NO08G00020, NO08G00020 (gene) Nannochloropsis oceanica

Overview
NameNO08G00020
Unique NameNO08G00020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5437
Alignment locationchr8:4855..10291 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNA-processing protein, HAT helix
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:4855..10291 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0030515snoRNA binding
GO:0030515snoRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006396RNA processing
GO:0006396RNA processing
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013949U3_snoRNA_assoc-6
IPR003107HAT
Homology
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: XP_022799163.1 (U3 small nucleolar RNA-associated protein 6 homolog [Stylophora pistillata])

HSP 1 Score: 197.2 bits (500), Expect = 1.900e-46
Identity = 108/288 (37.50%), Postives = 172/288 (59.72%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRA-VLAGAVPRMVYLSAIKARPRDLDMRLAFVE 288
            MA+ V Q L+ MLP LE+L+  G+F+++E+R I  KRR++E+ L++R  +KSDFLRY+ +E+NL+ L++ RK++ G+ ++  ++HA  + +H +F+ AL+KF GD++LW+QY+++C    S K   +  A+ LQ  P    LWI AA +EF E+ + P +R L+QRGLR+N   S  LW +YF++E+L+V K+  RR  LG+     +E+G                                    DD +   V A  LAG VP +VY  AI+A P D++ R++F+E
Sbjct:    1 MAEYVQQNLEGMLPELEELERLGVFSSDEIRTIVRKRREYEYRLQKRIVQKSDFLRYMQYEINLDMLKKKRKSRLGIRRNLQAEHAAMKKIHTLFQNALKKFVGDIKLWIQYIEFCKHMGSLKILGKVFAKLLQYHPDKPNLWIMAAKWEFEENKNIPNSRSLLQRGLRVN-SSSQQLWLEYFRMELLHVEKIHNRRKVLGM----SREEG------------------------------------DDAQDEEVTAEFLAGKVPEIVYKKAIEAVPDDINFRVSFIE 247
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: KJE94924.1 (hypothetical protein CAOG_005466 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 196.8 bits (499), Expect = 2.500e-46
Identity = 102/204 (50.00%), Postives = 144/204 (70.59%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTV-SDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIE 204
            MA+AV Q L++M+P LEDL+ +GL T+ EV+ +  KR  FE+ LRRR  +K D+LRYI  EL LEELR+ RK + G++++   SD A  + VHFIF +ALRKF+ D++LWL+Y D+C  TSS K   +A+A AL+  P+   LW+ AA  EF ++S+  AARVL+QRGLR+N   S LLW +YF+LE+L+  K+R R+  L +E
Sbjct:    1 MAEAVQQQLEQMVPELEDLERKGLLTSAEVKMVVKKRTQFEYALRRRITQKVDYLRYIAFELGLEELRKQRKVRLGITRTNAPSDFAIVRRVHFIFHKALRKFRSDMQLWLEYFDFCRKTSSSKLLGKAIAMALRSHPQQERLWVMAAKHEFDDNSNVTAARVLLQRGLRMN-DASKLLWREYFRLELLFAEKIRARQAILMME 203
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: PKC11746.1 (hypothetical protein RhiirA5_466500 [Rhizophagus irregularis] >PKY29366.1 hypothetical protein RhiirB3_483419 [Rhizophagus irregularis])

HSP 1 Score: 193.7 bits (491), Expect = 2.100e-45
