NO08G02870, NO08G02870 (gene) Nannochloropsis oceanica

Overview
NameNO08G02870
Unique NameNO08G02870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4270
Alignment locationchr8:804769..809038 +

Link to JBrowse

Properties
Property NameValue
DescriptionPbs lyase heat domain protein repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:804769..809038 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016829lyase activity
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR004155PBS_lyase_HEAT
Homology
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BLAST of NO08G02870 vs. NCBI_GenBank
Match: EWM26590.1 (pbs lyase heat domain protein repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 451.4 bits (1160), Expect = 5.700e-123
Identity = 335/729 (45.95%), Postives = 397/729 (54.46%), Query Frame = 0 
Query:   56 KLGEGHHGGIMYKARCDRGKLWAIEVISDPAKATAATALAKQYHLTQDEPWMQSTPAGSAPQQAAGKTIDLCVPEEMYIDHK-GAWCIVSKLPKESMRQRIMTDASYGLESVVNWARQLASSLAGAPKQERDVVSLDNVFLDDADCVLVGNYTPSDCFTPSTV---------------------------SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCIKTEEPDDHQKPQAQSGQQQLPRVKSWSAVNNSSKSSNTFRAGTKEKAT-AXXXXXAEALSREQELKRWGVLMYQVATKTILHGDVDTARRQILRSAQAEM-EGEGSWTNKEALLALLHRQLGISDAGNNPXXXXXXXXXXXXXXXXXTLVGGKVVPAGASLESLANAIADAVLGE-EEKKETSFATAAPSSAAPAAPMTKIQSRPHEFRTEVPEPISTMFRSSPSSVSAVALPALVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQQTRDTKMRQRAFVALGKLGPKAAVPELVLALMPILEKDADPVSRRLAAWTLGSMGNGSPEKVAQAAMPLIRALGDKEAAXXXXXXXXXXXXXXXXXXXGAVATLLHRSVKDADPQVREMALKSITRLRRVTGKRRRNGREEECSDEGKDGAAKDTELTSGGRPKAYAKRRPFCLASATLSMEMASIGEGRGGMRGLMRPSPTVVDVHQF 754
            +LG+G HGG MY+ARC+RGKLWAIEVISDP + TAA ALAKQY L QDEP MQS  A  A  Q  G  IDLCVPEEMY D K GAWCIVSKLPKESMRQRI++DASYGLE+V+NWARQL SSLAG  KQER+V++LDNVFLD+ADCVLVG++ PS  +TPST+                            S                                     XXXXXXXXXXXXXXXX    E      +P       +    K+ S+  + +K S   R   +  A  A        LSRE+EL+RWGVLM+QV TK+IL GDV+ ARRQIL  A+ E  E E   T ++A+L LL++QL +  A                              A AS  SLA AI DAVLGE  EK E         S +  +  T    R  +   + P P+       PS +   A    +P                                  LQQTRD KMR RA VALGKLG KAAVP++VLAL  ILEK +DPV RRLAAWT+GSMG+  P +V  AA+ LIRALGD+EA+                   GA+ATLLHRSVKDADPQVR+MA+KS+ R+ RVTGKRRR        ++G DG A       GGRPK +AKRR   LASATLSMEMASI  G  G    +R SPTVV +H F
