NO08G01960, NO08G01960 (gene) Nannochloropsis oceanica

Overview
NameNO08G01960
Unique NameNO08G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4863
Alignment locationchr8:591223..596085 +

Link to JBrowse

Properties
Property NameValue
DescriptionCobalamin (Vitamin B12) biosynthesis CobW
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:591223..596085 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003495CobW/HypB/UreG_dom
IPR011629Cbl_biosynth_CobW-like_C
Homology
BLAST of NO08G01960 vs. NCBI_GenBank
Match: EWM26674.1 (Cobalamin (vitamin B12) biosynthesis CobW [Nannochloropsis gaditana])

HSP 1 Score: 444.1 bits (1141), Expect = 6.500e-121
Identity = 254/423 (60.05%), Postives = 290/423 (68.56%), Query Frame = 0
Query:  127 LSSSSMGSSTAIGISKIIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALK---SEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTEADLSKLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFL-----NVCGAEHVHGGNEEGRRDDEVRTVAWVEGVEVKVEAVKQWLAELLWRDD------------XXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEG 530
            LS +  GSS  I I KI+PVTII+GFLG+GKTTLLN+ILTQPHGKRIAVIENEFG+GLGIESAIAKDGADGSSLEGFFELANGCICCSVK+DLLATLE+LVQRKSQFDYV+IETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAK+I RH+                        G++GQ +   S    +K   +E   +            +  +   +REEA++QICVADRI+LNKTDLV E D   LE ELRGLNGMARIQRT +S +DLDFVLGL+CY  + K+D  LPFL     N  G  H HGG +      EV T+A VE VEV  EAVK+WLA+LLWRDD                               IYRMKGTL+VAGS+++HILQAVHETFELE SQT  G G
Sbjct:   44 LSETKSGSSNPIPIDKIVPVTIITGFLGSGKTTLLNHILTQPHGKRIAVIENEFGKGLGIESAIAKDGADGSSLEGFFELANGCICCSVKNDLLATLEVLVQRKSQFDYVIIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKYISRHIH---------------------RGGQEGQTFQGDSHLERVKNRGAERVTSDVSNICENLRCPVASEEVYYREEAFRQICVADRIVLNKTDLVPEEDTISLEDELRGLNGMARIQRTVYSHVDLDFVLGLECYSGKTKED-PLPFLSCGERNGDGERHSHGGVK------EVTTLAIVEPVEVDGEAVKRWLADLLWRDDPSDGKEGEREDVGRDEGIQDSIRESRCQRQQIYRMKGTLSVAGSDMVHILQAVHETFELEASQTPGGGG 438          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: XP_005824222.1 (hypothetical protein GUITHDRAFT_158618 [Guillardia theta CCMP2712] >EKX37242.1 hypothetical protein GUITHDRAFT_158618 [Guillardia theta CCMP2712])

HSP 1 Score: 263.5 bits (672), Expect = 1.600e-66
Identity = 165/442 (37.33%), Postives = 228/442 (51.58%), Query Frame = 0
Query:  127 LSSSSMGSSTAIGIS--KIIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTEADLSKLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEH-----VHGGNEEGRRDDEVRTVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAG 562
            ++S + G +TA      K++PVT++SGFLG+GKTTLLN ILT  HGKRIAVI+NEFG+ LG+ SA+A +G  G   E  FE+ NGCICCSV+ DL+ TLE +++ +++FDY+L+ET+G+A+PGP+AS  W+D ELES L LD IVT+VDAKHI +HL                                                 +P L            C   EA QQI  ADRILLNK DLVTEA++  +E  LR +NG+A I RT  S+IDLD +L +  + A +  +V L      G EH      H          ++ TV+  E   +    +  WL  +LW ++                   I+RMKG L + G E   +LQ VH  F++ P+Q  V    +             ++V IG+ LD   L+ G
