NO08G03900, NO08G03900 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_024386517.1 (uncharacterized protein LOC112287596 [Physcomitrella patens] >PNR62185.1 hypothetical protein PHYPA_000609 [Physcomitrella patens]) HSP 1 Score: 66.2 bits (160), Expect = 6.500e-8 Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0 Query: 5 VNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEV 92 V+F + + L+ ++ + F+ P+ +K+EI+ L +YGL V KV T NM G++KR G+ L Y+RPD+KKAYVTL E V Sbjct: 11 VHFANLPLKLLLPNSRENITEVAFKTIPSASKIEIKRVLETLYGLQVAKVNTLNMEGKKKRAKGS--LAFYRRPDYKKAYVTLKEPV 95
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002903162.1 (ribosomal protein L23, putative [Phytophthora infestans T30-4] >EEY55586.1 ribosomal protein L23, putative [Phytophthora infestans T30-4]) HSP 1 Score: 65.5 bits (158), Expect = 1.100e-7 Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 0 Query: 4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTL 88 R+ FP+ + + A T+ + Q VFRV P K EI+EYLTK+Y L V KV T N G+ KR F R + YK D+KKA VTL Sbjct: 5 RIKFPNMAVTFMGKNARTRLRDNQYVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTL 88
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_004346712.2 (hypothetical protein CAOG_05027 [Capsaspora owczarzaki ATCC 30864] >KJE94381.1 hypothetical protein CAOG_005027 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 63.9 bits (154), Expect = 3.200e-7 Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0 Query: 4 RVNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE 91 +V P+++M +++ QAVF V M K +IR YL IYGL V V T N+ G RI G R LR+ + +KKAYVTLG E Sbjct: 23 KVFLPNWYMKVVKPGIPVARNQAVFHVPKEMTKFDIRNYLASIYGLDVLAVNTVNVMGSLSRIHG--RWLRFNK-GYKKAYVTLGSE 106
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002903246.1 (ribosomal protein L23, putative [Phytophthora infestans T30-4] >EEY55670.1 ribosomal protein L23, putative [Phytophthora infestans T30-4]) HSP 1 Score: 63.9 bits (154), Expect = 3.200e-7 Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 0 Query: 4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTL 88 R+ FP+ + + A T+ + Q VFRV P K EI+EYLTK+Y L V KV T N G+ KR F R + YK D+KK VTL Sbjct: 5 RIKFPNMAVTFMGKNARTRLRDNQYVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKTIVTL 88
BLAST of NO08G03900 vs. NCBI_GenBank
Match: CCA24512.1 (ribosomal protein L23 putative [Albugo laibachii Nc14]) HSP 1 Score: 63.5 bits (153), Expect = 4.200e-7 Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0 Query: 4 RVNFPSFFMALIRAPTQAQPY--QAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEA 94 R+ FP+ + + + + + Q VFR P K +I+EYLTK+Y L V KV T N G+ KR FG R++ YK D+KKA VT+ E A Sbjct: 11 RLRFPNMAITFMGKNPRNKSHLNQYVFRTEPNYTKHDIKEYLTKVYNLPVVKVATMNYEGKFKRAFGGRQV--YKEKDWKKAIVTIKESKTA 100
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_006004563.1 (PREDICTED: 39S ribosomal protein L23, mitochondrial isoform X1 [Latimeria chalumnae]) HSP 1 Score: 63.2 bits (152), Expect = 5.500e-7 Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0 Query: 4 RVNFPSFFMALIRAPTQAQPYQAV-FRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE 91 R+ P+FF+ L+R P QP V FRVS M K +++ YL KIYG+ V V T G K+ + R KRPD+K AYV LGEE Sbjct: 46 RIFRPNFFLTLVR-PGMEQPADVVQFRVSMEMTKFDVKNYLEKIYGVPVAAVRTRIQYGTNKKKNHLNQ--RVKRPDYKVAYVQLGEE 130
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_006004564.1 (PREDICTED: 39S ribosomal protein L23, mitochondrial isoform X2 [Latimeria chalumnae]) HSP 1 Score: 63.2 bits (152), Expect = 5.500e-7 Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0 Query: 4 RVNFPSFFMALIRAPTQAQPYQAV-FRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE 91 R+ P+FF+ L+R P QP V FRVS M K +++ YL KIYG+ V V T G K+ + R KRPD+K AYV LGEE Sbjct: 18 RIFRPNFFLTLVR-PGMEQPADVVQFRVSMEMTKFDVKNYLEKIYGVPVAAVRTRIQYGTNKKKNHLNQ--RVKRPDYKVAYVQLGEE 102
BLAST of NO08G03900 vs. NCBI_GenBank
Match: ADE76478.1 (unknown [Picea sitchensis]) HSP 1 Score: 62.4 bits (150), Expect = 9.400e-7 Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0 Query: 5 VNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEV 92 V+F + + L+ ++ + F+ P+ +K+EI+ L +YGL V KV T NM G++KR G + Y +PD+KKAYVTL V Sbjct: 10 VHFANLPLKLVMPSSRENIKEVAFKTVPSASKIEIKRVLESLYGLEVEKVQTLNMQGKKKRRGG----IVYAKPDYKKAYVTLKHPV 92 The following BLAST results are available for this feature:
BLAST of NO08G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 18
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03900 ID=NO08G03900|Name=NO08G03900|organism=Nannochloropsis oceanica|type=gene|length=1295bpback to top protein sequence of NO08G03900.1 >NO08G03900.1-protein ID=NO08G03900.1-protein|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bpback to top Synonyms
Publications
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