NO07G03970, NO07G03970 (gene) Nannochloropsis oceanica

Overview
NameNO07G03970
Unique NameNO07G03970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3544
Alignment locationchr7:1103369..1106912 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial 28s ribosomal s29-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1103369..1106912 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019368Ribosomal_S23/S29_mit
Homology
BLAST of NO07G03970 vs. NCBI_GenBank
Match: EWM26968.1 (mitochondrial 28s ribosomal s29-like protein [Nannochloropsis gaditana])

HSP 1 Score: 527.7 bits (1358), Expect = 6.400e-146
Identity = 344/677 (50.81%), Postives = 412/677 (60.86%), Query Frame = 0
Query:  139 VPHSSFSTKSINGGDGGKPPR-SGRKAKG---SNSSSSRAPASLPYASDKE--PRDPIKITLPPGMKTEGMTVEEITASADAYELQ-------XXXXXXXXXXXXXXXXXXXSYVYAPSNDPRTHADAGGAAAVGKVYTLNEEEVGRFFPGPWSKPGRVPWEAGLQSLLASKFLLVRPQAIEVIEHLKAFAARG-GRGWVDGMEGAEKLREEWVRGGGLAAAMARGKDIE--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEGVYEGRKTDWDMYGTLKRLAVDDVTLEHPEQTLELPLTEAPTEDGKEGG-----RSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNLLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPAYDILHPPSYSPSEFQALYHFVADQGLWGSSPTLDDSSIRQARVATAAHPLTFARDAAAIDRRLFSPQNKVGKASAHAPANFMLVDL 795
            +P  +F+TKS +  D  KPPR +G K K       S++   + +  A +KE    D   + LPPG +TEGMTVEE+   ADAY LQ                          + VYAPS+DPR H + G   A+GK+YTL+EEEV R+FPGPW +P RVPW   LQ++L  ++LLVRPQA+EV++ L +FA +G  +G   GME  E LR +W   GG   A AR K  E                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     YE RKTDWD YGTLK+LAVDD +L HPEQ LELP+   PTE G+        RSIFLLSGPRGSGKTA+LYH VHYAR+SGW+VFF+PSA+EYLHEGGL+RPSPF++GYFDTPDLAQTTLRQLGEAHGHQ A LP      +E L L            T  DL+ LGLS++K ATTCLLELKR + E Q  YPVLFAVDE SEWFYPS+Y YA+KKIEASRL +VA+LR LLP                                                      L  YD+  PP+YSP+EFQ LY+FVADQGLWG  P+   +++RQAR+ +A HP TFA+DA  ++RRLF+PQN+VGKASA APANFML DL
Sbjct:   70 LPSRTFTTKSTD-EDQVKPPRATGGKYKARAMGKRSAALTDSGIDDALEKELLYLDTSSLVLPPGTQTEGMTVEEMQTLADAYALQMQEKANREGDVEEGHYPEVTSERLDPTMVYAPSDDPRHHVEEG---AMGKIYTLSEEEVKRYFPGPWRRPSRVPWLTDLQAVLTRRYLLVRPQAVEVMQGLGSFAGKGREQGRFGGMERVEALRNDWEEKGGFDGAFARAKRGEGGEVRPSVAPTPPLGKVADEEERGEGEEGAVDGERVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAYEARKTDWDQYGTLKQLAVDDSSLVHPEQRLELPVPAVPTEGGRXXXXXXXVRSIFLLSGPRGSGKTATLYHAVHYARRSGWVVFFVPSAFEYLHEGGLIRPSPFYRGYFDTPDLAQTTLRQLGEAHGHQFASLPYTAPRGLESLELS--------GEYTCWDLMALGLSQRKWATTCLLELKRAL-ENQDAYPVLFAVDEVSEWFYPSSYFYARKKIEASRLAVVASLRGLLPFPPSGPGYGKHHQRFAFLAAYSHRYPRRSYKKASKGAEGRKRRGDLPPYPLPRFLAPYDVPLPPTYSPTEFQVLYNFVADQGLWGPQPSFTSAALRQARMISAGHPGTFAKDAVVLERRLFAPQNRVGKASACAPANFMLADL 733          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_005855915.1 (mitochondrial 28s ribosomal s29-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20445.1 mitochondrial 28s ribosomal s29-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 338.2 bits (866), Expect = 7.200e-89
Identity = 177/314 (56.37%), Postives = 209/314 (66.56%), Query Frame = 0
Query:  470 RSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNLLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPAYDILHPPSYSPSEFQALYHFVADQGLWGSSPTLDDSSIRQARVATAAHPLTFARDAAAIDRRLFSPQNKVGKASA 784
            RSIFLLSGPRGSGKTA+LYH VHYAR+SGW+VFF+PSA+EYLHEGGL+RPSPF++GYFDTPDLAQTTLRQLGEAHGHQ A LP      +E L L            T  DL+ LGLS++K ATTCLLELKR + E Q  YPVLFAVDE SEWFYPS+Y YA+KKIEASRL +VA+LR LLP                                                      L  YD+  PP+YSP+EFQ LY+FVADQGLWG  P+   +++RQAR+ +A HP TFA+DA  ++RRLF+PQN+VGKASA
Sbjct:    2 RSIFLLSGPRGSGKTATLYHAVHYARRSGWVVFFVPSAFEYLHEGGLIRPSPFYRGYFDTPDLAQTTLRQLGEAHGHQFASLPYTAPRGLESLELS--------GEYTCWDLMALGLSQRKWATTCLLELKRAL-ENQDAYPVLFAVDEVSEWFYPSSYFYARKKIEASRLAVVASLRGLLPFPPSGPGYGKHHQRFAFLAAYSHRYPRRSYKKASKGAEGRKRRGDLPPYPLPRFLAPYDVPLPPTYSPTEFQVLYNFVADQGLWGPQPSFTSAALRQARMISAGHPGTFAKDAVVLERRLFAPQNRVGKASA 306          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: CBN75983.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.0 bits (284), Expect = 2.200e-21
Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 0
Query:  469 GRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNLLPP 653
            G+  +LL+G RGSGK+  L H V +AR +GW+V F+P     + +G   +PSP  +G +D P  +   L+ L EAHG QL  + +KD EV   LG  EG +       TLLD++ +GL+ ++ A T   ++ R +    +   V+ A+DE++E F  S +HY   K+EA  L    A   LLPP
Sbjct:  353 GQRSYLLTGRRGSGKSCVLDHAVLHARSTGWIVLFVPDGRNLVQKGIYCQPSPVLEGLYDLPVQSMKRLKTLREAHGDQLKNISIKDPEV---LGRHEGAK-------TLLDVMDMGLADQEHAGTAHYDVMREL-LATTEAKVMLAIDEYNELFQMSQWHYGDNKLEAPHL---TATLPLLPP 522          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_009830417.1 (hypothetical protein H257_06763 [Aphanomyces astaci] >ETV80493.1 hypothetical protein H257_06763 [Aphanomyces astaci])

