NO07G04530, NO07G04530 (gene) Nannochloropsis oceanica

Overview
NameNO07G04530
Unique NameNO07G04530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4589
Alignment locationchr7:1270540..1275128 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytoplasmic dynein 1 intermediate chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1270540..1275128 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR007481SspB
IPR001680WD40_repeat
Homology
BLAST of NO07G04530 vs. NCBI_GenBank
Match: CBJ25912.1 (putative: similar to cytoplasmic dynein intermediate chain [Ectocarpus siliculosus])

HSP 1 Score: 194.9 bits (494), Expect = 8.800e-46
Identity = 141/444 (31.76%), Postives = 203/444 (45.72%), Query Frame = 0
Query:  297 PAAKNAGSVKPSMTTEEKEAELSRPELVSFLSRASLLVERAVGQDESYNIFVEYCGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGARVGGEM---EGR----RAVMDLHWSPHFPELFLAAYSGINDGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEMVVGGESGHMY---LHFPXXXXXXXXXXXXXXXXXXXXRGAMPRQWEGHNGLITGLSQHPSSLXXXXXXXXXXXXXXXALGPLVLSSSVDWTIKLW 731
            P    A + KP ++ +EK+  +       FL R+S ++ERA+G+ E+ ++ ++Y G                                                  +G R+   M   E R    R++ DL WSPH PEL LA+Y+    G      S+ +                     + DGLVLVWS+A+  RPE + +  SPVLT+RFHP D H++ GGTYSGQVV WDTRAK+LPVQR+PLS  GHT+PVY L + G+ ++    +LL+AS +GRV  W+  QLSQPL+  ++ H  G P                        V+I++  + + G  +  +VVG ESG +Y   LHF                        +  ++ GH GL+T +  +PS+                 L  LVLSSSVDWT +LW
Sbjct:  259 PMTPPATAAKP-LSVDEKKEIVQTDHFQDFLRRSSRVLERALGEKEALDVLLDYAGD-----------------------------------------EGDSGRGDQGQRLNEAMTLHEDRWCQERSLTDLQWSPHHPELVLASYTARGHGLDATSSSALH--------------------TDADGLVLVWSMAMQHRPEYQLSSQSPVLTARFHPFDTHVIIGGTYSGQVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNA---PSLLTASTEGRVSTWNPSQLSQPLQDINLTH-AGKP------------------------VTISSMAVAQ-GDEQKNIVVGSESGGIYTTPLHF--------------------RNSGVVEEYSGHYGLVTSVDANPSA--------------SKPLRGLVLSSSVDWTTRLW 577          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: XP_004359310.1 (cytoplasmic dynein intermediate chain [Cavenderia fasciculata] >EGG21460.1 cytoplasmic dynein intermediate chain [Cavenderia fasciculata])

HSP 1 Score: 160.2 bits (404), Expect = 2.400e-35
Identity = 106/331 (32.02%), Postives = 148/331 (44.71%), Query Frame = 0
Query:  404 GARVGGEMEGRRAVMDLHWSPHFPELFLAAYSGINDGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSL-ALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEM---VVGGESGHMYLHFPXXXXXXXXXXXXXXXXXXXXRGAMPRQWEGHNGLITGLSQHPSSLXXXXXXXXXXXXXXXALGPLVLSSSVDWTIKLW 731
            G  V       R+V D++WSP  PEL + +YS    GS D                              DG+VLVWS+     +PE  F C SPV+T+ F    P L+ GGTYSGQ+V WDTR+K+ PVQR+PLS+ GHTHPVY++ V GS ++    TL+S S DG++C W++  LSQP+E   +   +                          ++++T+   Q     E EM    VG E G +Y                        +  +  +++GH+G IT +  HPS                   G L LSSS DWT +LW