Sbjct:    1 MASPAAGHNTAGQAKPLKLVPVTVLSGFLGSGKTTLLNRILTSHHGKRIAVIQNEFGEDLGLGSALAAEGKAGQIFEECFEMNNGCICCSVRDDLINTLERIMKNRNKFDYILVETTGMANPGPIASIFWLDSELESSLHLDAIVTLVDAKHILKHL------------------------------------------------DDPAL------------CSSLEAAQQIAFADRILLNKIDLVTEAEVEVVERRLREINGVAPIYRTQNSEIDLDNILDVKAFDAERAKEVELGTSADKGCEHGEDCSGHDXXXXXXXXXKIGTVSCSEDRALDERKLNLWLGGVLWENE---------------GGMTIFRMKGLLTIHGEETQMVLQGVHNLFDILPAQAQVDSQSRS------------KIVFIGQNLDRLALQKG 355          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: OQR85746.1 (cobalamin synthesis protein [Achlya hypogyna])

HSP 1 Score: 261.2 bits (666), Expect = 7.800e-66
Identity = 166/430 (38.60%), Postives = 220/430 (51.16%), Query Frame = 0
Query:  140 ISKIIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTE-ADLSKLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRD--DEVRTVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATA 567
            ++K +PVT+++GFLGAGKTTLLNYILTQ HGKRIAVIENEFG+ +G+ES IA+DGADG +   F+EL NGCICC+V+ DL++TLE L+ R+ +FDYVL+ET+G+ADPG +AS  WVD ELE ++ LDGIVTVVDAK++  H                                                            L G     R+EA  QI  ADRIL+NK DL+    D + LEA+L  +N +A    T  S IDLD +L +  + + +  DV          +++   N+    D   +V T        + V AV++WL  LLW                       YR+KG +AVA      ILQ V + FEL PS+           GEE     E ++V IG  L    L+AG  A A
Sbjct:    1 MTKQVPVTVLTGFLGAGKTTLLNYILTQDHGKRIAVIENEFGEEIGVESLIARDGADGETFADFYELNNGCICCAVRDDLVSTLEELLTRRDRFDYVLVETTGMADPGKLASIFWVDTELEGRIVLDGIVTVVDAKNVMHH------------------------------------------------------------LNGSETSQRQEALSQIAYADRILINKADLMPALEDRAALEAQLHSINAIAPCLWTERSVIDLDTILNVQAFSSERAMDVE---------QYLTATNQSVAADHAQQVSTTCVRSRTPISVAAVERWLGTLLWE------------APEGDDASYFYRIKGVVAVADDHRKFILQGVQDLFELTPSE---------PWGEE---APETKIVFIGLRLQPAALQAGLEAAA 337          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: XP_008621186.1 (hypothetical protein SDRG_16747 [Saprolegnia diclina VS20] >EQC25384.1 hypothetical protein SDRG_16747 [Saprolegnia diclina VS20])

HSP 1 Score: 258.1 bits (658), Expect = 6.600e-65
Identity = 160/428 (37.38%), Postives = 224/428 (52.34%), Query Frame = 0
Query:  140 ISKIIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLV-TEADLSKLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVRTVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATA 567
            ++K +PVT+++GFLGAGKTTLLNYILTQ HGKRIAVIENEFG+ +G+ES IA+DGADG +   F+EL NGCICC+V+ DL++TLE L+ R+ +FDYVL+ET+G+ADPG +AS  WVD ELE ++ LDGIVTVVDAK++  HL                      +  + GQ                                      R+EA  QI  ADRIL+NK DLV +  D   LEA+L G+N +A +  T  S+IDLD +L +  + + +  DV         A +    ++  R   +V T        V + A+++WL  LLW  +                    YR+KG ++V   +   ILQ V + FEL PS+    +             +  +++ IG  L    L AG L+ +
