NO08G02270, NO08G02270 (gene) Nannochloropsis oceanica

Overview
NameNO08G02270
Unique NameNO08G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr8:665071..665661 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial import inner membrane translocase subunit tim22
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:665071..665661 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Homology
BLAST of NO08G02270 vs. NCBI_GenBank
Match: EWM26762.1 (mitochondrial import inner membrane translocase subunit tim22 [Nannochloropsis gaditana])

HSP 1 Score: 345.9 bits (886), Expect = 8.300e-92
Identity = 167/175 (95.43%), Postives = 172/175 (98.29%), Query Frame = 0
Query:   22 KRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH 197
            K D+LFT+PPPFPLPFYKYVSLPQTPAG VAVAPPNPQENCVGRSVFGA+AGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQ+RLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFA FSG+MEVVMGPH
Sbjct:   33 KPDLLFTSPPPFPLPFYKYVSLPQTPAGMVAVAPPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMGPH 207          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: EJK70956.1 (hypothetical protein THAOC_07645 [Thalassiosira oceanica])

HSP 1 Score: 159.1 bits (401), Expect = 1.400e-35
Identity = 85/197 (43.15%), Postives = 118/197 (59.90%), Query Frame = 0
Query:    3 SPPPSTSTDNPTPPVHGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPN---PQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH 197
            S P     D+   P    + R  L     P+P P+ +  + P       A  PPN     E+C  ++  G I G  +G++MG+FLGA+ DM+P + II G+E PQAP  EQMR   RAT ++  +W R F  +T +F G +C+VEK+RGKHD +N+V+SGC  GAA+ AKQGPQA+  GC GFA+FS V++  MG H
Sbjct:   56 STPAGPLVDSSASPHQVDMSRGALTMRGLPYPQPWARANASP-------AELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMGTH 245          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: CBJ27223.1 (Mitochondrial import inner membrane translocase subunit TIM22 homolog [Ectocarpus siliculosus])

HSP 1 Score: 156.0 bits (393), Expect = 1.200e-34
Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 0
Query:   35 LPFY-KYVSLPQTPAGTVAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMG 195
            LPF+  +V  P   A      PP   E+C  + + G + GAG+G + G+FLGAMGDM P + +INGRE PQAP  EQ RLAY+ T +R     RNF + +A+F G +CV+EK RGK D  N+V +GC  GAA   KQGPQAAC GC G A FS +M+ +MG
Sbjct:   32 LPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQP-LQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMG 191          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: GAX14591.1 (hypothetical protein FisN_6Lh371 [Fistulifera solaris])

HSP 1 Score: 154.1 bits (388), Expect = 4.600e-34
Identity = 85/186 (45.70%), Postives = 116/186 (62.37%), Query Frame = 0
Query:   15 PPV----HGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPN---PQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194
            PPV      P   D +     P+PLP +K V+ P  P       PP+      +C G+   G I GAG+G +MG+FLGA+ D +P + +I GR+ PQAP  EQMR+  RAT E+  +WA NF  +T +F+G +C+VEK+RGK+D +N+V SGC  GAA+ AK GPQ+A LGC GFA FS V++  M
Sbjct:   44 PPVPARDDSPYSIDSITRKSLPYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 221          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: GAX22122.1 (hypothetical protein FisN_6Hh371 [Fistulifera solaris])