HSP 1 Score: 107.1 bits (266), Expect = 2.700e-19
Identity = 65/212 (30.66%), Postives = 107/212 (50.47%), Query Frame = 0
Query:  446 LEHPEQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLK--------DREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650
            L  P  T+   ++  P           F+L G RG+GKT SL   V++AR++GW+V  +P A  ++HE   V  S F +G FD   +    L+QL + +G QLA LPL+         R  V++    +   E      TLLD+   GL    L    +++LK  + +  + +PVL A+DE++ WF  + + Y    ++A  + ++ ALR++
Sbjct:   96 LRKPVATILSAMSNFPXXXXXXXXXXAFVLDGERGTGKTVSLIQIVNFARENGWIVLHVPHARAWIHEAPYVTKSAFHEGKFDIDVVGADILKQLIQCNGTQLASLPLRGDYGDAYYPRSFVKK---PKSASEYNKSDLTLLDICESGLKDDLLTCKAVVDLKAELAQ-VTEFPVLIAIDEYNAWFQKTVFGYEGVPVKAEDITVIDALRDV 303          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_009033070.1 (hypothetical protein AURANDRAFT_61245 [Aureococcus anophagefferens] >EGB11964.1 hypothetical protein AURANDRAFT_61245 [Aureococcus anophagefferens])