Sbjct:  257 GTLVDERWSKHRSVTDINWSPKHPELVVTSYSANETGSHD-----------------------------PDGVVLVWSVNNFYQKPEYVFNCQSPVMTTFFSRFHPTLIVGGTYSGQIVVWDTRSKSTPVQRTPLSSVGHTHPVYSMSVVGSTNA---NTLISVSTDGKLCSWNLDNLSQPVETLDLNAKNN----------------TSSTVSATSSIAVTSLVFQ-----ETEMNAFFVGSEDGSIY-----------------QAHRHGSKTGISDRYKGHHGPITSIDFHPS-------------RGSIDFGNLFLSSSTDWTTRLW 504          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: GAY01722.1 (Hypothetical protein PINS_009559, partial [Pythium insidiosum])

HSP 1 Score: 159.8 bits (403), Expect = 3.100e-35
Identity = 105/349 (30.09%), Postives = 156/349 (44.70%), Query Frame = 0
Query:  303 GSVKPSMTTEEKEAELSRPELVSFLSRASLLVERAVGQDESYNIFVEYCGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGARVGGEMEGRRAVMDLHWSPHFPELFLAAYSG---INDGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEMVVGGESGHMY 649
            G V   ++ EEK+  +    L  F+ +AS ++ERA+     Y+I ++Y                                                           +    RAV D+  SP +PEL L +Y+    + +   ++ P +++                   +   DG+VL+WS ALP+RPE RF C S V ++ F+P D +L+FGGTYSGQ+V WDTRAK+ PVQ++ LS+  HTHPVY+L V GS  S     L+SAS DGRVC WD+ QL QPLE+  +R                               ++T F + R  K   ++ +G E+G +Y
Sbjct:  173 GDVPMGLSDEEKKKIMQSESLEEFILKASRVIERALTTSSKYDIMIDYGATVEDDQLPDDVAQTLKPLFTFKDE---------------------------------QWTRYRAVTDVDVSPFYPELLLVSYTARDFLEEEERELGPRNASNAALSASSSSALLADL---SRTTDGVVLLWSTALPTRPEYRFTCHSQVTSACFNPFDRNLIFGGTYSGQIVVWDTRAKSAPVQKTSLSSGSHTHPVYSLAVVGSKSSYH---LVSASTDGRVCVWDVDQLQQPLEMLDLR---------IAVSIVSNYSSVNIATDKKMEAAVTTFAIHR--KENKQLYIGTEAGKLY 471          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: ETI37794.1 (hypothetical protein F443_16342 [Phytophthora parasitica P1569] >ETK78002.1 hypothetical protein L915_15893 [Phytophthora parasitica] >ETL31435.1 hypothetical protein L916_15789 [Phytophthora parasitica] >ETL84691.1 hypothetical protein L917_15587 [Phytophthora parasitica] >ETM37833.1 hypothetical protein L914_15738 [Phytophthora parasitica] >ETP07687.1 hypothetical protein F441_16161 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-34
Identity = 103/349 (29.51%), Postives = 155/349 (44.41%), Query Frame = 0
Query:  308 SMTTEEKEAELSRPELVSFLSRASLLVERAVGQDESYNIFVEYCGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGARVGGEMEGRRAVMDLHWSPHFPELFLAAYSGIN--------DGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEMVVGGESGHMY 649
            +++ E+K + +    + +FL++AS ++ERA+     Y+I ++Y                                                   ++      +    RAV D+  SP +PEL L AY+  N        DG    + +  N                   A   +G+VL+WS ALP RPE RF C S V ++ F+P D H++ GGTYSGQ+V WDTRAK+ PVQ++ LS   HTHP+YA+ V G+  S    TL+SAS DGRVC WD+  L +PL++  +R                               S+T+F +   GK   E+ +G E+G +Y