HSP 1 Score: 152.9 bits (385), Expect = 1.000e-33
Identity = 89/193 (46.11%), Postives = 120/193 (62.18%), Query Frame = 0
Query:    4 PPPSTSTDNPTPPVHGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGTVAVAPPN---PQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194
            PP  T  D+P    H  I R  L     P+PLP +K V+ P  P       PP+      +C G+   G I GAG+G +MG+FLGA+ D +P + +I GR+ PQAP  EQMR+  RAT E+  +WA NF  +T +F+G +C+VEK+RGK+D +N+V SGC  GAA+ AK GPQ+A LGC GFA FS V++  M
Sbjct:   84 PPVPTRDDSPYSIDH--ITRRSL-----PYPLP-WKPVASPTEP-------PPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFM 261          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: XP_002176835.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51298.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 150.2 bits (378), Expect = 6.700e-33
Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = 0
Query:   61 NCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194
            +C G++  G I G  +G++MG+FLGAM D +P + +I GRE PQAP  EQ+++  RAT ++  +W RNF  +T +F G +C+VEK+RGKHD +N+V SGC  GAAL AK GPQAA +GC GFA FS V++  M
Sbjct:    4 SCGGKAAIGVIGGGVMGLLMGVFLGAMSDATPPVQVIAGREVPQAPLREQIKVTMRATGDKSLYWCRNFAFITGVFGGSECLVEKYRGKHDVWNSVASGCITGAALQAKSGPQAAAVGCGGFAAFSLVIDTFM 136          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: OEU10163.1 (mitochondrial import inner membrane translocase, subunit Tim17/22, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 150.2 bits (378), Expect = 6.700e-33
Identity = 70/134 (52.24%), Postives = 93/134 (69.40%), Query Frame = 0
Query:   60 ENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVM 194
            ++C G++  G   G  +G++MG+FLGA+ D SP I  + GR+ PQAP  EQ+R   RAT E+  +W RNF  +T +F G +C+VEKFRGKHD +N V+SGC  GAAL AK GPQAA +GC GFA FS V++  M
Sbjct:    1 DSCGGKAAIGVFGGGIMGLLMGVFLGALSDSSPPIQAVGGRDVPQAPFKEQVRFTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAKAGPQAAAVGCGGFAAFSIVIDSFM 134          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: XP_002288595.1 (tim22-like protein [Thalassiosira pseudonana CCMP1335] >EED94031.1 tim22-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 133.7 bits (335), Expect = 6.400e-28
Identity = 60/121 (49.59%), Postives = 87/121 (71.90%), Query Frame = 0
Query:   76 LGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH 197
            +G++MG+F+GA+ D++P + +ING+        EQMR   RAT ++  +W R F  +T +F G +C+VEK+RGKHD +NAV+SGC  GAA+ AKQGPQA+ +GC GFA FS V++ +MG H
Sbjct:    1 MGLLMGVFMGALTDLTPPVTVINGK--------EQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNAVVSGCITGAAMQAKQGPQASAIGCGGFAAFSLVIDSIMGTH 113          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: XP_008899567.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI54938.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK94774.1 hypothetical protein, variant [Phytophthora parasitica] >ETL48173.1 hypothetical protein, variant [Phytophthora parasitica] >ETM01269.1 hypothetical protein, variant [Phytophthora parasitica] >ETM54455.1 hypothetical protein, variant [Phytophthora parasitica] >ETN14916.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO83690.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP24757.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP52739.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 127.5 bits (319), Expect = 4.600e-26
Identity = 63/153 (41.18%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   43 LPQTPAGTVAVAPPNP-QENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMG 195
            LP  P   +    PNP  E+C G+    A  G  +G + G+ LG+   ++P +P+   RE P+ P  E +  ++R T  +C +W  NF+ ++A+FSG++C  EK RG+HD  N +++GC  GAAL+A QG QA CLGCAGFA FS  + V  G
Sbjct:   50 LPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESLAGSWRVTAGKCRYWGNNFLVISAMFSGLECATEKIRGRHDVGNELVAGCATGAALAAGQGIQAQCLGCAGFAAFSYAINVFTG 202          
BLAST of NO08G02270 vs. NCBI_GenBank
Match: OWZ02326.1 (Mitochondrial Protein Translocase [Phytophthora megakarya])