Sbjct:    1 MTKQVPVTVLTGFLGAGKTTLLNYILTQNHGKRIAVIENEFGEEIGVESLIARDGADGETFADFYELNNGCICCAVRDDLVSTLEELLTRRDRFDYVLVETTGMADPGKLASIFWVDTELEGRIVLDGIVTVVDAKNVALHL----------------------DGDEHGQ--------------------------------------RQEALSQIAYADRILINKADLVPSMTDRDALEAQLHGINAIAPLIWTERSQIDLDAILNVQAFSSERALDVE----RFLAATNQTVSSDHAR---QVSTYCIRSDASVTIAAMERWLGSLLWESE---------------ESSHYYRIKGIVSVVDDDRKFILQGVQDLFELTPSEPWAVDEP-----------RVTKIIFIGLELQPEMLEAGLLSAS 335          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: XP_012198894.1 (hypothetical protein SPRG_04990 [Saprolegnia parasitica CBS 223.65] >KDO30196.1 hypothetical protein SPRG_04990 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 257.3 bits (656), Expect = 1.100e-64
Identity = 153/385 (39.74%), Postives = 210/385 (54.55%), Query Frame = 0
Query:  140 ISKIIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLV-TEADLSKLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVRTVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQ 524
            ++K +PVT+++GFLGAGKTTLLNYILTQ HGKRIAVIENEFG+ +G+ES IA+DGADG +   F+EL NGCICC+V+ DL++TLE L+ R+ +FDYVL+ET+G+ADPG +AS  WVD ELE ++ LDGI+TVVDAK++  HL                      +  + GQ                                      R+EA  QI  ADRIL+NK DLV +  D   LEA+L G+N +A +  T  S+IDLD +L +  + + +  DV         A +    ++  R   +V T        V + A+++WL  LLW  +                    YR+KG ++V   E   ILQ V + FEL PS+
Sbjct:    1 MTKQVPVTVLTGFLGAGKTTLLNYILTQNHGKRIAVIENEFGEEIGVESLIARDGADGETFADFYELNNGCICCAVRDDLVSTLEELLTRRDRFDYVLVETTGMADPGKLASIFWVDTELEGRIVLDGIITVVDAKNVALHL----------------------DGDEHGQ--------------------------------------RQEALSQIAYADRILINKADLVPSTTDREALEAQLHGINAIAPLIWTERSQIDLDAILNVQAFSSERALDVE----RFLAATNQTVSSDHAR---QVSTYCIRSDAPVTIAAMERWLGHLLWESE---------------ESSHYYRIKGIVSVVDDERKFILQGVQDLFELTPSE 303          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: KUF88115.1 (COBW domain-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 250.8 bits (639), Expect = 1.000e-62
Identity = 157/438 (35.84%), Postives = 228/438 (52.05%), Query Frame = 0
Query:  143 IIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTEADLS-KLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVR-----------TVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATAVS 569
            +IPVTI+SGFLGAGKTTLL +IL+  HGKRIAVIENEFG+ +G+ES +AKDGA G  ++GF+EL+NGC+CCSV+ DL+ TLE L++R+ +FDY+++ET+G+ADPG VAS  WVD+ELE ++ LDGIVT+VD+  +  HL                                             +TQ                     EA  Q+  ADRILLNK DLV + +   ++E  +  +NGMA ++ T  S+++LD +L +  +   + + V    LN   AE    G++    +DE             T   +    +  E +++WL ELLW  D                   ++R+KG +A+AG     ILQAVHE FE+  S+    E +        +  +  ++V IG  L +G L AG  +  V+