Sbjct:  184 TLSVEDKTSLMQSDAMEAFLTKASRVIERALNTSSKYDIMIDY---------------------------------GADVEQDSAVEEATESLKQQYVFADSQWSKHRAVTDVDVSPFYPELTLVAYTARNFLEDEDKDDGMSSQWDTMGNSATAALTEV----------AAITEGVVLLWSTALPGRPEYRFTCHSQVTSACFNPFDRHIIIGGTYSGQIVVWDTRAKSAPVQKTALSAFSHTHPIYAMAVAGTKTS---YTLISASTDGRVCVWDLDHLQKPLDMLDLR----------ISLSIVSNYTSVNTSDKKMEASVTSFAVL--GKEIKELFIGTEAGKLY 474          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: ETI37795.1 (hypothetical protein, variant [Phytophthora parasitica P1569] >ETK78003.1 hypothetical protein, variant [Phytophthora parasitica] >ETL31436.1 hypothetical protein, variant [Phytophthora parasitica] >ETL84692.1 hypothetical protein, variant [Phytophthora parasitica] >ETM37834.1 hypothetical protein, variant [Phytophthora parasitica] >ETP07688.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-34
Identity = 103/349 (29.51%), Postives = 155/349 (44.41%), Query Frame = 0
Query:  308 SMTTEEKEAELSRPELVSFLSRASLLVERAVGQDESYNIFVEYCGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGARVGGEMEGRRAVMDLHWSPHFPELFLAAYSGIN--------DGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEMVVGGESGHMY 649
            +++ E+K + +    + +FL++AS ++ERA+     Y+I ++Y                                                   ++      +    RAV D+  SP +PEL L AY+  N        DG    + +  N                   A   +G+VL+WS ALP RPE RF C S V ++ F+P D H++ GGTYSGQ+V WDTRAK+ PVQ++ LS   HTHP+YA+ V G+  S    TL+SAS DGRVC WD+  L +PL++  +R                               S+T+F +   GK   E+ +G E+G +Y
Sbjct:  184 TLSVEDKTSLMQSDAMEAFLTKASRVIERALNTSSKYDIMIDY---------------------------------GADVEQDSAVEEATESLKQQYVFADSQWSKHRAVTDVDVSPFYPELTLVAYTARNFLEDEDKDDGMSSQWDTMGNSATAALTEV----------AAITEGVVLLWSTALPGRPEYRFTCHSQVTSACFNPFDRHIIIGGTYSGQIVVWDTRAKSAPVQKTALSAFSHTHPIYAMAVAGTKTS---YTLISASTDGRVCVWDLDHLQKPLDMLDLR----------ISLSIVSNYTSVNTSDKKMEASVTSFAVL--GKEIKELFIGTEAGKLY 474          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: XP_008911459.1 (hypothetical protein PPTG_16370 [Phytophthora parasitica INRA-310] >ETN03343.1 hypothetical protein PPTG_16370 [Phytophthora parasitica INRA-310] >ETO66562.1 hypothetical protein F444_16332 [Phytophthora parasitica P1976] >KUF77271.1 Cytoplasmic dynein 1 intermediate chain [Phytophthora nicotianae] >KUF89450.1 hypothetical protein AM588_10008329 [Phytophthora nicotianae])

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-34
Identity = 103/349 (29.51%), Postives = 155/349 (44.41%), Query Frame = 0
Query:  308 SMTTEEKEAELSRPELVSFLSRASLLVERAVGQDESYNIFVEYCGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGARVGGEMEGRRAVMDLHWSPHFPELFLAAYSGIN--------DGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEMVVGGESGHMY 649
            +++ E+K + +    + +FL++AS ++ERA+     Y+I ++Y                                                   ++      +    RAV D+  SP +PEL L AY+  N        DG    + +  N                   A   +G+VL+WS ALP RPE RF C S V ++ F+P D H++ GGTYSGQ+V WDTRAK+ PVQ++ LS   HTHP+YA+ V G+  S    TL+SAS DGRVC WD+  L +PL++  +R                               S+T+F +   GK   E+ +G E+G +Y
