NO08G03900, NO08G03900 (gene) Nannochloropsis oceanica

Overview
NameNO08G03900
Unique NameNO08G03900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1295
Alignment locationchr8:1097095..1098389 -

Link to JBrowse

Properties
Property NameValue
Description50S ribosomal protein L23
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1097095..1098389 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom
IPR013025Ribosomal_L25/23
Homology
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_024386517.1 (uncharacterized protein LOC112287596 [Physcomitrella patens] >PNR62185.1 hypothetical protein PHYPA_000609 [Physcomitrella patens])

HSP 1 Score: 66.2 bits (160), Expect = 6.500e-8
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    5 VNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEV 92
            V+F +  + L+   ++    +  F+  P+ +K+EI+  L  +YGL V KV T NM G++KR  G+  L  Y+RPD+KKAYVTL E V
Sbjct:   11 VHFANLPLKLLLPNSRENITEVAFKTIPSASKIEIKRVLETLYGLQVAKVNTLNMEGKKKRAKGS--LAFYRRPDYKKAYVTLKEPV 95          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002903162.1 (ribosomal protein L23, putative [Phytophthora infestans T30-4] >EEY55586.1 ribosomal protein L23, putative [Phytophthora infestans T30-4])

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-7
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTL 88
            R+ FP+  +  +   A T+ +  Q VFRV P   K EI+EYLTK+Y L V KV T N  G+ KR F  R +  YK  D+KKA VTL
Sbjct:    5 RIKFPNMAVTFMGKNARTRLRDNQYVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTL 88          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_004346712.2 (hypothetical protein CAOG_05027 [Capsaspora owczarzaki ATCC 30864] >KJE94381.1 hypothetical protein CAOG_005027 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 63.9 bits (154), Expect = 3.200e-7
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0
Query:    4 RVNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE 91
            +V  P+++M +++        QAVF V   M K +IR YL  IYGL V  V T N+ G   RI G  R LR+ +  +KKAYVTLG E
Sbjct:   23 KVFLPNWYMKVVKPGIPVARNQAVFHVPKEMTKFDIRNYLASIYGLDVLAVNTVNVMGSLSRIHG--RWLRFNK-GYKKAYVTLGSE 106          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002903246.1 (ribosomal protein L23, putative [Phytophthora infestans T30-4] >EEY55670.1 ribosomal protein L23, putative [Phytophthora infestans T30-4])

HSP 1 Score: 63.9 bits (154), Expect = 3.200e-7
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 0
Query:    4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTL 88
            R+ FP+  +  +   A T+ +  Q VFRV P   K EI+EYLTK+Y L V KV T N  G+ KR F  R +  YK  D+KK  VTL
Sbjct:    5 RIKFPNMAVTFMGKNARTRLRDNQYVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKTIVTL 88          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: CCA24512.1 (ribosomal protein L23 putative [Albugo laibachii Nc14])

HSP 1 Score: 63.5 bits (153), Expect = 4.200e-7
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    4 RVNFPSFFMALIRAPTQAQPY--QAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEA 94
            R+ FP+  +  +    + + +  Q VFR  P   K +I+EYLTK+Y L V KV T N  G+ KR FG R++  YK  D+KKA VT+ E   A
Sbjct:   11 RLRFPNMAITFMGKNPRNKSHLNQYVFRTEPNYTKHDIKEYLTKVYNLPVVKVATMNYEGKFKRAFGGRQV--YKEKDWKKAIVTIKESKTA 100          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_006004563.1 (PREDICTED: 39S ribosomal protein L23, mitochondrial isoform X1 [Latimeria chalumnae])

HSP 1 Score: 63.2 bits (152), Expect = 5.500e-7
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0
Query:    4 RVNFPSFFMALIRAPTQAQPYQAV-FRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE 91
            R+  P+FF+ L+R P   QP   V FRVS  M K +++ YL KIYG+ V  V T    G  K+     +  R KRPD+K AYV LGEE
Sbjct:   46 RIFRPNFFLTLVR-PGMEQPADVVQFRVSMEMTKFDVKNYLEKIYGVPVAAVRTRIQYGTNKKKNHLNQ--RVKRPDYKVAYVQLGEE 130          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_006004564.1 (PREDICTED: 39S ribosomal protein L23, mitochondrial isoform X2 [Latimeria chalumnae])