Sbjct:   23 MIPVTILSGFLGAGKTTLLRFILSASHGKRIAVIENEFGEEIGVESLVAKDGAGGDVMDGFYELSNGCVCCSVRDDLVNTLEKLLERRDRFDYIVVETTGMADPGKVASVFWVDDELEGRIFLDGIVTLVDSPRLNFHL------------------------------------------NHPDTQ--------------------REAAAQLAYADRILLNKGDLVPDKEQRLEIEQTVTQVNGMASVRWTERSRVNLDDILNIKSFTTSRAEQVEKE-LNTLLAEGKEEGHDHDNCNDESHDHATHTGGMQTTCVRIRDGPLDQEKLERWLGELLWEQD-EDVDAEIKPGSEAATRQKLFRVKGVVAIAGETNKFILQAVHELFEVYASEERWTEDELNS-----KDSRVTQVVFIGLHLRKGELEAGLRSCVVT 391          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: KUF92795.1 (hypothetical protein AM588_10007630 [Phytophthora nicotianae])

HSP 1 Score: 250.8 bits (639), Expect = 1.000e-62
Identity = 157/438 (35.84%), Postives = 228/438 (52.05%), Query Frame = 0
Query:  143 IIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTEADLS-KLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVR-----------TVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATAVS 569
            +IPVTI+SGFLGAGKTTLL +IL+  HGKRIAVIENEFG+ +G+ES +AKDGA G  ++GF+EL+NGC+CCSV+ DL+ TLE L++R+ +FDY+++ET+G+ADPG VAS  WVD+ELE ++ LDGIVT+VD+  +  HL                                             +TQ                     EA  Q+  ADRILLNK DLV + +   ++E  +  +NGMA ++ T  S+++LD +L +  +   + + V    LN   AE    G++    +DE             T   +    +  E +++WL ELLW  D                   ++R+KG +A+AG     ILQAVHE FE+  S+    E +        +  +  ++V IG  L +G L AG  +  V+
Sbjct:   23 MIPVTILSGFLGAGKTTLLRFILSASHGKRIAVIENEFGEEIGVESLVAKDGAGGDVMDGFYELSNGCVCCSVRDDLVNTLEKLLERRDRFDYIVVETTGMADPGKVASVFWVDDELEGRIFLDGIVTLVDSPRLNFHL------------------------------------------NHPDTQ--------------------REAAAQLAYADRILLNKGDLVPDKEQRLEIEQTVTQVNGMASVRWTERSRVNLDDILNIKSFTTSRAEQVEKE-LNTLLAEGKEEGHDHDNCNDESHDHATHTGGMQTTCVRIRDGPLDQEKLERWLGELLWEQD-EDVDAEIKPGSEAATRQKLFRVKGVVAIAGETNKFILQAVHELFEVYASEERWTEDELNS-----KDSRVTQVVFIGLHLRKGELEAGLRSCVVT 391          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: ETI52186.1 (hypothetical protein F443_04635 [Phytophthora parasitica P1569] >ETK92060.1 hypothetical protein L915_04511 [Phytophthora parasitica] >ETL98624.1 hypothetical protein L917_04354 [Phytophthora parasitica] >ETP49906.1 hypothetical protein F442_04684 [Phytophthora parasitica P10297])

HSP 1 Score: 249.2 bits (635), Expect = 3.100e-62
Identity = 156/438 (35.62%), Postives = 227/438 (51.83%), Query Frame = 0
Query:  143 IIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTEADLS-KLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVR-----------TVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATAVS 569