Identity = 121/295 (41.02%), Postives = 184/295 (62.37%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLE--GEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEEL 293
            MA+ V   L++M+P LEDL+ + +FT EE+++I  KR +FE+ L+RR A+  DFL+YI +E+NL+ L++ RKN+ G+  + T+SD++ K+ ++ IF+RA+ KF GD++LW+QY++Y  +   HK  S+     LQL P     WI A+ +E+  +++  +ARV +QRGLRLN  +S  LW QYFKLE++YV K++ RR  LGI      E  XXXXXXXXXXXX     +E   +              ++ P       +L G + ++VY +AIKA P DL  R  F++  +EL
Sbjct:    1 MAETVQYYLEQMVPELEDLERKEIFTKEEIKSIVKKRTNFEYALKRRPAQIIDFLKYIEYEMNLDLLKKKRKNRLGIKGRVTISDYSIKRRIYHIFDRAIIKFAGDVKLWVQYIEYAKNEGDHKMLSKIFGSVLQLHPTNPMFWIMASKYEYEINTNIMSARVFLQRGLRLN-HDSHQLWHQYFKLELIYVEKIKARRKILGISNNKDDEXXXXXXXXXXXXXXDSQNFIEITADDDFLKTKKLELKGLDNLPNLDDDNLLLRGELAKVVYSNAIKAIPNDLSFRKEFIDVCQEL 294
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: PKC59348.1 (hypothetical protein RhiirA1_493130 [Rhizophagus irregularis])

HSP 1 Score: 193.7 bits (491), Expect = 2.100e-45
Identity = 121/295 (41.02%), Postives = 184/295 (62.37%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLE--GEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEEL 293
            MA+ V   L++M+P LEDL+ + +FT EE+++I  KR +FE+ L+RR A+  DFL+YI +E+NL+ L++ RKN+ G+  + T+SD++ K+ ++ IF+RA+ KF GD++LW+QY++Y  +   HK  S+     LQL P     WI A+ +E+  +++  +ARV +QRGLRLN  +S  LW QYFKLE++YV K++ RR  LGI      E  XXXXXXXXXXXX     +E   +              ++ P       +L G + ++VY +AIKA P DL  R  F++  +EL
Sbjct:    1 MAETVQYYLEQMVPELEDLERKEIFTKEEIKSIVKKRTNFEYALKRRPAQIIDFLKYIEYEMNLDLLKKKRKNRLGIKGRVTISDYSIKRRIYHIFDRAIIKFAGDVKLWVQYIEYAKNEGDHKMLSKIFGSVLQLHPTNPMFWIMASKYEYEINTNIMSARVFLQRGLRLN-HDSHQLWHQYFKLELIYVEKIKARRKILGISNNKDDEXXXXXXXXXXXXXXDSQNFIEITADDDFLKTKKLELKGLDNLPNLDDHNLLLRGELAKVVYSNAIKAIPNDLSFRKEFIDVCQEL 294
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: EXX77452.1 (Utp6p [Rhizophagus irregularis DAOM 197198w] >POG79649.1 U3 small nucleolar RNA-associated protein 6-domain-containing protein [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 192.2 bits (487), Expect = 6.100e-45
Identity = 116/294 (39.46%), Postives = 182/294 (61.90%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGI-EEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEEL 293
            MA+ V   L++M+P LEDL+ + +FT EE+++I  KR +FE+ L+RR A+  DFL+YI +E+NL+ L++ RKN+ G+  + T+SD++ K+ ++ IF+RA+ KF GD++LW+QY++Y  +   HK  S+     LQL P     WI A+ +E+  +++  +ARV +QRGLRLN  +S  LW QYFKLE++YV K++ RR  LGI  +  +    XXXXXXXXX    +   +  +              ++ P       +L G + ++VY +AIKA P DL  R  F++  +EL
