NO08G01320, NO08G01320 (gene) Nannochloropsis oceanica

Overview
NameNO08G01320
Unique NameNO08G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length650
Alignment locationchr8:398031..398680 +

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Properties
Property NameValue
DescriptionEndoplasmic reticulum, stress-associated Ramp4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:398031..398680 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
GO:0005783endoplasmic reticulum
Vocabulary: INTERPRO
TermDefinition
IPR010580ER_stress-assoc
Homology
BLAST of NO08G01320 vs. NCBI_GenBank
Match: EWM26759.1 (Endoplasmic reticulum, stress-associated Ramp4 [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 2.200e-20
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0
Query:    1 MATSRATRLRSEKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTA 63
            MATSRA RLRSEKFDKNVTKRGNVPVGKAAKREEA PVSP+LLGFF+FVVVGSA F II+TA
Sbjct:   66 MATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTA 127          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_004504408.1 (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cicer arietinum])

HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64
            M TSR   +R  EKF+KN+TKRG+VP     K+ +  PV P+LLGFF+FVV+GS++F II+TA+
Sbjct:    1 MTTSRRLAVRKVEKFEKNITKRGSVP-ETTVKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTAT 63          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_009396884.1 (PREDICTED: probable stress-associated endoplasmic reticulum protein [Musa acuminata subsp. malaccensis])

HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTA 63
            M TSR    R   KF KNVTKRG+VP  K AK+ +  PV P+LLGFFIFVVVGS++F II+TA
Sbjct:    1 MTTSRRLADRKIAKFQKNVTKRGSVP-EKTAKKGDNYPVGPILLGFFIFVVVGSSLFQIIRTA 62          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: GAQ88028.1 (Ribosome associated membrane protein RAMP4 [Klebsormidium nitens])

HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0
Query:    3 TSRATRLRSEKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTA 63
            ++R T+++S+KF KN+ KRG VP  K +K+E   PV P++LGFF+FVVVGSAI  II+ A
Sbjct:    4 STRHTKVKSDKFQKNILKRGEVP--KTSKKEAKYPVGPIVLGFFLFVVVGSAILQIIRQA 61          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: OIW18026.1 (hypothetical protein TanjilG_07610 [Lupinus angustifolius])

HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64
            M TSR    R   KFDKN+TKRG+VP    AK+ +  PV P+LLGFF+FVVVGS+IF II+TA+
Sbjct:    1 MTTSRRLADRKIVKFDKNITKRGSVP-ETTAKKGKDYPVGPILLGFFVFVVVGSSIFQIIRTAT 63          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: NP_001150243.1 (uncharacterized protein LOC100283873 [Zea mays] >ACG38351.1 membrane protein [Zea mays] >ACN29199.1 unknown [Zea mays] >ONM24737.1 Ribosome associated membrane protein RAMP4 [Zea mays])

HSP 1 Score: 65.5 bits (158), Expect = 7.300e-8
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64
            M TSR    R   +F+KN+TKRG+VP  + AK+    PV P+LLGFF+FVVVGS++F II+TAS
Sbjct:    1 MTTSRRLADRKISRFEKNITKRGSVP--ETAKKANDYPVGPILLGFFVFVVVGSSLFQIIKTAS 62          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_009372267.1 (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Pyrus x bretschneideri])

HSP 1 Score: 65.5 bits (158), Expect = 7.300e-8
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64
            M TSR    R  EKF+KN+TKRG VP    AK+ +  PV P+LLGFFIFVV+GS++F II+TA+
Sbjct:    1 MTTSRRLADRKVEKFEKNITKRGAVP-ETTAKKAKDYPVGPILLGFFIFVVIGSSLFQIIRTAT 63          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_007043980.1 (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Theobroma cacao] >EOX99811.1 Ribosome associated membrane protein RAMP4 [Theobroma cacao] >PON54981.1 Stress-associated endoplasmic reticulum protein [Trema orientalis])