            +IPVTI+SGFLGAGKTTLL +IL+  HGKRIAVIENEFG+ +G+ES +AKDGA G  ++GF+EL+NGC+CCSV+ DL+ TLE L++R+ +FDY+++ET+G+ADPG VAS  WVD+ELE ++ LDGIVT+VD+  +  HL                                             +TQ                     EA  Q+  ADRILLNK DLV + +   ++E  +  +NGMA ++ T  S+++LD +L +  +   + + V    LN   AE    G++    +DE             T   +    +  E +++WL ELLW  D                   ++R+KG +A+AG     ILQAVHE FE+  S+    E +        +  +  ++V IG  L +G L  G  +  V+
Sbjct:   23 MIPVTILSGFLGAGKTTLLRFILSASHGKRIAVIENEFGEEIGVESLVAKDGAGGDVMDGFYELSNGCVCCSVRDDLVNTLEKLLERRDRFDYIVVETTGMADPGKVASVFWVDDELEGRIFLDGIVTLVDSPRLNFHL------------------------------------------NHPDTQ--------------------REAAAQLAYADRILLNKGDLVPDKEQRLEIEQTVTQVNGMASVRWTERSRVNLDDILNIKSFTTSRAEQVEKE-LNTLLAEGKEEGHDHDNCNDESHDHATHTGGMQTTCVRIRDGPLDQEKLERWLGELLWEQD-EDVDVEIKPGSEAATRQKLFRVKGVVAIAGETNKFILQAVHELFEVYASEERWTEDELNS-----KDSRVTQVVFIGLHLRKGELEVGLRSCVVT 391          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: ETM51792.1 (hypothetical protein L914_04455 [Phytophthora parasitica] >ETO80948.1 hypothetical protein F444_04670 [Phytophthora parasitica P1976])

HSP 1 Score: 249.2 bits (635), Expect = 3.100e-62
Identity = 156/438 (35.62%), Postives = 227/438 (51.83%), Query Frame = 0
Query:  143 IIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTEADLS-KLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVR-----------TVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATAVS 569
            +IPVTI+SGFLGAGKTTLL +IL+  HGKRIAVIENEFG+ +G+ES +AKDGA G  ++GF+EL+NGC+CCSV+ DL+ TLE L++R+ +FDY+++ET+G+ADPG VAS  WVD+ELE ++ LDGIVT+VD+  +  HL                                             +TQ                     EA  Q+  ADRILLNK DLV + +   ++E  +  +NGMA ++ T  S+++LD +L +  +   + + V    LN   AE    G++    +DE             T   +    +  E +++WL ELLW  D                   ++R+KG +A+AG     ILQAVHE FE+  S+    E +        +  +  ++V IG  L +G L  G  +  V+
Sbjct:   23 MIPVTILSGFLGAGKTTLLRFILSASHGKRIAVIENEFGEEIGVESLVAKDGAGGDVMDGFYELSNGCVCCSVRDDLVNTLEKLLERRDRFDYIVVETTGMADPGKVASVFWVDDELEGRIFLDGIVTLVDSPRLNFHL------------------------------------------NHPDTQ--------------------REAAAQLAYADRILLNKGDLVPDKEQRLEIEQTVTQVNGMASVRWTERSRVNLDDILNIKSFTTSRAEQVEKE-LNTLLAEGKEEGHDHDNCNDESHDHATHTGGMQTTCVRIRDGPLDQEKLERWLGELLWEQD-EDVDAEIKPGSEAATRQKLFRVKGVVAIAGETNKFILQAVHELFEVYASEERWTEDELNS-----KDSRVTQVVFIGLHLRKGELEVGLRSCVVT 391          
BLAST of NO08G01960 vs. NCBI_GenBank
Match: XP_008901926.1 (hypothetical protein PPTG_08930 [Phytophthora parasitica INRA-310] >ETN12919.1 hypothetical protein PPTG_08930 [Phytophthora parasitica INRA-310])

HSP 1 Score: 249.2 bits (635), Expect = 3.100e-62
Identity = 156/438 (35.62%), Postives = 227/438 (51.83%), Query Frame = 0
Query:  143 IIPVTIISGFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSLEGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVASCLWVDEELESQLRLDGIVTVVDAKHIGRHLRXXXXXXXXXXXXXXXXXXXSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHREEAYQQICVADRILLNKTDLVTEADLS-KLEAELRGLNGMARIQRTNFSKIDLDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVR-----------TVAWVEGVEVKVEAVKQWLAELLWRDDXXXXXXXXXXXXXXXXXXXIYRMKGTLAVAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIGKGLDEGHLRAGFLATAVS 569