Sbjct:    1 MAETVQYYLEQMVPELEDLERKEIFTKEEIKSIVKKRTNFEYALKRRPAQIIDFLKYIEYEMNLDLLKKKRKNRLGIKGRVTISDYSIKRRIYHIFDRAIIKFAGDVKLWVQYIEYAKNEGDHKMLSKIFGSVLQLHPTNPMFWIMASKYEYEINTNIMSARVFLQRGLRLN-HDSHQLWHQYFKLELIYVEKIKARRKILGISNKDDEXXXXXXXXXXXXXKDSQNFIEITADDDFLKTKKLELKGLDNLPNLDDDNLLLRGELAKVVYSNAIKAIPNDLSFRKEFIDVCQEL 293
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: EXX77453.1 (Utp6p [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 192.2 bits (487), Expect = 6.100e-45
Identity = 116/294 (39.46%), Postives = 182/294 (61.90%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGI-EEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEEL 293
            MA+ V   L++M+P LEDL+ + +FT EE+++I  KR +FE+ L+RR A+  DFL+YI +E+NL+ L++ RKN+ G+  + T+SD++ K+ ++ IF+RA+ KF GD++LW+QY++Y  +   HK  S+     LQL P     WI A+ +E+  +++  +ARV +QRGLRLN  +S  LW QYFKLE++YV K++ RR  LGI  +  +    XXXXXXXXX    +   +  +              ++ P       +L G + ++VY +AIKA P DL  R  F++  +EL
Sbjct:    1 MAETVQYYLEQMVPELEDLERKEIFTKEEIKSIVKKRTNFEYALKRRPAQIIDFLKYIEYEMNLDLLKKKRKNRLGIKGRVTISDYSIKRRIYHIFDRAIIKFAGDVKLWVQYIEYAKNEGDHKMLSKIFGSVLQLHPTNPMFWIMASKYEYEINTNIMSARVFLQRGLRLN-HDSHQLWHQYFKLELIYVEKIKARRKILGISNKDDEXXXXXXXXXXXXXKDSQNFIEITADDDFLKTKKLELKGLDNLPNLDDDNLLLRGELAKVVYSNAIKAIPNDLSFRKEFIDVCQEL 293
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: GBC34909.1 (U3 small nucleolar RNA-associated protein 6 [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 192.2 bits (487), Expect = 6.100e-45
Identity = 116/294 (39.46%), Postives = 182/294 (61.90%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGI-EEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEEL 293
            MA+ V   L++M+P LEDL+ + +FT EE+++I  KR +FE+ L+RR A+  DFL+YI +E+NL+ L++ RKN+ G+  + T+SD++ K+ ++ IF+RA+ KF GD++LW+QY++Y  +   HK  S+     LQL P     WI A+ +E+  +++  +ARV +QRGLRLN  +S  LW QYFKLE++YV K++ RR  LGI  +  +    XXXXXXXXX    +   +  +              ++ P       +L G + ++VY +AIKA P DL  R  F++  +EL
Sbjct:    1 MAETVQYYLEQMVPELEDLERKEIFTKEEIKSIVKKRTNFEYALKRRPAQIIDFLKYIEYEMNLDLLKKKRKNRLGIKGRVTISDYSIKRRIYHIFDRAIIKFAGDVKLWVQYIEYAKNEGDHKMLSKIFGSVLQLHPTNPMFWIMASKYEYEINTNIMSARVFLQRGLRLN-HDSHQLWHQYFKLELIYVEKIKARRKILGISNKDDEXXXXXXXXXXXXXKDSQNFIEITADDDFLKTKKLELKGLDNLPNLDDDNLLLRGELAKVVYSNAIKAIPNDLSFRKEFIDVCQEL 293
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: PKK64930.1 (hypothetical protein RhiirC2_715914 [Rhizophagus irregularis])

HSP 1 Score: 191.4 bits (485), Expect = 1.000e-44
Identity = 119/295 (40.34%), Postives = 182/295 (61.69%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLE--GEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEEL 293