Sbjct:  184 TLSVEDKTSLMQSDAMEAFLTKASRVIERALNTSSKYDIMIDY---------------------------------GADVEQDSAVEEATESLKQQYVFADSQWSKHRAVTDVDVSPFYPELTLVAYTARNFLEDEDKDDGMSSQWDTMGNSATAALTEV----------AAITEGVVLLWSTALPGRPEYRFTCHSQVTSACFNPFDRHIIIGGTYSGQIVVWDTRAKSAPVQKTALSAFSHTHPIYAMAVAGTKTS---YTLISASTDGRVCVWDLDHLQKPLDMLDLR----------ISLSIVSNYTSVNTSDKKMEASVTSFAVL--GKEIKELFIGTEAGKLY 474          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: XP_008911460.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETN03344.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO66563.1 hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-34
Identity = 103/349 (29.51%), Postives = 155/349 (44.41%), Query Frame = 0
Query:  308 SMTTEEKEAELSRPELVSFLSRASLLVERAVGQDESYNIFVEYCGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGARVGGEMEGRRAVMDLHWSPHFPELFLAAYSGIN--------DGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEMVVGGESGHMY 649
            +++ E+K + +    + +FL++AS ++ERA+     Y+I ++Y                                                   ++      +    RAV D+  SP +PEL L AY+  N        DG    + +  N                   A   +G+VL+WS ALP RPE RF C S V ++ F+P D H++ GGTYSGQ+V WDTRAK+ PVQ++ LS   HTHP+YA+ V G+  S    TL+SAS DGRVC WD+  L +PL++  +R                               S+T+F +   GK   E+ +G E+G +Y
Sbjct:  184 TLSVEDKTSLMQSDAMEAFLTKASRVIERALNTSSKYDIMIDY---------------------------------GADVEQDSAVEEATESLKQQYVFADSQWSKHRAVTDVDVSPFYPELTLVAYTARNFLEDEDKDDGMSSQWDTMGNSATAALTEV----------AAITEGVVLLWSTALPGRPEYRFTCHSQVTSACFNPFDRHIIIGGTYSGQIVVWDTRAKSAPVQKTALSAFSHTHPIYAMAVAGTKTS---YTLISASTDGRVCVWDLDHLQKPLDMLDLR----------ISLSIVSNYTSVNTSDKKMEASVTSFAVL--GKEIKELFIGTEAGKLY 474          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: CCI41358.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-34
Identity = 84/177 (47.46%), Postives = 107/177 (60.45%), Query Frame = 0
Query:  415 RAVMDLHWSPHFPELFLAAYSGINDGSGDIFPSSSNXXXXXXXXXXXXXXXXXFG-AEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVR 591
            RAV DL  S  FPEL LA+YS        +  S +N                    AE  +GLVL+WS ALPSRPE RF C + V  + F+P D H++ GGTYSGQ+V WDTRAK  PVQ++P+ST+ HTHP+Y++ + GS  S     L+SAS DGRVC WD  QL QP++V  +R
Sbjct:  273 RAVTDLDVSMFFPELLLASYS----SREFLEQSDANMSNQWDSLVSQVESTEKLDLAEITEGLVLLWSTALPSRPEYRFTCHAQVTAACFNPFDRHIVIGGTYSGQIVVWDTRAKNTPVQKTPMSTSSHTHPIYSMAIIGSKTS---YNLISASTDGRVCIWDTDQLQQPVDVFDLR 442          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: CCI41359.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 156.8 bits (395), Expect = 2.600e-34
Identity = 84/177 (47.46%), Postives = 107/177 (60.45%), Query Frame = 0
Query:  415 RAVMDLHWSPHFPELFLAAYSGINDGSGDIFPSSSNXXXXXXXXXXXXXXXXXFG-AEEMDGLVLVWSLALPSRPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVR 591
            RAV DL  S  FPEL LA+YS        +  S +N                    AE  +GLVL+WS ALPSRPE RF C + V  + F+P D H++ GGTYSGQ+V WDTRAK  PVQ++P+ST+ HTHP+Y++ + GS  S     L+SAS DGRVC WD  QL QP++V  +R