HSP 1 Score: 63.2 bits (152), Expect = 5.500e-7
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0
Query:    4 RVNFPSFFMALIRAPTQAQPYQAV-FRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE 91
            R+  P+FF+ L+R P   QP   V FRVS  M K +++ YL KIYG+ V  V T    G  K+     +  R KRPD+K AYV LGEE
Sbjct:   18 RIFRPNFFLTLVR-PGMEQPADVVQFRVSMEMTKFDVKNYLEKIYGVPVAAVRTRIQYGTNKKKNHLNQ--RVKRPDYKVAYVQLGEE 102          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: ADE76478.1 (unknown [Picea sitchensis])

HSP 1 Score: 62.4 bits (150), Expect = 9.400e-7
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0
Query:    5 VNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEV 92
            V+F +  + L+   ++    +  F+  P+ +K+EI+  L  +YGL V KV T NM G++KR  G    + Y +PD+KKAYVTL   V
Sbjct:   10 VHFANLPLKLVMPSSRENIKEVAFKTVPSASKIEIKRVLESLYGLEVEKVQTLNMQGKKKRRGG----IVYAKPDYKKAYVTLKHPV 92          
The following BLAST results are available for this feature:
BLAST of NO08G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
XP_024386517.16.500e-841.38uncharacterized protein LOC112287596 [Physcomitrel... [more]
XP_002903162.11.100e-746.51ribosomal protein L23, putative [Phytophthora infe... [more]
XP_004346712.23.200e-743.68hypothetical protein CAOG_05027 [Capsaspora owczar... [more]
XP_002903246.13.200e-745.35ribosomal protein L23, putative [Phytophthora infe... [more]
CCA24512.14.200e-741.30ribosomal protein L23 putative [Albugo laibachii N... [more]
XP_006004563.15.500e-745.45PREDICTED: 39S ribosomal protein L23, mitochondria... [more]
XP_006004564.15.500e-745.45PREDICTED: 39S ribosomal protein L23, mitochondria... [more]
ADE76478.19.400e-737.93unknown [Picea sitchensis][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008609NSK008609Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03900.1NO08G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583201gene_3727Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03900.1NO08G03900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03900 ID=NO08G03900|Name=NO08G03900|organism=Nannochloropsis oceanica|type=gene|length=1295bp
TTCGTGGTGGCGCGACCATGCTGTAGTTGTATGTACGGTGCGTGGCACGG
GTTGACAAGTGAGGCAGGAGGCCGCCACAACGAAAGAACATAGGCGGTTG
TCCGTTGTTGATGACGCTTTGGAGATCGTTGATGCTGGCGCGCCTGTTGG
TGAGCCTAGGAGATGTACATGTCCCCAAACTCACGACATTCCCCTCTGTA
AATCTACAGATCGGTAGGGGACGCAAAGAGTAGCGGGGACTGGTTGCGCC
GCAAAAGAGGAAGGGGACAGAGACAGGAAAGGAAGAGCAAAGCAAGTACT
CTTTGAGACGAGGCGCGCACTCAAGCGGCTAGATTACTTGTCCAAGGATC
CACACCACTACCACAAAGgtatgtagtcgaccaccaataccgtcaaaata
atcggatggggttgcttgtgtaaggcggcaaggacggagctcgtgggact
gccgcagccttagggtaaggatgcaagacacatggagagccaagatagcg
tcgtgaacatcaccaacagaccctctctccctgcaaccgccttcacggca
acatatgcaaatgggtagccgtgttgaatcgcagacatgtatgaccggcc
actcatttcctccttccccttaattcttttatcagATGCCGTTTCGCGTC
AACTTTCCCTCCTTCTTCATGGCCCTTATCCGAGCTCCCACTCAAGCTCA
GCCGTACCAAGCCGTCTTCCGCGTGTCCCCAGCCATGAACAAATTAGAGA
TCCGGGAATACTTGACAAAAATTTATGGGTTGTCAGTGCGCAAGGTCATG
ACGGCAAATATGGCAGGGAGAAGAAAAAGgtgcgtttgtgtgtgtgtgct
gccatgaggtacaacgtctctcattcctttcatccaacgcggtgcagaag
tctctctggctcgcatgctaccctttcccatactccttcttcctccatcc
tgtgaccctccgaaccccatttactccacccatcggctctctctcttcct
ccctctctctctccctcccttcctcctcctccttttcctcctcctctcca
gGATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGATTTTAAG
AAGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGGAGGAGG
GGCGGTATGAGGGAAGGAAGGAGGGAGGGAAGAGAGGATAAGACAAACGG
AAAGAATGAAGAGGAAAAACGCATGTACGCAATGTTTTTTTTTTCTGAAT
GCGAGGATACACATACATACATACATACATACATACATACATACA
back to top

protein sequence of NO08G03900.1

>NO08G03900.1-protein ID=NO08G03900.1-protein|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPFRVNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLS
VRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGAV
*
back to top
Synonyms
Publications