            MA+ V   L++M+P LEDL+ + +FT EE+++I  KR +FE+ L+RR A+  DFL+YI +E+NL+ L++ RKN+ G+  + T+SD++ K+ ++ IF+RA+ KF GD++LW+QY++Y  +   HK  S+     LQL P     WI A+ +E+  +++  +ARV +QRGLRLN  +S  LW QYFKLE++YV K++ RR  LGI         XXXXXXXXXXX      +E   +              ++ P       +L G + ++VY +AIKA P DL  R  F++  +EL
Sbjct:    1 MAETVQYYLEQMVPELEDLERKEIFTKEEIKSIVKKRTNFEYALKRRPAQIIDFLKYIEYEMNLDLLKKKRKNRLGIKGRVTISDYSIKRRIYHIFDRAIIKFAGDVKLWVQYIEYAKNEGDHKMLSKIFGSVLQLHPTNPMFWIMASKYEYEINTNIMSARVFLQRGLRLN-HDSHQLWHQYFKLELIYVEKIKARRKILGISNNKDDXXXXXXXXXXXXXXKDSQNFIEITADDDFLKTKKLELKGLDNLPNLDDDNLLLRGELAKVVYSNAIKAIPNDLSFRKEFIDVCQEL 294
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: PKY53487.1 (hypothetical protein RhiirA4_471727 [Rhizophagus irregularis])

HSP 1 Score: 191.4 bits (485), Expect = 1.000e-44
Identity = 119/295 (40.34%), Postives = 182/295 (61.69%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLE--GEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEEL 293
            MA+ V   L++M+P LEDL+ + +FT EE+++I  KR +FE+ L+RR A+  DFL+YI +E+NL+ L++ RKN+ G+  + T+SD++ K+ ++ IF+RA+ KF GD++LW+QY++Y  +   HK  S+     LQL P     WI A+ +E+  +++  +ARV +QRGLRLN  +S  LW QYFKLE++YV K++ RR  LGI         XXXXXXXXXXX      +E   +              ++ P       +L G + ++VY +AIKA P DL  R  F++  +EL
Sbjct:    1 MAETVQYYLEQMVPELEDLERKEIFTKEEIKSIVKKRTNFEYALKRRPAQIIDFLKYIEYEMNLDLLKKKRKNRLGIKGRVTISDYSIKRRIYHIFDRAIIKFAGDVKLWVQYIEYAKNEGDHKMLSKIFGSVLQLHPTNPMFWIMASKYEYEINTNIMSARVFLQRGLRLN-HDSHQLWHQYFKLELIYVEKIKARRKILGISNNKDDXXXXXXXXXXXXXXKDSQNFIEITADDDFLKTKKLELKGLDNLPNLDDDNLLLRGELAKVVYSNAIKAIPNDLSFRKEFIDVCQEL 294
[Close]
BLAST of NO08G00020 vs. NCBI_GenBank
Match: XP_013896810.1 (hypothetical protein MNEG_10171 [Monoraphidium neglectum] >KIY97790.1 hypothetical protein MNEG_10171 [Monoraphidium neglectum])

HSP 1 Score: 190.7 bits (483), Expect = 1.800e-44
Identity = 97/205 (47.32%), Postives = 147/205 (71.71%), Query Frame = 0 
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL--SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIE 204
            MAD V   +++M+P LED+Q +  F+ +E++ I  KR++FE+ L+R++A K DFL Y  +E  LE+LRR R+   GL  +K +++D+A  + VHFIFERA+RKF+ DL +W ++L++C +T S++  SR  ARALQL P   GLW  AA++EF E+++P AAR LMQ+GLR+  ++S  +W QY  +E++YV KLR RR ALG++
Sbjct:    1 MADTVRYLMEQMVPELEDMQKKSYFSKQEIKEIVRKRQEFEYKLKRKSALKEDFLSYAEYETKLEQLRRARRRGLGLEQAKQSLADYALVKRVHFIFERAVRKFKRDLGVWTRWLEFCRATRSNRRLSRVAARALQLHPNAPGLWTYAAAWEFEENANPGAARALMQQGLRM-CRDSRQMWLQYLDMELMYVQKLRTRRKALGLD 204
The following BLAST results are available for this feature:
BLAST of NO08G00020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022799163.11.900e-4637.50U3 small nucleolar RNA-associated protein 6 homolo... [more]