Sbjct:  251 RAVTDLDVSMFFPELLLASYS----SREFLEQSDANMSNQWDSLVSQVESTEKLDLAEITEGLVLLWSTALPSRPEYRFTCHAQVTAACFNPFDRHIVIGGTYSGQIVVWDTRAKNTPVQKTPMSTSSHTHPIYSMAIIGSKTS---YNLISASTDGRVCIWDTDQLQQPVDVFDLR 420          
BLAST of NO07G04530 vs. NCBI_GenBank
Match: GBG24376.1 (Cytoplasmic dynein 1 intermediate chain 2 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 156.4 bits (394), Expect = 3.500e-34
Identity = 99/317 (31.23%), Postives = 139/317 (43.85%), Query Frame = 0
Query:  415 RAVMDLHWSPHFPELFLAAYSGINDGSGDIFPSSSNXXXXXXXXXXXXXXXXXFGAEEMDGLVLVWSLALPS-RPELRFACPSPVLTSRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALEVQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPXXXXXXXXXXXXXXXXXXXXXXXNVSITAFTLQRDGKGEDEMVVGGESGHMYLHFPXXXXXXXXXXXXXXXXXXXXRGAMPRQWEGHNGLITGLSQHPSSLXXXXXXXXXXXXXXXALGPLVLSSSVDWTIKLW 731
            R V D+ WSPH  ELFLAAY+                                 GA +  G+VL+WS  + S RPE  F CPSPV  + FHP   +L+ GGTYSGQ+V WD RAK++PVQRS LS   HTHPVY++ V GS ++     L+S S DGR+C W++  +S P +   +++                               +TA +L       +E+ VG E G ++                        +  +  Q E H G +T +  H  +                A   L+LS+S+DWT+KLW
Sbjct:  296 RTVTDIQWSPHHKELFLAAYT---------------------KRMVSSELDWARGASDPSGVVLIWSTHMSSERPEYVFTCPSPVHAACFHPYSANLVIGGTYSGQIVLWDMRAKSVPVQRSLLSPESHTHPVYSMTVTGSANA---HNLVSVSTDGRLCVWNLANISAPTDSRQLKY---------------------------NKKDVTATSLAFADGETNELFVGAEDGRLF-----------------RAQVHGTKAGVQSQTEAHFGPVTKMHFHKGT---------------SATADLMLSASMDWTVKLW 529          
The following BLAST results are available for this feature:
BLAST of NO07G04530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ25912.18.800e-4631.76putative: similar to cytoplasmic dynein intermedia... [more]
XP_004359310.12.400e-3532.02cytoplasmic dynein intermediate chain [Cavenderia ... [more]
GAY01722.13.100e-3530.09Hypothetical protein PINS_009559, partial [Pythium... [more]
ETI37794.12.600e-3429.51hypothetical protein F443_16342 [Phytophthora para... [more]
ETI37795.12.600e-3429.51hypothetical protein, variant [Phytophthora parasi... [more]
XP_008911459.12.600e-3429.51hypothetical protein PPTG_16370 [Phytophthora para... [more]
XP_008911460.12.600e-3429.51hypothetical protein, variant [Phytophthora parasi... [more]
CCI41358.12.600e-3447.46unnamed protein product [Albugo candida][more]
CCI41359.12.600e-3447.46unnamed protein product [Albugo candida][more]
GBG24376.13.500e-3431.23Cytoplasmic dynein 1 intermediate chain 2 [Auranti... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL104nonsL104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008411NSK008411Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04530.1NO07G04530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100274g4gene3615Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04530.1NO07G04530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04530 ID=NO07G04530|Name=NO07G04530|organism=Nannochloropsis oceanica|type=gene|length=4589bp