            +IPVTI+SGFLGAGKTTLL +IL+  HGKRIAVIENEFG+ +G+ES +AKDGA G  ++GF+EL+NGC+CCSV+ DL+ TLE L++R+ +FDY+++ET+G+ADPG VAS  WVD+ELE ++ LDGIVT+VD+  +  HL                                             +TQ                     EA  Q+  ADRILLNK DLV + +   ++E  +  +NGMA ++ T  S+++LD +L +  +   + + V    LN   AE    G++    +DE             T   +    +  E +++WL ELLW  D                   ++R+KG +A+AG     ILQAVHE FE+  S+    E +        +  +  ++V IG  L +G L  G  +  V+
Sbjct:   23 MIPVTILSGFLGAGKTTLLRFILSASHGKRIAVIENEFGEEIGVESLVAKDGAGGDVMDGFYELSNGCVCCSVRDDLVNTLEKLLERRDRFDYIVVETTGMADPGKVASVFWVDDELEGRIFLDGIVTLVDSPRLNFHL------------------------------------------NHPDTQ--------------------REAAAQLAYADRILLNKGDLVPDKEQRLEIEQTVTQVNGMASVRWTERSRVNLDDILNIKSFTTSRAEQVEKE-LNTLLAEGKEEGHDHDNCNDESHDHATHTGGMQTTCVRIRDGPLDQEKLERWLGELLWEQD-EDVDAEIKPGSEAATRQKLFRVKGVVAIAGETNKFILQAVHELFEVYASEERWTEDELNS-----KDSRVTQVVFIGLHLRKGELEVGLRSCVVT 391          
The following BLAST results are available for this feature:
BLAST of NO08G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26674.16.500e-12160.05Cobalamin (vitamin B12) biosynthesis CobW [Nannoch... [more]
XP_005824222.11.600e-6637.33hypothetical protein GUITHDRAFT_158618 [Guillardia... [more]
OQR85746.17.800e-6638.60cobalamin synthesis protein [Achlya hypogyna][more]
XP_008621186.16.600e-6537.38hypothetical protein SDRG_16747 [Saprolegnia dicli... [more]
XP_012198894.11.100e-6439.74hypothetical protein SPRG_04990 [Saprolegnia paras... [more]
KUF88115.11.000e-6235.84COBW domain-containing protein 1 [Phytophthora nic... [more]
KUF92795.11.000e-6235.84hypothetical protein AM588_10007630 [Phytophthora ... [more]
ETI52186.13.100e-6235.62hypothetical protein F443_04635 [Phytophthora para... [more]
ETM51792.13.100e-6235.62hypothetical protein L914_04455 [Phytophthora para... [more]
XP_008901926.13.100e-6235.62hypothetical protein PPTG_08930 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008836NSK008836Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01960.1NO08G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564448gene_3526Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g103gene3861Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01960.1NO08G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01960 ID=NO08G01960|Name=NO08G01960|organism=Nannochloropsis oceanica|type=gene|length=4863bp
ACTCCCCCTCCCGCCCCACTCTCTCTCCCTTCCTTTCCGTTCTCCTCCTC
TTGCTCACTCCGCAATTGCAGCGCCAAACGAATGCTAAAGTAAAACATCG
TTGAACAGAACGCAAATGCCGCCGTGAACCCTCCATTCACAACAACCACA
AACACCCCTCCTCCCTCCCACTCCCAAAAGGGAGGTCGGGGGGCCATCCC