HSP 1 Score: 125.6 bits (314), Expect = 1.800e-25
Identity = 70/177 (39.55%), Postives = 99/177 (55.93%), Query Frame = 0
Query:   29 NPPPFPLPFYK----------YVSLPQTPAGTVAVAPPNP-QENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMG 195
            NP  FP  F K          +  LP  P   +    PNP  E+C G+    A  G  +G + G+ LG+   ++P +P+   RE P+ P  E M  ++R T  +C +W  NF+ ++A+FSG++C  EK RG+HD  N +++GC  GAAL+A QG QA CLGCAGFA FS  + V  G
Sbjct:   26 NPFLFPRSFLKMHLLHDTVGIHPFLPAYPPQILQWQQPNPITESCAGKFFLSAAMGYVMGNVFGLVLGSYEGITPPVPLPGQRELPKVPWRESMVGSWRVTKGKCRYWGNNFLVISAMFSGLECASEKIRGRHDVGNELVAGCATGAALAAGQGFQAQCLGCAGFAAFSYAINVFTG 202          
The following BLAST results are available for this feature:
BLAST of NO08G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26762.18.300e-9295.43mitochondrial import inner membrane translocase su... [more]
EJK70956.11.400e-3543.15hypothetical protein THAOC_07645 [Thalassiosira oc... [more]
CBJ27223.11.200e-3449.69Mitochondrial import inner membrane translocase su... [more]
GAX14591.14.600e-3445.70hypothetical protein FisN_6Lh371 [Fistulifera sola... [more]
GAX22122.11.000e-3346.11hypothetical protein FisN_6Hh371 [Fistulifera sola... [more]
XP_002176835.16.700e-3351.88predicted protein, partial [Phaeodactylum tricornu... [more]
OEU10163.16.700e-3352.24mitochondrial import inner membrane translocase, s... [more]
XP_002288595.16.400e-2849.59tim22-like protein [Thalassiosira pseudonana CCMP1... [more]
XP_008899567.14.600e-2641.18hypothetical protein, variant [Phytophthora parasi... [more]
OWZ02326.11.800e-2539.55Mitochondrial Protein Translocase [Phytophthora me... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008807NSK008807Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02270.1NO08G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
TIM22gene3835Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02270.1NO08G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02270 ID=NO08G02270|Name=NO08G02270|organism=Nannochloropsis oceanica|type=gene|length=591bp
ATGGCATCTCCCCCACCCAGCACCAGCACCGACAACCCCACCCCACCCGT
CCACGGTCCCATCAAGCGGGACGTCCTATTCACCAACCCACCACCCTTTC
CTCTGCCCTTCTATAAGTACGTCTCGTTGCCACAGACACCCGCGGGAACG
GTGGCAGTGGCACCGCCCAATCCCCAGGAAAATTGTGTTGGCCGAAGTGT
GTTTGGCGCAATTGCAGGTGCGGGACTGGGCGTGATGATGGGCATTTTTC
TGGGTGCTATGGGAGACATGTCACCCGCTATCCCCATTATCAATGGCCGA
GAGGCCCCGCAGGCACCTGCGGGGGAGCAGATGCGCCTGGCCTATCGCGC
CACCTTCGAGCGCTGCGGGCATTGGGCCCGCAATTTCATGGCCCTCACCG
CCTTGTTTTCGGGTGTGGACTGTGTTGTGGAAAAGTTCCGTGGCAAGCAC
GATGCATATAATGCGGTTATCTCTGGCTGTGGGGTTGGGGCTGCGCTCTC
GGCCAAGCAAGGTCCCCAGGCGGCGTGTCTGGGATGCGCGGGATTTGCCA
TTTTTTCGGGCGTCATGGAGGTTGTGATGGGGCCACATTAA
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protein sequence of NO08G02270.1

>NO08G02270.1-protein ID=NO08G02270.1-protein|Name=NO08G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MASPPPSTSTDNPTPPVHGPIKRDVLFTNPPPFPLPFYKYVSLPQTPAGT
VAVAPPNPQENCVGRSVFGAIAGAGLGVMMGIFLGAMGDMSPAIPIINGR
EAPQAPAGEQMRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKH
DAYNAVISGCGVGAALSAKQGPQAACLGCAGFAIFSGVMEVVMGPH*
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Synonyms
Publications