NO09G00110, NO09G00110 (gene) Nannochloropsis oceanica

Overview
NameNO09G00110
Unique NameNO09G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1435
Alignment locationchr9:73020..74454 +

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Properties
Property NameValue
DescriptionPhenylacetate-oxygenase subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:73020..74454 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: WP_079629463.1 (phenylacetate-CoA oxygenase/reductase subunit PaaK [Mycobacterium abscessus] >SLF31805.1 Putative phenylacetic acid degradation protein PaaE/phenylacetate-CoA oxygenase/reductase, PaaK subunit [Mycobacterium abscessus subsp. abscessus])

HSP 1 Score: 72.0 bits (175), Expect = 2.100e-9
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   56 DVVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNA 147
            +V + L+G T T+++    S+LDAA+ +  D P  C+ GVC TC A+VT G     +    +L P++ DAGF+L+CQ+YP    L V  +A
Sbjct:  278 EVTIVLDGATSTMALPRNVSVLDAAQRSRDDLPFACKGGVCGTCRAKVTGGAVD--MRRNYALEPDEIDAGFVLTCQSYPTTDSLTVDFDA 366
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: EIV28963.1 (phenylacetic acid degradation protein E,flavodoxin reductase [Mycobacterium abscessus 3A-0119-R] >EIV42304.1 phenylacetic acid degradation protein E,flavodoxin reductase [Mycobacterium abscessus 3A-0731])

HSP 1 Score: 72.0 bits (175), Expect = 2.100e-9
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:   56 DVVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNA 147
            +V + L+G T T+++    S+LDAA+ +  D P  C+ GVC TC A+VT G     +    +L P++ DAGF+L+CQ+YP    L V  +A
Sbjct:  274 EVTIVLDGATSTMALPRNVSVLDAAQRSRDDLPFACKGGVCGTCRAKVTGGAVD--MRRNYALEPDEIDAGFVLTCQSYPTTDSLTVDFDA 362
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: OLL96800.1 (Phenylacetate-CoA oxygenase/reductase, PaaK subunit [Pseudonocardia sp. Ae331_Ps2] >OLM05489.1 Phenylacetate-CoA oxygenase/reductase, PaaK subunit [Pseudonocardia sp. Ae406_Ps2] >OLM15563.1 Phenylacetate-CoA oxygenase/reductase, PaaK subunit [Pseudonocardia sp. Ae505_Ps2] >OLM27060.1 Phenylacetate-CoA oxygenase/reductase, PaaK subunit [Pseudonocardia sp. Ae706_Ps2])

HSP 1 Score: 70.9 bits (172), Expect = 4.600e-9
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 0 
Query:   39 IDVPPDLEGKLDPKRHWD---VVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYP 136
            +D PP    + +P+   D   V + LNG + T++V  G  +LDAA++  GD P  C+ GVC TC A+VT G     +    +L PE+  AGF+L+CQ+ P
Sbjct:  293 VDEPPPEVDRHEPEPDGDGAQVTVVLNGRSTTLAVPAGAYVLDAAQQVRGDLPFACKGGVCGTCRAKVTDG--EVTMRRNYALEPEEVAAGFVLTCQSRP 390
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: WP_083695149.1 (MULTISPECIES: phenylacetate-CoA oxygenase/reductase subunit PaaK [Pseudonocardia] >OLM32828.1 Phenylacetate-CoA oxygenase/reductase, PaaK subunit [Pseudonocardia sp. Ae717_Ps2])

HSP 1 Score: 70.9 bits (172), Expect = 4.600e-9
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 0 
Query:   39 IDVPPDLEGKLDPKRHWD---VVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYP 136
            +D PP    + +P+   D   V + LNG + T++V  G  +LDAA++  GD P  C+ GVC TC A+VT G     +    +L PE+  AGF+L+CQ+ P
Sbjct:  281 VDEPPPEVDRHEPEPDGDGAQVTVVLNGRSTTLAVPAGAYVLDAAQQVRGDLPFACKGGVCGTCRAKVTDG--EVTMRRNYALEPEEVAAGFVLTCQSRP 378
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: WP_091119558.1 (phenylacetate-CoA oxygenase/reductase subunit PaaK [Nocardioides terrae] >SFB76785.1 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE [Nocardioides terrae])