Sbjct:   54 RLGKGQHGGTMYRARCERGKLWAIEVISDPTRCTAAAALAKQYLLAQDEPGMQSKVADVAAHQCTG-DIDLCVPEEMYTDAKTGAWCIVSKLPKESMRQRILSDASYGLETVLNWARQLTSSLAGTSKQEREVMTLDNVFLDEADCVLVGDFLPSASYTPSTLXXXXXXXXXXXXXXXXXXXXXXXNLAAGSPKRRSGNKEQGENEVAAGLVEVKAPLHAKDVGGGRDGXXXXXXXXXXXXXXXXXXXXEALSTTDRPFYPCVGGRGKTKKARSSWYSGAKGSRKGRVSPETGAVKASAKSVTLPLSREEELRRWGVLMFQVVTKSILPGDVEAARRQILAMAEDERDECEEPLTVRQAILDLLYKQLDLGGASTLRSAICHSGSSSELASL-----------AAASFMSLAKAITDAVLGEGGEKAEYDVGRILRRSLSRQSSQT---LRDEKEEQDGPMPVPERLSRPPSVLGPDARVDQLP---------------LSAPQGQDQPPATRSILAALQQTRDVKMRHRALVALGKLGGKAAVPDVVLALGEILEKASDPVCRRLAAWTVGSMGSAGPSRVEGAAVSLIRALGDEEASVRAAAAWALGNLGKVCEEKGALATLLHRSVKDADPQVRDMAVKSLARVGRVTGKRRR-----ALGEDGGDGPA------WGGRPKTHAKRRSCSLASATLSMEMASISGGXXGFGDFLRASPTVVGLHHF 741
The following BLAST results are available for this feature:
BLAST of NO08G02870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26590.15.700e-12345.95pbs lyase heat domain protein repeat-containing pr... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL108nonsL108Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR140ngnoR140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008739NSK008739Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02870.1NO08G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539530gene_3618Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g199gene3778Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02870.1NO08G02870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02870 ID=NO08G02870|Name=NO08G02870|organism=Nannochloropsis oceanica|type=gene|length=4270bp
AGCTCCCACGCCTGTCCTTGTGACACAGTCAGCGATTACTGCGGTGCCTG
AAATGAGTCGGCTATCAACTTTCTACTTCAAAGTCATGCGCACGTGGCCA
AGAGTTTCTGTCGGACCCGTGGTTGCAATTATTTCCATTTTGTCATTTTG
TGTTCTGGATTGTTGTGAGAAGTGATTTTGCAACCATAGTCCTCGACGCC
CCTTGCTTCCGAAGGCTCGTCGTCACACACACTCGGTGATCGTAGGCCCT
CGGCCTATTCCATCCTCTGCCGGTGCACTAGCAAGCCCGAAACGAGAACC
GACAATCTGCGAGATCCAGACTGTCGATGCGTCGACTTCCCAAGCCATTC
CCCTCTCGTCAATGTTCATGCTGGTGGAAACATGGGGCTTGTATTTGTTA
ACGCTTTGGTCTTCTTATCGAAATTGTCGAATGGTCCTTACCCTTTGGAA
GACCCCTCGGGGAGGGGTTGCTTCAAGAGAGAGCAACGAGTCGAAAGGCC
AGAGGAGAGTGCACTCGTCGCCTACTCAAGAGTGTCGCTTGCGTTTATTA
TGGTCTTTGATTATAACTGGGGCCTTTCCTTCCTCGTCGCTTTTGTGCAA
CCACACTCATCCCGTCTGCCATCACAATCACACTTCACAGGCACGGGACT
ACAGCCTCTTGCGGGATTGGGCGCCTTGCGCGGCCCTGAACGAGTTCCCA
ACTAGTCACCCTCTCGGACGATCATTTGCAAACGAGGGCCTCGCGGCTAT