TGCCGCCACCGCCAAGAGTATCGCCAGCAAATTCACAATTCCAAACAGCA
AAACAAGACGATAACATCGACAATAGTGAGTCAAAGCCCGCGAGAGTGGA
TCGAGTGCCATGGAGACAAAGGATGAAAATTGTAATATCTTCCCACTATG
TTGATACCCCCCTGTCGAGATTGGGGTGAGGGCAGGAATGACGCCATAGG
CCCAGGCACTGATTCCGAATTGAGCAAGTAATAGAGGGTAAATAAGGTGG
AGGACGGGTTTCTCTTTGGGAACGGAGGGGGAGAAGGAGAAAGATGGGGA
GGAGAGAGGGAGGACGAGGGTGCTCTCTTCGTTTTCCTCGTGGGTGGTGC
TTTGGTGGAGGAGGAGGAGGCGTTTATAAGCTGATACGTCGGATGCGTGT
CTTGTTTCCTCTGCTACTGTTGCTGCTGCTCTCGGCGCTGTTGCTGTTGA
GGTCATCTTGCGTGCTTCCTGTCGTTTCTGCTCCCTTAAGAGGTACGAGA
AGCCAAGCACCGAAAAGAGGTAAAAGGCACTGACGCCCTGGAAAAATGCA
GTTACCGAAAACCTCGGATGCCTCCCCCCTACATTTTGAGCGAGCGCCAA
TAAAGATACCAATATGCCTGATAAGCCCTCTCCTGTGGCTAGGGCGGAGA
TGTAGCGACTTTCCCATTGCGCGACGAAGGGGTAGAGGTAGAGTGAGGAG
GAGTTATTAATCGAGCCTGCAAAGAAAGTCAAAATGATCAAGGCGATTGA
ATGGGAACTGTTGCTGTCTTCCATGTTGCCGTTGCTCATGTCTGTGGTAG
AGGACCAACAGAAGCTCATGAGCTGACTTGTGAGGATGCCGCCGAGGAGG
AGGATCCAAATGACGGATTCGAGGTGCATTGCTTCGGGGCCGCGGAGCAT
GACTGCAGCTGGGACGACATTGGCAACCTGCGGGTGAGGCGAGGGTGTCG
TGTCGTTGAGAATGGGGATGACATGAGCTGGGAGTAGGGCTTGCTTCGGG
TCCCACCGCATGCATGCTAGCCCCCTTCCTCTTGAGCCCTTTCCTACCTG
GAGCGACAATAGCAAATAGCTTCCTAGCTTATCGGCTTCCGGCAACGCAG
CAACAAAGGCTGCCATCTCCGCCCATAGTGCATTTGACAGCATAAAGGAC
GACAGACCCAGGGCCGTGAAGGCAGCATGAAGTGCCCATGGTGGAGGGGC
AGGCGGGAGCTTTGGGGGAAAGGACGAAGAGGAGTGGCGAATGACGCTTG
CCATTTTTGCGCTTGTGCAGACTCCGTGCTTTTATTTATGTCTCTTTCTG
TCTAATTTCATTGCCAAAAGTGCTGCTTTGACCCTCTATGTGTGTTGTGA
TGTGGAAAGGGTGAGCTGGCATTATTGCGCATTGCGCATCTTCAATTTGA
ACGCTCATGAACTGACCCTGCTCTGCACTACGTACACACACTCAGACATG
GCAAGCAAACAATGCCGGGAGCAAGAACAGGAGGAGGACGATGACGACGA
CGATGGCCCCCCCGAGCTGGTGGCTTTGCCACTGCCGTCCTCCTCTTTTT
CACCCAACAAGCTGCCGTTGTCAGCCCTCCCAGCCCAAGCCCAAGAAGAC
GATGGGGCAATCCAGCAACTGTCAAGCAGCAGCATGGGCTCCAGTACGGC
CATCGGCATCAGCAAAATCATCCCCGTCACCATAATTTCGGGCTTCCTGG
GCGCAGgtacgtgtttgcctgcgagcgcattacctcgacacaactcttcc
tcaacctccccacgtcctgctcacacaaacagGGAAGACGACCTTGCTCA
ATTACATCCTGACCCAACCCCACGGGAAGCGAATCGCCGTAATTGAAAAC
GAGTTCGGGCAAGGCCTGGGTATCGAGAGCGCTATTGCCAAAGACGGTGC
GGATGGGAGTAGTCTCGAAGGGTTTTTCGAGCTGGCCAACGGGTGTATTT
GCTGCTCCGTGAAGAGCGACCTGTTGGCCACACTCGAGATTCTGGTGCAA
CGCAAGTCTCAATTCGACTACGTATTAATTGAGACGAGTGGATTAGCGGA
CCCCGGGCCGGTTGCGAGCTGCTTGTGGGTGGACGAGGAGCTGGAGAGTC
AGTTGAGGTTGGATGGGATTGTTACGGTGGTGGACGCCAAGCATATTGGG
CGGCACCTGCGTCGGCGACAGCAGCAACAGCAGCAAGGATTGGCGGGGGA
GCAAAAGCAAGAGCAGGATTCGACTGAAAATGGGAAGCAGGGCCAAAAGT
GGATATCGCCGAGTCAAGGAGCGGCACTAAAGAGTGAGGAGGGCAACACA
CAGCACGAGCCCTTCCTCCCTCCCTCCTCCACAACCCTAACAGGAAAAAC
CAACTGCCACCGGGAAGAGGCTTATCAGCAAATCTGCGTTGCTGACCGAA
TATTGCTTAATAAAACAGATCTTGTCACTGAGGCTGATTTATCAAAGCTA
GAGGCGGAGCTGAGGGGGTTAAACGGAATGGCACGCATACAACGAACGAA
TTTCTCGAAGATCGACCTGGACTTTGTATTAGGGTTGGATTGTTATGGAG
CCAGGAAGAAGGATGATGTTTCCTTGCCTTTCTTGAACGTTTGCGGCGCA
GAACATGTTCATGGTGGGAATGAGGAGGGAAGGAGGGACGACGAAGTAAG
AACGGTGGCGTGGGTGGAGGGGGTGGAGGTGAAGGTGGAGGCGGTCAAGC
AGTGGTTGGCTGAGCTGTTGTGGAGGGATGATGATAAGGAGGTGGATGCG