HSP 1 Score: 70.1 bits (170), Expect = 7.900e-9
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 0 
Query:   39 IDVPPDLEGKLD---PKRHWDVVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNA 147
            +D PP    +LD        DV + L+G + T ++    S+LDAA+ +  D P  C+ GVC TC A+VT G     +    +L P + DAGF+L+CQ+YP G  + V  +A
Sbjct:  254 VDEPPPELKRLDRVYDGATTDVTIVLDGLSATAALPRDQSILDAAQASRSDLPFACKGGVCGTCRAKVTDGVVD--MRRNYALEPAEVDAGFVLTCQSYPVGDCVTVDFDA 362
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: WP_090418043.1 (phenylacetate-CoA oxygenase/reductase subunit PaaK [Mycobacterium europaeum] >CQD02886.1 putative phenylacetic acid degradation protein PaaE/phenylacetate-CoA oxygenase/reductase, PaaK subunit [Mycobacterium europaeum])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0 
Query:   57 VVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNA 147
            V + L+G T T+++   +S+LDAA+ +  D P  C+ GVC TC A+VT G     +    +L P + +AGF+L+CQ+YP    L V  +A
Sbjct:  279 VTLVLDGATTTLALPRDSSILDAAQRSRSDLPFACKGGVCGTCRAQVTGGAVD--MRRNYALDPAEVEAGFVLTCQSYPSTDALTVDFDA 366
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: WP_072690952.1 (phenylacetate-CoA oxygenase/reductase subunit PaaK [Rhodococcus marinonascens])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0 
Query:   40 DVPPDLEGKLDP---KRHWDVVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNA 147
            D+PP +E   +P       +V + L+G + T  +    S+LDA+E+   D P  C+ GVC TC A++T+G     +    +L   + D+GF+L+CQTYP    + V  +A
Sbjct:  258 DIPPPMETHREPGVTGPSSEVTLILDGRSTTAPLPRDMSILDASEKYRSDVPFACKGGVCGTCRAKITRGDVD--MRRNYALEDYEVDSGFVLTCQTYPVSDNVTVDFDA 365
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: WP_085243247.1 (phenylacetate-CoA oxygenase/reductase subunit PaaK [Mycobacterium europaeum] >ORV48644.1 phenylacetic acid degradation protein [Mycobacterium europaeum])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0 
Query:   57 VVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNA 147
            V + L+G T T+++   +S+LDAA+ +  D P  C+ GVC TC A+VT G     +    +L P + +AGF+L+CQ+YP    L V  +A
Sbjct:  279 VTLVLDGATTTLALPRDSSILDAAQRSRSDLPFACKGGVCGTCRAQVTGGAVD--MRRNYALDPAEVEAGFVLTCQSYPSTDALTVDFDA 366
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: WP_030435212.1 (phenylacetate-CoA oxygenase/reductase subunit PaaK [Actinoplanes subtropicus])