CAACTCATCCCTGCAGAATGTGCCGCATGgtacgtgtaagggaggattga
ctcaaagacgttgagtttggggagggagggaatggacgatttcagcagct
tttgccggcatatgtcccgcgaaacgacgtcgcgtcgccgtgtgactaac
acctctaccagtcggttatatgtggtttggtcggggaggaaatacagtgc
ctctcgccgcagtactcttttcttgtcgcgtcgcgtcgcgtcgcgtcgcg
tgctcactcagcctgcaggagacacatatttttgcgtggatatgcgaatc
gcctgcgttttctatcagttatgcaacaagtgaagtgcacatgcatgagt
gcggcggcgaagtcctgacgtcctcggtaccatcagaaatcatgaccttg
tttagaccacccgaccttccttctgatccatgctatttcacctcgcactc
ggtcgggtctctttcaacgtctcgatgtcttatctcttcgatgtctaccc
tccctccccctcttcctttctcccttccacagCAAGGCTCCGGGACGGCG
CCTAACCCGTCGCCCTTCGGGTTCTGGCCCACCATTCAATATCAACAACA
AAATCAACACCAACATCAGCAGCAGCATCGAGAGCACTCAACCATCCGGC
AAGCCGCAGCCCGCCGTCGCTACAAGTACGAGACCAAGCTGGGCGAAGGC
CATCACGGTGGCATCATGTACAAAGCCCGCTGCGACCGGGGCAAGCTTTG
GGCTATCGAGGTCATCTCGGACCCCGCCAAGGCCACAGCCGCCACCGCCC
TCGCGAAGCAATACCATCTCACTCAAGACGAGCCATGGATGCAATCGACC
CCTGCGGGCTCGGCGCCGCAGCAGGCCGCGGGGAAGACAATTGATTTGTG
CGTGCCAGAGGAAATGTACATCGACCACAAGGGTGCGTGGTGTATTGTCT
CGAAGCTGCCGAAGGAGTCGATGCGGCAACGGATTATGACTGATGCCTCT
TACGGGCTGGAGAGCGTGGTGAATTGGGCGAGGCAATTAGCATCGTCCTT
GGCGGGAGCCCCGAAGCAGGAGAGGGATGTCGTCAGCCTGGACAACGTCT
TTCTGGACGACGCGGACTGTGTCTTGGTGGGGAACTACACGCCGTCGGAC
TGTTTCACTCCTTCGACGGTTTCCTCGGAGGAGGAGGATGAAGAGGAAGA
GGAGAACGTGGAAATGCGGCAGCTGCAGGAACAGGAGCAGCAACGACAAC
CAGGATATGGGCACCACCGACAACAGCCAAAAGCCCAGAAGCCGAAGCAG
CAGCGACAATCAAAGAAGGGAAAAGGTGCCATGGTCTGCATAAAGACGGA
GGAGCCTGACGATCATCAAAAGCCACAGGCTCAGTCAGGGCAACAACAAC
TACCACGCGTCAAATCTTGGTCTGCCGTCAATAACAGCAGCAAAAGCAGC
AACACATTCCGCGCCGGCACAAAAGAGAAGGCGACAGCCACGGCCATGGC
GGCGGCGGAGGCGCTGAGTCGGGAACAGGAGTTGAAGAGGTGGGGTGTAT
TGATGTATCAGGTCGCAACAAAGACGATTCTTCACGGAGATGTGGACACG
GCTCGACGGCAGATCTTGCGGAGCGCCCAGGCAGAGATGGAAGGAGAGGG
GTCGTGGACGAACAAAGAGGCGTTGCTTGCTTTATTGCATCGGCAGCTGG
GGATCAGTGATGCAGGGAACAATCCTAGCTCGGGAAACAGCGGCGGCAGC
AGCAGCAGTGGCAGTGCTGCTACCATCACACTTGTTGGAGGGAAAGTCGT
GCCTGCCGGGGCCTCTCTCGAGTCCCTTGCGAACGCCATTGCCGACGCCG
TGCTAGGGGAAGAAGAGAAAAAGGAAACAAGCTTCGCAACAGCAGCACCA
TCATCAGCAGCACCAGCAGCACCCATGACGAAGATCCAATCCAGGCCACA
TGAGTTCCGTACAGAGGTTCCAGAGCCGATATCTACCATGTTCCGTTCCT
CCCCCTCCTCTGTCTCCGCCGTCGCCCTGCCTGCCCTTGTCCCTTCCTCT
TCTGCCCACCATCTCAAACGCCAACAACCGCAGCAGCAACAACATCAGCA
ACAACAACCACCGAATGCCGCCGCCACGCGTTCCATCCTCGCTGCCCTCC
AACAAACTCGCGACACCAAAATGCGCCAACGTGCTTTTGTCGCCCTGGGA
AAGCTTGGGCCCAAGGCAGCTGTGCCCGAGCTGGTTCTGGCGTTAATGCC
CATACTCGAGAAGGATGCTGATCCCGTTTCCCGTCGTCTGGCGGCGTGGA