AAGCAGCAGCAGCAGCAAGAACGACAACAGCAGCAGCATATCTACCGGAT
GAAGGGTACCTTGGCGGTGGCGGGCTCGGAGGTGTTGCACATTTTGCAGG
CTGTCCATGAGACTTTTGAACTGGAGCCGAGCCAGACGCTTGTTGGTGAG
GGGGATAAAGGGGAGGGAGGGGAGGAGAGGAGAGGGGGAAAGGAGTGTCG
CTTGGTGGTAATTGGCAAGGGACTAGATGAAGGGCACTTGAGAGCTGGCT
TTTTGGCGACGGCTGTTTCAGCTACACGGTGAAAAAAATATGTGGGGAAA
CATCCGTCATTTACTTGAAAGAAACGAATTAAGACTCTAGTCGGCTACTT
TAGGGGGGTCTTCTTCCTTCTTCCGGTCTTTCTCCTGCTTCTTGCCGCAT
TGTCGCCTGTTTCTTTCGATACTTGCGCTTCGCCTCTCTCTCCCTTCTTT
TTGTTTTTGCCTCTTCACCGAGGCAATCCTTTTTCCTCGGTCTCCAACGT
CTCCCTTCCTTGGTGTGTTTCCCCTCATACTCTCAAGTCTCGCTCACTCC
TCTTGCCCCCTCTTCTTTTTGAATCTCTCTCATCTCATTTTTTGGTTTAA
GTTTGATTTTAACATCGGTACGCATCCTGTTCTCTTGCCCTTGATTCCTC
CTTCCTACTTATCTTTTGTCATCTTCTCTCATACTCTTTGATTTCAAGTT
TTTCGACAGCACTATTTATATATATATGTTTGTGTACGTGTATGTATGTG
TGTGTAAATCATCCCCTATCACCAACTTCTCATTCCCTTTCCTTCTCTGT
ATTTCTCTCTCTTCCGTCTTCACACATACCCTCGGATTTCTCGATAATCC
CTCCTTCTCTCTCTCCTTGCGACCTTCCCTCCGATTCTCCCCCCTAACGG
ATTTTGATCCCCCTTTTGAACAATACCAGTAAGACAAGCATCGTCGCCAC
CGACAAGGCCGTGCTCAGCACCTCACTCTTCCACCATGGCTGCGCCGCGT
CCTCTGCCCTGCCCCCCTCCCCCCTCGCGGACCCTACACCCGCCACACCA
CCACCACCACCAGCCTCCGAAGCCTCTGCAACTGCCTGACGGTTCCTCCT
CCGCCGCCGCGTCGCCCCTGCCCCACTTGACCCTCCCAGTCCGAACAGCA
GATATCCCAAACCCGCAAACAGGTTCTGGCTTCCCGTCGCCGCTGTGGCT
GCTGCTGCTGCTTCTTCCTCTTCCCGATCCTGCCTCTCGAGCGCCCGGCG
TATATGTGCCAGCGTGCGACGACGATAGAATGAGCACTGCTCATCCCACA
GATTCGAAGCTCGAACATACTTCTCAATCATGGCGTCATACTGCCTCATG
GGAATGGTCGTCCCACACGGCTTCTGACACGTGGGACACCTTCCCCCTCC
CTCCCTGCCTCCCTCCCTCCCCAACCACTGTTCAATACACTCCCCACAAA
ACGTATGCCCCTCCCCACAGTCCACCGCTTTGCACTCCACCATGTACTCA
CAGCATATCACGCACTCCAGGTCCAGATTCCGCAAGTAACGCCTCACCTG
CTCATCTGGCGTCTGGGCGAATAACCTCTGAGCGATGACATCGTCGTCAT
CATCCCCCCTCAGCAGCTCGTCCAGCACCTCGTCTGAGACCTCCCCCGCC
AAGCTATCTTTCCTCCGCATATTCCTCCCGACACTCACGAAACAATTCGA
CGGCACATTTTCCGCAAGATGTTCCTCTTCGAATTTTCCTTCTTCCCCAT
CCTCGTTATCCTCTTGCTGTGCCTGGGCTTGAGCCCATTCAGTACTCATT
GCCTCTAACAACTCAAACGACCCTGTCAAAGGGCTGCAACTGCTGCTGCC
AGTACTTCCCGAGGTCCCACTTCCCTCCTGCCTCCCTACCTCCTCCTCTT
CCTCCTCCTCCTC
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protein sequence of NO08G01960.1

>NO08G01960.1-protein ID=NO08G01960.1-protein|Name=NO08G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MTLAIFALVQTPCFYLCLFLSNFIAKSAALTLYVCCDVERVSWHYCALRI
FNLNAHELTLLCTTYTHSDMASKQCREQEQEEDDDDDDGPPELVALPLPS
SSFSPNKLPLSALPAQAQEDDGAIQQLSSSSMGSSTAIGISKIIPVTIIS
GFLGAGKTTLLNYILTQPHGKRIAVIENEFGQGLGIESAIAKDGADGSSL
EGFFELANGCICCSVKSDLLATLEILVQRKSQFDYVLIETSGLADPGPVA
SCLWVDEELESQLRLDGIVTVVDAKHIGRHLRRRQQQQQQGLAGEQKQEQ
DSTENGKQGQKWISPSQGAALKSEEGNTQHEPFLPPSSTTLTGKTNCHRE
EAYQQICVADRILLNKTDLVTEADLSKLEAELRGLNGMARIQRTNFSKID
LDFVLGLDCYGARKKDDVSLPFLNVCGAEHVHGGNEEGRRDDEVRTVAWV
EGVEVKVEAVKQWLAELLWRDDDKEVDAKQQQQQERQQQQHIYRMKGTLA
VAGSEVLHILQAVHETFELEPSQTLVGEGDKGEGGEERRGGKECRLVVIG
KGLDEGHLRAGFLATAVSATR*
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Synonyms
Publications