KJE94924.12.500e-4650.00hypothetical protein CAOG_005466 [Capsaspora owcza... [more]
PKC11746.12.100e-4541.02hypothetical protein RhiirA5_466500 [Rhizophagus i... [more]
PKC59348.12.100e-4541.02hypothetical protein RhiirA1_493130 [Rhizophagus i... [more]
EXX77452.16.100e-4539.46Utp6p [Rhizophagus irregularis DAOM 197198w] >POG7... [more]
EXX77453.16.100e-4539.46Utp6p [Rhizophagus irregularis DAOM 197198w][more]
GBC34909.16.100e-4539.46U3 small nucleolar RNA-associated protein 6 [Rhizo... [more]
PKK64930.11.000e-4440.34hypothetical protein RhiirC2_715914 [Rhizophagus i... [more]
PKY53487.11.000e-4440.34hypothetical protein RhiirA4_471727 [Rhizophagus i... [more]
XP_013896810.11.800e-4447.32hypothetical protein MNEG_10171 [Monoraphidium neg... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009075NSK009075Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00020.1NO08G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100045g10gene4053Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00020.1NO08G00020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00020 ID=NO08G00020|Name=NO08G00020|organism=Nannochloropsis oceanica|type=gene|length=5437bp
GCGGTAAGCAGGAGGTCACGATGAAACCGACGCTGGGCCGTTGCGCGGAG
GGTTTAAATTGCGAAATCGACACGGTGCGATTCAGGGGCAAATGTCAGGC
TTTTGAAGCGATTTGAAAGGTGTTAGTGCCAATGCACACATGAATGCATA
TAACATGATGAACAAGCTGAGTGGTGGAAAAAGTAGCAGGATCGGCCAAA
ATTAATGGGTTGTCCAGCGAGGAGGCTTGCTTGCACAACATGATGTTTTC
TCTGGCGCGCGAGCCGCAGCCCTGCGACGAAAGTCCAAAGGATGCTACCG
TCCAGGAAGCAGATCGCAAGGCTATTAAGTCTGTGTGCTCCAAGATTGTT
GAAGTAAATCAAAGCCGCTTCAAACTTATCCAAACATCAACCAAATCACA
CTCATGTTTCTATCGAGGAGACATTATATCGTCTCTATTGACCCGCTCTT
TTTTCTTTTTTCATGCCTTTCCTCTGACGCTTTTCGGTCAAGTCGTCGTG
GGACTTTTTGATCAAGGCGTCGTGGGACTGAGCTCCTCCAGGACTGGCCC
CAGGTGTGCTGTGAAAATGTGCGTGTATAAGGGGGGTTGAAGTAACCAGT
GAGAACTTCGCACAAGACGCCGTTTGATTTTCCTCCTGCTTCCCCCTTTG
CCCCTTGTTTTCTCTAAATCGACTTCCACCTTCCTGCTCAAATCCTAGAA
CCTCATTTGTCGACGACATACACTACTATTACCACTCTCCTGCCTCTCAT
TCCTGCACCATCCTTCGCGTACTCTTCCCTCTCCCTCTCTCCCCCATCTT
CTCCTCGTAACATCACGTACCGATCGCATCCGGCGCCGTCATGGACCGCC
GCTTTTCCTTGAACGCCTCCCGACTCGCTCGCCGGGCAATGAAAGAGGCC
GTGCCACACGCCCACAACACAGTGTCCCGCGCCTCGAGCCGTCTAGCCTC
GCACGAAGACGACGATGCCGTCTCTCCTCCTCCAGCCCCTTCCTCCCCTT
CCCCTCCACCGCTTTGTGCTTTCAAAACCAAGGCTGACCAATGCATCAAC
ACGCCCATGCTCCCCGCCAAAATATCCCCCAGCCCCCCTGACCGCCGCTT
GGATCCCTCCTCCCTCACCACCAAATACCGCTGCCCGTCCGCCACGATGT
CCTCCTTTCCCTTCAAGAGCACTGTCACCTTTCCCTTCTCTCCACTCAAT
GCCTGAGCCACCCTCATCACGTCCCTGGGTTGCGGGGCCTTGCGCGAGGG
GACAGCATCAGCTATCGAGGCGCCCTCGAGCCCTGCCTGCAGTCTGGCAA
ACTCAATCAGATTGGGCGTAACCACCACCCCGCCTACTTTTCCTCCTCCT
TCGCCTCCTTCGCCTCCTCCTGCAGATGGATAGTCGTGCAAAACGTCGGG