ATGTTCAACGGTGCTTCGCGGATTCATCGCCAACGCCATCCTCCTTTCAC
GTCACGTTCCATCTCACCTCTAAACCCCTTCCGACCCACGACGCTCACAA
TCACAGGCACCACGGCCATGGAGGAAGCCCGTCGGAAGCGTGCCGCGGCG
CTGGAGGAGAAGAAAAAGCGCTTGGAAGAGATGCGGAAGAAGAGGGCGGA
GCGCGAAGGAGGAGGAGGAAGAGGAGGAATAGGAGGAATAGGAGGAGAGG
CGAGTGTTGAGGAGGTCTCTGCGTCTGCACGACCACCTCCACGGCTGACA
ACACGCACCAGTGACCGTGCTGCGGCGGAAGGAGGGCAAAAGGGGCTGGA
GGAGGAGGGCAACGAGCAATTGGACGCCCTGATCGACTCTTTGCTGAGCG
CGCCACCGCCTTCGATAGTGTCCTCGATGGAAGAGGAAGCAGGAGAGGAA
GGGGGCGGGGAGGAAGGGAAAGACGGCTGTGTTGATGAGAAGAAAAGGAC
GAGGACGATTCCGTCCTCGTGTAAGgtaaggctagaaatgggcaggagag
gcaaggtcaagcgagggcaggctggcctactggctttggtcgataatgac
gatggttggtgctgacttgacaggatgaaaagcgcttcggccgcaatata
aagggggtgttgcatcgatgagaaaatgcactatagggcgccgactcgca
gaggctcacccacccacccacccacccacccacacactcatccgcgcgga
cacagGGGGATGCGAACGTGATAGGGGCTCTGGCGTCGCCGGAAGGGGGA
ATGGGAGTCTCGCTCTCTGTTGTCCAAGCACTCGgtaaggagggagggag
ggaaggagggagggagggagggataggatgaaagacgtgggtgcatccga
aaggcgaagagccattaaaaatagtgcgttcggttggttgggttgccagc
tttctgacctggggcttcaaccctctctctctctctctctctctctctct
ctctctctctcttttctctcttttctctctgtctgtctctctctgtctgt
ctgtctctgtctgtctctctctactctctctgtctgtctctctctcactt
tctaccctacccatgccgccccctctacacccatgcaccaaaactaccac
ttctgccgctactactacaacaatcatcaaaagGGAAAATTGTCATCCCT
CCCGCGCCCGCTGTCGAGTGCTATGACAAGAGCACCCAGACGGACCTTCT
CTTTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAAGAAGGAGGG
AGGACAGGAAGGCGCAAGCTTCCGCTGGAGGTGGACAGAGAGGGAAAGGA
AAAGGGGGTAGAGAGGGAGGGGATGAGGAGGAGGAGGAAGGGGAGGAGGA
GAAAGAGGAGGAGGGAGGGGAGGGAGGAGATGGCACACGCCTGGCAGAAA
ACGAATCGGCGGGATCACCTGCAGCGAAAAATGCCGGCAGCGTCAAACCG
TCCATGACCACGGAGGAGAAGgtgggcgacagcagggagggaggggggga
gggagggagggagggagaagaaggcggaaatgaaagatgtttcactttcc
ccccgctcgtgggggcacaatgtctcatctctcccttatttcctcccccc
ctccctcccttcatccctccttccctttaaacgcagGAGGCCGAGCTCTC
CCGACCTGAGTTGGTTTCATTCCTTTCAAGGGCTTCCTTGTTGGTGGAGC
GAGCGGTGGGACAGgtagagagggagggagggagggagggttggaatgag
aggacggaatgcgtcatgtttatatatttattgacttcagcttgcgttaa
gggaggcgtgggaaaagggggcaagaggggcagaggcacccggtcaccga
ctccttcgaaattgttgtcttactgttcaatagGACGAGAGCTACAACAT
TTTCGTGGAATATTGCGGCCAGGGCAGGGAGGAGGAAGGGGGGGAGGAGA
AGAGGAAGAGGGAGTCGGGGGGCGGGCTTACGCGCCTGCTGCAGgtatgg
agggagggagggaggaagggagggagggagggaggaagggaggaagggaa
aattttcgttgatacatacacaaattgttatgtgcccaacttaatttctt
gacagTTTTCGGTAGCCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGC
AGCAGCACCAGCAGCAGCGGCAACAGTAGGGAAGGGGCTCGGGTGGGGGG
AGAAATGGAGGGGAGGAGGGCTGTGATGGACCTGCACTGGTCTCCACACT
TCCCAGAATTATTTTTAGgtacggagggagggagggagagggaggaaggg
agggagggagggggcttggcagaaggaagtgctgcccctcacaccctact
ttcccacgtacccgttgcattcgcagCCGCCTACAGCGGCATCAACGACG
GGAGCGGGGATATTTTCCCCTCCTCCTCCAACTCATTCTCCTCCTCGTCC
TCGCCCTCCTTCCCGCCTTCGGCCGCTGCCTCGTTCGGGGCCGAGGAGAT
GGACGGCCTGGTTCTTGTGTGGTCTCTCGCGCTCCCCTCCAGgtagggag
gtagggaggtagggagggagggagggagggggtggtggtggtggtggtat
gtcttgctgttgccttccaacccacataacgatcaaactgatttcatgca
cacagACCTGAGCTCCGTTTCGCCTGTCCTTCCCCAGTGCTAACGTCACG