CCCTGGGAAGTATGGGTAATGGAAGCCCGGAGAAGGTAGCTCAAGCTGCG
ATGCCCCTGATACGTGCCTTGGGGGATAAGGAGGCGGCGGTACGAGCAGC
TGCTGCGTGGGCGCTAGGACACCTAGGGAAGGTGTGTGAAGAGAGGGGGG
CGGTGGCTACGCTGTTGCATCGGTCAGTGAAGGATGCCGACCCTCAGGTG
AGGGAAATGGCGTTGAAAAGCATAACCAGGTTGAGGAGGGTTACGGGGAA
AAGGAGAAGGAATGGAAGGGAGGAAGAGTGTTCGGATGAAGGGAAGGACG
GGGCTGCAAAAGATACAGAGTTGACATCAGGCGGGAGACCGAAGGCGTAT
GCGAAACGGAGGCCGTTTTGCTTGGCAAGCGCGACCCTATCGATGGAGAT
GGCAAGTATTGGCGAAGGAAGGGGAGGGATGAGGGGGCTGATGCGGCCGT
CGCCCACTGTGGTGGACGTTCATCAGTTTAGCTTTGGCCCCCGGAATTGT
AGCATCAACAGCAGCCTAGGCACGAGACCGGAGGCAGGGGAGTGCGGCAG
CCGGAGCAACAGTGTGGGTGTCAAAATCGAACCATCAATGATGCCGCAAG
CCCAATACCTCTAAATTCGGGTCCCGTTTGTCCTTTCCTCCCTTTCTCTT
TCGAACGTAGAAGAGCTCTGAGTTTGTTGTGACACTTTGCTACTTATCGA
GAGGGGAAAATGCGGAGATTGATTGAGAGGGGACACCGCAGGAAAAGCCA
AAAAGGGAGGGATGATGGTTGAACAAGCACAAGCACACGCATGTACTTAC
AAAAAGGGGACACACATACAAACTCTATGAGTGGCGTCTCAATAGAATCG
GTAGGGTGACGTTTCGTACGGACTGTTTAGGGATCGGTCCGCTTGCATGT
TATCATGTCATTTCAATTTGGAAGTATGAGTGCGAAGGAGAGATGGAGTG
AGAGAAAGAGGGAGAAAAATGAAGATGCGATGATCACTATCGAAAGGAAG
GAGGTCCAGACGATAGGGAGGTGGAAGTCAAGATGTAGAGAAGGCATGTG
TACGTAGTAGTTTCAACGCGCTGAGGTGTGAGTGCAGACCCTGGAAATAG
AGAAGGACAATAATCGGAACCGAATCAAATTTTGATGAAGTGTGAGATGA
TGACGAGGAGTAAAAATCCCGAGCAATGAATCAAATAACACCATTAAGCC
TGCCCTTGGATGATTCAAAC
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protein sequence of NO08G02870.1

>NO08G02870.1-protein ID=NO08G02870.1-protein|Name=NO08G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=798bp
MCRMQGSGTAPNPSPFGFWPTIQYQQQNQHQHQQQHREHSTIRQAAARRR
YKYETKLGEGHHGGIMYKARCDRGKLWAIEVISDPAKATAATALAKQYHL
TQDEPWMQSTPAGSAPQQAAGKTIDLCVPEEMYIDHKGAWCIVSKLPKES
MRQRIMTDASYGLESVVNWARQLASSLAGAPKQERDVVSLDNVFLDDADC
VLVGNYTPSDCFTPSTVSSEEEDEEEEENVEMRQLQEQEQQRQPGYGHHR
QQPKAQKPKQQRQSKKGKGAMVCIKTEEPDDHQKPQAQSGQQQLPRVKSW
SAVNNSSKSSNTFRAGTKEKATATAMAAAEALSREQELKRWGVLMYQVAT
KTILHGDVDTARRQILRSAQAEMEGEGSWTNKEALLALLHRQLGISDAGN
NPSSGNSGGSSSSGSAATITLVGGKVVPAGASLESLANAIADAVLGEEEK
KETSFATAAPSSAAPAAPMTKIQSRPHEFRTEVPEPISTMFRSSPSSVSA
VALPALVPSSSAHHLKRQQPQQQQHQQQQPPNAAATRSILAALQQTRDTK
MRQRAFVALGKLGPKAAVPELVLALMPILEKDADPVSRRLAAWTLGSMGN
GSPEKVAQAAMPLIRALGDKEAAVRAAAAWALGHLGKVCEERGAVATLLH
RSVKDADPQVREMALKSITRLRRVTGKRRRNGREEECSDEGKDGAAKDTE
LTSGGRPKAYAKRRPFCLASATLSMEMASIGEGRGGMRGLMRPSPTVVDV
HQFSFGPRNCSINSSLGTRPEAGECGSRSNSVGVKIEPSMMPQAQYL*
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Synonyms
Publications