HSP 1 Score: 65.1 bits (157), Expect = 9.600e-8
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64
            M TSR    R  EKF+KN+TKRG VP     K+ +  PV PLLLGFFIFVV+GS++F II+TA+
Sbjct:    1 MTTSRRLADRKVEKFEKNITKRGTVP-ETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRTAT 63          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: PIA51102.1 (hypothetical protein AQUCO_01100138v1 [Aquilegia coerulea])

HSP 1 Score: 65.1 bits (157), Expect = 9.600e-8
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64
            M TSR    R  EKFDKN+TKRG+VP     K+    PV PL+LGFF+FVV+GS++F II+TA+
Sbjct:    1 MTTSRRLADRKIEKFDKNITKRGSVP-ETTTKKGNDYPVGPLVLGFFVFVVIGSSLFQIIRTAT 63          
BLAST of NO08G01320 vs. NCBI_GenBank
Match: PON50686.1 (Stress-associated endoplasmic reticulum protein [Parasponia andersonii])

HSP 1 Score: 65.1 bits (157), Expect = 9.600e-8
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64
            M TSR    R  EKF+KN+TKRG V +   AK+ +  PV PLLLGFFIFVV+GS++F II+TA+
Sbjct:    1 MTTSRRLADRKVEKFEKNITKRGTV-LETTAKKSKDYPVGPLLLGFFIFVVIGSSLFQIIRTAA 63          
The following BLAST results are available for this feature:
BLAST of NO08G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26759.12.200e-2088.71Endoplasmic reticulum, stress-associated Ramp4 [Na... [more]
XP_004504408.15.600e-854.69PREDICTED: stress-associated endoplasmic reticulum... [more]
XP_009396884.15.600e-861.90PREDICTED: probable stress-associated endoplasmic ... [more]
GAQ88028.15.600e-855.00Ribosome associated membrane protein RAMP4 [Klebso... [more]
OIW18026.15.600e-859.38hypothetical protein TanjilG_07610 [Lupinus angust... [more]
NP_001150243.17.300e-856.25uncharacterized protein LOC100283873 [Zea mays] >A... [more]
XP_009372267.17.300e-857.81PREDICTED: stress-associated endoplasmic reticulum... [more]
XP_007043980.19.600e-857.81PREDICTED: stress-associated endoplasmic reticulum... [more]
PIA51102.19.600e-856.25hypothetical protein AQUCO_01100138v1 [Aquilegia c... [more]
PON50686.19.600e-857.81Stress-associated endoplasmic reticulum protein [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008922NSK008922Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01320.1NO08G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582185gene_3459Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g36gene3922Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01320.1NO08G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01320 ID=NO08G01320|Name=NO08G01320|organism=Nannochloropsis oceanica|type=gene|length=650bp
ATGgtatgtgccttgtgtttacttgtgtgtctttggcattcgctaggctt
tctctttcaaagtcctgcgctcttgcctactcgatctgcctgccacacga
cgcaaaacgatgctcatcactctgccaccatactcttcctaccgacaaca
acagGCCACCAGCCGCGCGACCCGTCTCCGCTCCGAGAAATTTGACAAAA
ACGTGACCAAGAGAGGGAATGTACCCGTGGGAAAGGCCGCGgtacgtctt
gtcgagtgttgaatatagtggacgggtcaggtagacgtggagtatggtgc
tgacataacttgcccgttcacgcatcaccagttattcatcatgtttgttg
tcatcgtctgataccctccgcgtctacggactggctcattgaacttctat
caaatgttcatgtcctacacctcgccataccttgaatgtcctctggttct
gcatcatatttattttcttgcattctggctctattcattcgcttcacaac
tacccctcatttatcgcttttctttcacaaacaacatagAAACGCGAGGA
GGCCGCCCCCGTGAGTCCATTGCTCCTTGGCTTCTTTATCTTTGTGGTGG
TGGGTTCAGCTATCTTTTCTATCATCCAGACAGCTTCGAGGCCTCTTTAA
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protein sequence of NO08G01320.1

>NO08G01320.1-protein ID=NO08G01320.1-protein|Name=NO08G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MATSRATRLRSEKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVV
VGSAIFSIIQTASRPL*
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Synonyms
Publications