CTTCCACCCTTCCGACCCGCATCTCCTTTTCGGgtgagtcttttgcgtgg
cgagggagggagggagcgagggaaggaggaggaagggaaagggctcttca
gagacgggaaaagcacgcgcgctccaactcgtcctccttccttcccgccc
tccctccctccctccctcccttccacctttccgacctctccagAGGCACA
TACTCCGGCCAGGTGGTGGCGTGGGACACGCGGGCCAAGGCCCTTCCTGT
TCAGCGCTCGCCTCTCTCCACCGCAGgtacgatatccatccatccctctt
tggctttttctaccactactcctcctcctacaactactcctacgacaacg
acaacaacaacaacaataacaacaacaacaacaattactactacttctac
aatgtcaatttcttcttcttcttcttcttcttcttcttcttcttcttctt
ttccttcttctacatgccaagtactttccctctccccttcctctttcctc
tcatcgcttcctccgtctctccctccctccggcccgacacacccacacgg
gcctttatgccatagcagtgcaaggcttcagaaaccacccccccccctcc
ccccctcacgctgcttcccttcctccttccctccctcccttcttcctttc
gtcgttcagGCCACACTCACCCCGTGTACGCCCTGGAGGTGCAAGGCAGC
GGCGACAGCATCCAGCCGCAAACGCTCCTTTCGGCGTCCGCGGATGGCCG
AGTGTGTCGGTGGGATATCAGgtgcgagggagggagggaggagaggcagg
gaaaggagagatgtgtagtctgatcgaggttttcgtgtacgtacgagcag
ACAGCTGTCGCAGCCGTTGGAAGTGACGCATGTCCGGCACTACGATGGGT
GCCCTCCCTCGTCTTCATGCAGCAGCCGCAGCAGCTGCAGGGAGCAGCAG
CAGCAGCAGCAGCAGCCGCCGCGGAATGTCAGCATAACGGCTTTTACATT
GCAAAGGGATGGAAAGgtagggagggggggaagagtcggagaagggagac
atagcagagaaaaagtgctcatgaagatgagggcgggcttccatacggag
cagaatgttttccatatggaataggacgttttcaatatggaataggattc
aatatggaataggattcaatatggaataggatttattcatgcatcgtctc
tccttctttccctccctcctgcctccatacatccctcccttccttgtccg
atgcttaacagGGAGAAGACGAGATGGTGGTCGGCGGAGAGAGCGGGCAC
ATGTATCTTCACTTCCCCTCTTCTTCTTCATCCTCCTCCTCCTCCTCCTC
TTTCTCTTTATCCTCTCTTTCTGCTGGGCGAGGGGCAATGCCGCGACAGg
tcagtagggaagacgtggaaacgatggagggagagaaaatgtggcggaag
acaagcacgttcgtgaatgattcgtcaccacctcatcctccctccctccc
tccctctcttcctcctcattcttcagTGGGAAGGCCACAATGGACTCATC
ACCGGCCTGTCCCAGCACCCGTCCTCCCTCTCTTCCTCCTTCCCTTCCTC
CTCCTCGTCCGCCTCATCGCGTTCGGCACTCGGCCCCCTCGTCCTCTCTT
CCTCTGTCGACTGGACCATCAAGCTCTGGTGCGTCTAGGAAAGGAGGGAT
GGATAGAAGGAGGAGAAGAGAACATGCGCCGGCGAGTGTTCCAAATCTCC
AGAAACTGATTTTTTATATGACGTACCTCCTCCCCTCCCTCCTTTCCTCC
TTCCCTCTTCTCCTCTCTTCGTCCCATCTCTCACCGCAG
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protein sequence of NO07G04530.1

>NO07G04530.1-protein ID=NO07G04530.1-protein|Name=NO07G04530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp
MFNGASRIHRQRHPPFTSRSISPLNPFRPTTLTITGTTAMEEARRKRAAA
LEEKKKRLEEMRKKRAEREGGGGRGGIGGIGGEASVEEVSASARPPPRLT
TRTSDRAAAEGGQKGLEEEGNEQLDALIDSLLSAPPPSIVSSMEEEAGEE
GGGEEGKDGCVDEKKRTRTIPSSCKGDANVIGALASPEGGMGVSLSVVQA
LGKIVIPPAPAVECYDKSTQTDLLFEEEEEEEEEEERRRREDRKAQASAG
GGQRGKGKGGREGGDEEEEEGEEEKEEEGGEGGDGTRLAENESAGSPAAK
NAGSVKPSMTTEEKEAELSRPELVSFLSRASLLVERAVGQDESYNIFVEY
CGQGREEEGGEEKRKRESGGGLTRLLQFSVARRRRRRSSSSSSSTSSSGN
SREGARVGGEMEGRRAVMDLHWSPHFPELFLAAYSGINDGSGDIFPSSSN
SFSSSSSPSFPPSAAASFGAEEMDGLVLVWSLALPSRPELRFACPSPVLT
SRFHPSDPHLLFGGTYSGQVVAWDTRAKALPVQRSPLSTAGHTHPVYALE
VQGSGDSIQPQTLLSASADGRVCRWDIRQLSQPLEVTHVRHYDGCPPSSS
CSSRSSCREQQQQQQQPPRNVSITAFTLQRDGKGEDEMVVGGESGHMYLH
FPSSSSSSSSSSSFSLSSLSAGRGAMPRQWEGHNGLITGLSQHPSSLSSS
FPSSSSSASSRSALGPLVLSSSVDWTIKLWCV*
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