GGCGTGCGCAACGAGCCAGAGCCCGTCGGCGTCAATCACGACGGGCAAGG
CCTGGTGTTTGGCTTCGAGCAAAATGCGGTGCGTCGCCTCCATTACCAGA
GGGTCACGACCCAGCCCGGGCCCCACCACCAGCACGTGCAGCTTGGGGAA
AAATGACGTCACTTGCTCTACAAAGCGGGTCACAAGAGCTTCCTCTTCCT
CCTCTCTGCCTCTGCCGACAGTGCGGTTGAACAGCCGCAAGACTGAGCTT
CCTTTTCCTCCTCCTCCTTCCTCTGTGGCACCACCGGTCCTCCTTCCGAC
CCCCAGGGCCTTGGCAGAGTAGACCGACGTCACCATAAGCTCCGGACTAT
ACCCCTTGATAGGGCCTGCGGCTTCGTCTGCGGTGAAGATATAGCACAGG
TCGCCGCCCAACTTGAGGCTGGCCATGCCCGCGTAGAAGGGCGCACCGGT
AAAGTCTTGTGAGCCTCCTAGGATACCCACCTTCCCCATTTGTCCCTTAC
GGGCCGTGTCTGTTAATGGAGGGATCAGGCGTTTGATCATGTCCAAGTCG
GCTGCGGCGGTAGCGTGGTTGAGGCACGTGGACATAGTGGCCTCCGACGA
GGACGAGGACGAGGAAGCGGCAGCAAGAGGCATGGCAGCCGCAGACAAGC
CTTGACCAGTTGTTCCACCAGCACTTCCGCTGGCCTTGAAGGAGGAGGAG
CCGAAGAATGTGGTGAAGGCCGTGAGTGCCAAAGGTAGAAGGCGCAAGGG
GCCACCGCCGCGCTGCTTGAGGTGCTGGCGGCGAATGTGATAATAATGGT
GCTGCTGTTGGAGGAGAAAGGCAGGAGGAAGGCAGGAGGAGGGGGGGGCG
GGCATAGACTGGGCAAAAGTAACAAGCTGCAGGCTGGGTGCGTTCTGTTT
TTGGTGTGTTGTGATTGCTATGTGGGACGAGGTGTGAAGAGGGCACAAGG
TGGAACAGAACAAGCCATGATGATTGTCGTGCCTGGCTTGGCTTAGTTTG
GTGATACTCTTGTGCTCCGAACAATGCATGCATAATGCACCCACTTTTCT
TGTAAATACACGCCACTATTACATTCACGACTGATATAGTGCTTGTCATT
CAGGCTCGCGGTGCTGTCCGGGCCACGGAGGCTTGGAGTCCATCGAAATC
ACAGTCAAGCTTAGGCCAAGCATCCCCCTCATCCCTAATCTAGTTAAGCG
TAAGCCAGCAACACCATGGCTGATGCCGTCTACCAAGCATTGGACCGCAT
GCTCCCGGCCCTGGAAGACTTGCAGGTTCGGGGTCTTTTCACTGCGgtaa
gttttttgtggatacgattgattcactgactgattgattgattaattggt
tgattcttgcgtgatgagtggttgcgttcttacctccccacgctctctaa
gaaatccgcgcagatactttgcttccttctcatatcaaagccttgcctgt
caaccactgagccctcggcataagagaaaagaggctactttcttgaacgg
cggctatctgcccttgtatttgctccgccgagcaactttcaccaccatct
tctatctgcgcccccctccactccattcagccccgctaccccccacgccc
cctcatgcctcacaacaactacctctcaccaatttatacattctatccaa
tcccactaaatttcttctttatttccaattatacagGAGGAAGTCCGTGC
CATTGCTGCCAAACGGCGGGACTTTGAGTTCCTGCTGCGTCGCCGCACGG
CCCGCAAAAGCGATTTTTTGCGTTACATCACCCACGAGCTCAATCTCGAA
GAACTCCGGCGCCTGCGCAAGAATAAGGCCGGCTTGAGCAAGAGCACTGT
CAGCGACCACGCCGGAAAGCAGTTAGTCCACTTCATATTTGAACGAGCCC
TGCGCAAGTTCCAAGGCGACCTGGAGCTCTGGCTCCAATACCTGGATTAT
TGCTGCTCCACCTCCTCCCACAAAGCCCACTCCCGCGCCCTCGCTCGAGC
ACTCCAACTCTTCCCCCGTACGGCGGGACTCTGGATACGTGCTGCCTCCT
TTGAATTTTTTGAGCATTCCTCCCCGCCCGCCGCGCGTGTCTTGATGCAG
CGCGGGTTGCGGCTGAACGGGCAGGAATCGGCCTTGCTGTGGACCCAGTA
CTTCAAGCTGGAGGTACTTTACGTCAATAAATTGAGAGGGAGGCGGGTTG
CATTGGGCATAGAGGAGGGTACGAAGAAGGAGCAGGGAGAGGGGGGGGGG
GAAGGAGAGGAAGAGAGCGAAGGGATCCATGTCCCACGCTTGGAGGGTGA
GGACGATGACACTGAGGAGGAAGCGAAGGAGGAAAAAGGGAACGAAGATG
ACCCACGCGCTCGAAGTGTAAGGGCTGTGTTAGCGGGAGCGGTTCCTCGG
ATGGTGTACTTGTCGGCCATCAAAGCCCGGCCACGGGACTTGGATATGCG
ACTTGCTTTCGTTGAGACCCTTGAAGAGCTGGGGGGACAACAGCAACAGA
GTGAGACAGAGGGGGAGGGGGGGAGGGAGGAAAGGAGCGAGGGGGCCTTT
