATTCCT
TCTCGAATGGTGGACAGCGCTCATAAATCCCACCACCCCCAAGTCCTAGT
CACCTTCACTACGATCACAGCGATAGGGAGCAGACGCAGAAGAAGAAGAG
AAGTTAATAATCTGATTAATGGGGCGGACGGAAGTGGGCGAAAAGTAGCC
CATTTCTAGAGTCCCCGGCATTACCACAACCCCTGCCTCCTTGTGTATCA
CGCACCCCTACCTTATGTCTCAATTTTTCCAAAACCCTTGCATGATACCG
GTCCCGTTCTTCGGTTGGGGGTGTCTGCTCGTCCGGCCCTAGTCTACTTA
AACCTCATGCCTTCCCACCCACAACAGCGCCGCACATCATGGTGCTGATC
AAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGCGTCCAACT
CACACAGACGGTACGTTGCCTGTGTTTGCTGGTCCTTCTTCCCTCCCTTT
CTCGCTCCCTCCGTCCCTAGAAGACAATGCTCTTCGGTTTATGGTAAGTA
CGGGCTCCCTTCTGCGTTTCCAGCAAAGTCTCCGACCGCTCTTCCATCTT
ATTACAAGAAATTCCGCCATTTTTTTTTCGCATTTCTTCTCTATTTTCTG
CAGCTCCATGTCAAGAATGAAGCATAGTCCGTCCTGACATATGCCCTTTT
CTGCACCCCTCTTTCTCGTTCTCCCTTCCTTCCTCCTCCTTCCTTTATTC
TCGACAGGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACCACCAGCAG
GAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACCAGGgtaagtcc
attttaatttaaagaatcatacatgtattaatttattattataattcttt
ttcgttcaatattttttcttcatatatagctacatcatgatatggaaata
tatagagttcctctctcatttcgactcaaaccacctatatgcttctctcc
ttttcttcccgcggggctagctacatgcaaagtgctcacccattctccct
tcctcccccctccctccctccctccctccctccctccctccctccctccc
tccctccctccctctctccctcccttcctctctatagGTAAAGAATTGGT
GGAAGGCACAAACACCCTTTCCTCTTACCACGTTTGCGAGAACGACCTTA
TCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCATCCCTCCC
TCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCCGCTCCTGC
TCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCCTCCCAACC
CGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCGAGTCTCAAGTGGTG
GCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTCGCAATCGAGTTCCT
CTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTCCCTCCCTT
CCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAGAGGGAGGG
AGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAAGCCGACCA
TATGACAGTGGCGCAATTTTTGAGCCACCCTGAGATGGAGAATgtgagtg
cggaggaagggagatgtttacggtgtagattacctgtgtataatgctctg
catgcatagcggacgtgggctgctgcattgtactctcgataacctcaatg
acatctctcatcttcgccctctttccctcgctcccctttctttccccact
cccccttttcccagATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATG
GAAAGTGCCATTGGCGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTT
GATTAACGAAGATCCGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCG
AGGAGGGCGAGTTCGAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGA
GGGGAGGGGGGAGGGGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGA
GCAGGCAGTGGTGCGCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTG
TGGAGGCGTATTTATTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTG
CTGTTGGGTGGGTGAGAGAATGGAAGAATTGGATGGATAGGAGAACGATA
AGACGTAGCAGAGTATGAATGGGCGAGAGCTCTGAAAGAATGAAGAATAT
GTAGGCAAAGACGATGA
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protein sequence of NO09G00120.1

>NO09G00120.1-protein ID=NO09G00120.1-protein|Name=NO09G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLI
HQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPVSSSIPPSTSSTPAPAP
APAPAPAPAPAPAPASTSIPPPNPMVEQLKEMGFPESQVVAALRAANQDL
NVAIEFLFSGNIPASPSSSSSLPSSASAGLDLMPAVGEGGRGGGEEGEES
MRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRL
INEDPTSFWAALEGGGEEGEFEEEEDEDVEGEGGEGGGVGILGELTEQDE
QAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLLGG*
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protein sequence of NO09G00120.2

>NO09G00120.2-protein ID=NO09G00120.2-protein|Name=NO09G00120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLI
HQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPVSSSIPPSTSSTPAPAP
APAPAPAPAPAPAPASTSIPPPNPMVEQLKEMGFPESQVVAALRAANQDL
NVAIEFLFSGNIPASPSSSSSLPSSASAGLDLMPAVGEGGRGGGEEGEES
MRGQADHMTVAQFLSHPEMENVSAEEGRCLRCRLPVYNALHA*
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protein sequence of NO09G00120.3

>NO09G00120.3-protein ID=NO09G00120.3-protein|Name=NO09G00120.3|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MLSRPKPVSSSIPPSTSSTPAPAPAPAPAPAPAPAPAPASTSIPPPNPMV
EQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSSSSLPSSA
SAGLDLMPAVGEGGRGGGEEGEESMRGQADHMTVAQFLSHPEMENIRRIV
RENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEGEFEEEED
EDVEGEGGEGGGVGILGELTEQDEQAVVRLMEMGFGREQVVEAYLLAGKD
ENGAVNLLLGG*
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