HSP 1 Score: 69.3 bits (168), Expect = 1.300e-8
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0 
Query:   56 DVVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEV 143
            +V + L+G   TV+V+EG ++L+ A+    D P  C+ GVC TC A VT+G     +    +L P +  AGF+L+CQ+ P  P LEV
Sbjct:  264 EVTVVLDGRASTVTVAEGDTVLEGAQRVRPDLPFACKGGVCGTCRARVTEG--EVTMRRNFALEPAELAAGFVLTCQSLPASPKLEV 348
[Close]
BLAST of NO09G00110 vs. NCBI_GenBank
Match: XP_005538458.1 (similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM82422.1 similar to ferredoxin [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-8
Identity = 50/151 (33.11%), Postives = 74/151 (49.01%), Query Frame = 0 
Query:   19 IPSVPSARARTCLNVGSNA--KIDVPPDLEGKLDPKRHWDVVMTLNGETKTVSVSEGTSLLDAAEEA--FGDPPCMCRNGVCTTCAAEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYP---CGPGLEVRLNAQEEVYESQYAKYEKKA 163
            +P  P+  A   L V   A  K+     L  K       ++ +     T+ V    G S+L+A E +  + + P  CR GVCTTCAA +  G      AA+++     R  GFIL+C + P    GP + +RL A ++VYE QY ++EK A
Sbjct:   44 LPRRPACWAHKQLGVRRAALRKLRATASLNEKAGADGAIEITVEYQDRTEVVRCQPGQSILEAVEASGLWTEVPSSCRAGVCTTCAAWLLSGDVEDPFAALDA---NIRKEGFILTCSSTPKADAGP-VRIRLGAYDQVYEMQYGRFEKAA 190
The following BLAST results are available for this feature:
BLAST of NO09G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_079629463.12.100e-939.56phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]
EIV28963.12.100e-939.56phenylacetic acid degradation protein E,flavodoxin... [more]
OLL96800.14.600e-939.00Phenylacetate-CoA oxygenase/reductase, PaaK subuni... [more]
WP_083695149.14.600e-939.00MULTISPECIES: phenylacetate-CoA oxygenase/reductas... [more]
WP_091119558.17.900e-936.94phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]
WP_090418043.11.000e-838.89phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]
WP_072690952.11.000e-833.64phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]
WP_085243247.11.000e-838.89phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]
WP_030435212.11.300e-840.23phenylacetate-CoA oxygenase/reductase subunit PaaK... [more]
XP_005538458.11.800e-833.11similar to ferredoxin [Cyanidioschyzon merolae str... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL118nonsL118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008370NSK008370Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00110.1NO09G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589542gene_4550Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100149g9gene2752Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00110.1NO09G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00110 ID=NO09G00110|Name=NO09G00110|organism=Nannochloropsis oceanica|type=gene|length=1435bp
GTTGAGCTCGATCGCTTCAACTGCAGCCAAGATTTGACTACCACCATATG
TTCCCCGCTCTTCTCTCCTCGCTCCCTCCTGTCCTTGCTATTTAGGTGCG
TGTATAAATCACACGTTTTCCCATTTTTTCGTCTACCTGGTGAGGTTTAT
GTGGAGTGCCTTTGGCCATCACCTCCTTCTATGGTTGGATGGACCTCCCG
GTCCAACCCCGCCCATGTTGGAAGCAGCGCAGCATGTGGTTGCCTTGCTT
GAAGGGACATACAACTCTTTCACATGATTTTGTGATATTGTGTGTCCATT
TCTCACTGTTTTGTCCCTTGTCGATGGAAACAGCCGCAGAACCAATAACA
GCACGATAACCGCAAGGACTAATCTTTCCCCTCTCCACTGCCCTGCCCTA
CCGCCCTGTGCAGGTGAGCAAACACACAATGCGCTGCCTTGGTACCCTCC
TTCTGCTGCCCGCCCTGGCCAGCGCTTTCCTAATTCCCAGTGTTCCCTCT
GCTCGCGCCCGCACCTGCCTCAACGTTGGCTCCAATGCGAAGATCGATGT
GCCCCCTGACCTGGAGGGGAAGCTTGATCCCAAGCGgtgcgtcgtcgtct
tgtgccccccccgccctactctagatatcatacccttcctccctctcgtt
gatcatgcattgagattcgttgatcgctggcgaagcgaccttgccacccg
tccactcactcgccttccaaccaccatcctctctccagTCACTGGGACGT
AGTCATGACGTTGAATGGCGAGACCAAGACCGTCTCTGTCAGTGAAGGCA
CATCCCTTTTGGATGCAGCAGAAGAAGCTTTCGGGGACCCTCCTTGTATG
TGCCGTAACGGTGTCTGCACCACGTGTGCCGCGGAAGTGACCAAGGGCGG
GCATGGCTCATGGGTGGCTGCCATCGAGTCTCTCTCGCCCGAGCAGCGTG
ATGCCGGTTTCATCCTTTCGTGCCAAACGTACCCGTGTGGACCCGGCTTG
GAAGTGCGATTGAATGCCCAGGAGGAGGTGTATGAAAGTCAGTACGCCAA
ATACGAGAAGAAGGCGCACAGTGAGTTGGAGAAGAAGAAGGGGTTCAACA
TTTTCGCATAAAGGAAAGGAAAATGATGTCCCCTGGCCCTAGCGCACTTA
AACACCAGCTGTCATGAGCGTAACAAAGACGAATGAGAGGAAGAGAAGAT
GAGGGGGGGAATTGAGTGTAGGAAAGAATGAGGAATGTGTGCATGCTTGG
ACAGATGGTGAAGAAAGACGAGGAATGAAGTGAGGAAGGGAGGGAGGAAG
GGATGGAGGGAGAACGAAGGTGAAGAAGGGACGATGATCCAGAGCCACAC
CCCAAAAAGAGGCCACTATGATCACGCGATACTATGACCACGCGATAGTC
AAAACCAAAGAAAATAACACATAACACAGAAGAAA
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protein sequence of NO09G00110.1

>NO09G00110.1-protein ID=NO09G00110.1-protein|Name=NO09G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MRCLGTLLLLPALASAFLIPSVPSARARTCLNVGSNAKIDVPPDLEGKLD
PKRHWDVVMTLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCA
AEVTKGGHGSWVAAIESLSPEQRDAGFILSCQTYPCGPGLEVRLNAQEEV
YESQYAKYEKKAHSELEKKKGFNIFA*
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Synonyms
Publications