GAAGATTTAGTGCAAGAGATTTTGGGAGGTATTGAGGAGGCATTCGGGGT
GGCGGAGGCGGCCTGGGCCCGCGCGAAGCATGCCCTTACTAGGCGTGGAG
GGCAGGTGGGAGGGGAGGTGGAAGTGAGGGCGACAACGAACAAAAGGAAG
ACGAATGTGCGGCGCAACAGCAGCAGCAGCAGCAGCAAGAAGCGGCGGTA
TTCATCAAGCTTGACAGCGACTTGGGTTGACGACGAGAAGGCGGTGACGG
GCTGGCGGGAGGGCCTTGAGGGCGGGGCCCGTGAGTGCATGGCCGTGCTG
GACACAACACTGGCTGCCGCTGCCGACCTGGACCGAAACGCGGAGGAGGA
CAAAAATGGGAAGAGGTACGACCTATTGAACAAGATATGGCAGTATTATT
TGCGTGGACTGCTGGAGCTGTTGCACGCCCCTGGCTCTGTCCTTCGCGCC
GCGTTTGCCCGGAGGGAGGTAGCGTTGAGCGGGGAGGGAGGAAGGGAGGG
AGAGGTGGCAGGCGGCCTTACCCTCGAGCCAGGAATGTACTTGATATGGG
CCTCGCTGTGGGTGGCCCCTTCGGTGCTTTCATCTCCGCTGGCACACCAC
GTTGAGGAGGATGGGAAGGAGGAAGGGAACGTGCAGGAAGCTCGACGTGT
TTTGGACAAGGCCGTAAAGGCGCACCCTTTGCATGCCCGCCTTTGGGAGG
CGAGGCTGCGGGCCGAGGCATGGGGAGAAGGGGGGAGGGTGGGCGACGTG
TTCACCAAAGCCCGACAGGCATTGGGCCCTACAGCAGGGATCGACGAACT
GGGGGAGGGAAGAGGGAGCGAGGAGGAGGAAGGGGAGGCGCGGAGAATAG
CGGTGGCTGGGTGTTGGTGGGTCTATTTGGACTGGCTGATGCTGGTTGGC
GGGGAGGGTAAGAGAAGGAAGAGTGAGAATACCACCAGTGGTAGCAGTGA
GAGTGACAGCGATTCGGAGGCGGAGGAAGGAGAGAAAGACGGGGTGGAGT
GGCAGGAAGAGGGGAAAAGGGCGGTATCGCCCGAGGTCGTTAAGGCGCTT
GAGCACGCCTTGGTGAGCACGCGGGGTCCGGGTCGTGTGGCTCTCTGTCG
GTTGTGGCATCGGTGCTTGGGTCGAAGAGGGTTGCAACAAGCCATGACTC
ACATGGGGGATGGGAGGGCGGAGGAGCGGGAAGATATGGCAGCACTGTGT
TTGGAAGCCTTAAACGACGGGAAGGAGGAAGCGGGGCTCACGGGGGCGTG
GTTCGAGGCAGCTCTAGCAGTGTGTGGGAAGGCGGAGACAGAGGAGGCAG
CGGCCCTGTGGGAGGCGTATGAGATTTTTGAAAGAGGGCAAGGTCGACAC
CAGGCGGCTAACAACGTGAGGTGGCGGCGGGGAAAGGCGACAGGAGAGAA
GTAACGAGGGCATGAGGGACAACAAATGATTGTCGTTAGTATGTACATGA
ATGGAGCTAGAACGGCGATGTGCCGCAACGAATTGAG
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protein sequence of NO08G00020.1

>NO08G00020.1-protein ID=NO08G00020.1-protein|Name=NO08G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=783bp
MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTAR
KSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALR
KFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFE
FFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVAL
GIEEGTKKEQGEGGGEGEEESEGIHVPRLEGEDDDTEEEAKEEKGNEDDP
RARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEELGGQQQQSE
TEGEGGREERSEGAFEDLVQEILGGIEEAFGVAEAAWARAKHALTRRGGQ
VGGEVEVRATTNKRKTNVRRNSSSSSSKKRRYSSSLTATWVDDEKAVTGW
REGLEGGARECMAVLDTTLAAAADLDRNAEEDKNGKRYDLLNKIWQYYLR
GLLELLHAPGSVLRAAFARREVALSGEGGREGEVAGGLTLEPGMYLIWAS
LWVAPSVLSSPLAHHVEEDGKEEGNVQEARRVLDKAVKAHPLHARLWEAR
LRAEAWGEGGRVGDVFTKARQALGPTAGIDELGEGRGSEEEEGEARRIAV
AGCWWVYLDWLMLVGGEGKRRKSENTTSGSSESDSDSEAEEGEKDGVEWQ
EEGKRAVSPEVVKALEHALVSTRGPGRVALCRLWHRCLGRRGLQQAMTHM
GDGRAEEREDMAALCLEALNDGKEEAGLTGAWFEAALAVCGKAETEEAAA
LWEAYEIFERGQGRHQAANNVRWRRGKATGEK*
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Synonyms
Publications