HSP 1 Score: 105.9 bits (263), Expect = 6.000e-19
Identity = 65/183 (35.52%), Postives = 101/183 (55.19%), Query Frame = 0
Query:  470 RSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKL--ATTCLLELKRGMEEGQSV-YPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650
            R  +LL+GPRG+GK+ +L   V +AR +GWL  ++P  ++  + G  V PSP   G F+ P  ++  L     AHG QLA + +KD  V +R G            ATL +L+   L+K +L  A+T L +L+   E G++  +PVL AVDE++ +   + Y Y   ++  + LV V+AL  L
Sbjct:  120 RDAYLLTGPRGAGKSVALATVVSWARANGWLALYVPRGWDVANAGDYVVPSPHHAGMFEEPRGSRALLEAFDAAHGGQLAAVAVKDETVADRWG-----------AATLRELLDAALAKDRLDEASTALSDLR--FELGRATEFPVLLAVDEYTSFLGRTDYFYDHARLAPADLVAVSALAPL 289          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_008861182.1 (hypothetical protein H310_00253 [Aphanomyces invadans] >ETW09771.1 hypothetical protein H310_00253 [Aphanomyces invadans])

HSP 1 Score: 105.9 bits (263), Expect = 6.000e-19
Identity = 64/212 (30.19%), Postives = 106/212 (50.00%), Query Frame = 0
Query:  446 LEHPEQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLK--------DREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650
            L  P  T+   ++  P           F+L G RG+GKT SL   V +AR++GW+V  +P A  + H+   V  + + +G FD   +    L+QL + HG QLA LPL+         R  +++    +   E      TLLD+   GL  + L    +L+LK  + E  + +PVL A+DE++ WF+ + + Y    ++A  + +V A R++
Sbjct:   97 LRKPVATILSAMSNFPXXXXXXXXXXAFVLDGERGTGKTVSLIQIVTFARENGWIVLHVPHARSWTHDAPYVTKAAYHEGKFDIDVVGADILKQLIQCHGDQLASLPLRGDYGDVYYPRTFIKK---PKKASEYNKGDLTLLDICESGLKDELLTCKAVLDLKAELAE-VTEFPVLIAIDEYNTWFHKTVFGYEGVPVKAEDITIVDAFRDV 304          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_008899175.1 (hypothetical protein PPTG_06879 [Phytophthora parasitica INRA-310] >ETI55598.1 hypothetical protein F443_01767 [Phytophthora parasitica P1569] >ETK95388.1 hypothetical protein L915_01686 [Phytophthora parasitica] >ETL48776.1 hypothetical protein L916_01661 [Phytophthora parasitica] >ETM55075.1 hypothetical protein L914_01677 [Phytophthora parasitica] >ETN15649.1 hypothetical protein PPTG_06879 [Phytophthora parasitica INRA-310] >ETO84313.1 hypothetical protein F444_01774 [Phytophthora parasitica P1976] >ETP25404.1 hypothetical protein F441_01735 [Phytophthora parasitica CJ01A1] >ETP53384.1 hypothetical protein F442_01712 [Phytophthora parasitica P10297])

HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18
Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0
Query:  450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650
            + TL++       E  K      +L+ G RG+GK+ +L+  V YAR+S W+V +IP+   + +E   V  SP+ +G FD        L++    HG QL  +PL+ +        ++   K        + A TL D+VV G+  ++LA   + +LK  + +  + +PVL A+D+++ WF P+ + Y  K + A  + ++AAL+++
Sbjct:  109 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESNWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 313          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: ETM01833.1 (hypothetical protein L917_01625 [Phytophthora parasitica])

HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18
Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0
Query:  450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650
            + TL++       E  K      +L+ G RG+GK+ +L+  V YAR+S W+V +IP+   + +E   V  SP+ +G FD        L++    HG QL  +PL+ +        ++   K        + A TL D+VV G+  ++LA   + +LK  + +  + +PVL A+D+++ WF P+ + Y  K + A  + ++AAL+++
Sbjct:  109 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESSWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 313          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: KUF94963.1 (COP9 signalosome complex subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18
Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0
Query:  450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650
            + TL++       E  K      +L+ G RG+GK+ +L+  V YAR+S W+V +IP+   + +E   V  SP+ +G FD        L++    HG QL  +PL+ +        ++   K        + A TL D+VV G+  ++LA   + +LK  + +  + +PVL A+D+++ WF P+ + Y  K + A  + ++AAL+++
Sbjct:  207 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESNWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 411          
BLAST of NO07G03970 vs. NCBI_GenBank
Match: KUF97934.1 (28S ribosomal protein S29 [Phytophthora nicotianae])

HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18
Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0
Query:  450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650
            + TL++       E  K      +L+ G RG+GK+ +L+  V YAR+S W+V +IP+   + +E   V  SP+ +G FD        L++    HG QL  +PL+ +        ++   K        + A TL D+VV G+  ++LA   + +LK  + +  + +PVL A+D+++ WF P+ + Y  K + A  + ++AAL+++
Sbjct:  106 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESNWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 310          
The following BLAST results are available for this feature:
BLAST of NO07G03970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26968.16.400e-14650.81mitochondrial 28s ribosomal s29-like protein [Nann... [more]
XP_005855915.17.200e-8956.37mitochondrial 28s ribosomal s29-like protein, part... [more]
CBN75983.12.200e-2137.50conserved unknown protein [Ectocarpus siliculosus][more]
XP_009830417.12.700e-1930.66hypothetical protein H257_06763 [Aphanomyces astac... [more]
XP_009033070.16.000e-1935.52hypothetical protein AURANDRAFT_61245 [Aureococcus... [more]
XP_008861182.16.000e-1930.19hypothetical protein H310_00253 [Aphanomyces invad... [more]
XP_008899175.12.300e-1829.13hypothetical protein PPTG_06879 [Phytophthora para... [more]
ETM01833.12.300e-1829.13hypothetical protein L917_01625 [Phytophthora para... [more]
KUF94963.12.300e-1829.13COP9 signalosome complex subunit 1 [Phytophthora n... [more]
KUF97934.12.300e-1829.1328S ribosomal protein S29 [Phytophthora nicotianae... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000448NSK000448Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03970.1NO07G03970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525020gene_2742Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100392g1gene3581Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03970.1NO07G03970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03970 ID=NO07G03970|Name=NO07G03970|organism=Nannochloropsis oceanica|type=gene|length=3544bp
AAGAAAGAGAAGGTGAATTTAAAGAGAAGCAAGCTGTCGACGGCAGTGAA
GAAAGAGAAGGTGAATTTAAAGAGAAGCAAGCTGGCGACGGCAGTACAGG
AAGAAAAAAGGGAGAAGTGGAAAGAAGCTGTCGACGAGAGTTAGAGAAGG
GAAGAGGAGTTAAAAGAGAGAAGAGAAGTTGAAACAAGCAGGGAGAAAGA
AAGGGACTGATCAAGAATAGCGACATTGAACATGTTTGAGCGTGTGTGTG
CATGATGTGCATGAGATTATAAATAATAATAATAATAATAATAATAATAA
TAATATTCAAGTGTAAGCGTGAAAGGGACGTGCATGCACGGACCCACCCG
GACGAAAGGCAGGTGACCTGTAGAGTGCTGGTAAGGGGGTAAACAAGTTC
ACAAGCAAGAATTATGGAAAAAACAGGAACGCTGACAAAAACAAAAAGCC
GTAAGCTGGCTGTACATGGCACGATCACCAAAGAAAGAGAAGTCTTGTCT
TGAAAATGATTCGCTGTATCATTTCTCATTTTTGGTTCATTGCGTGCCAC
AGGCGGTTCCAATCTTGGAGACAGCAATGTCATCAAGAGATATGTATGGT
AGTCGATGTGTTGTGACGCGACCCTTGCAGAGCCGCTACTGAGGATTTCA
CTTAGTCCTTCGTGCTTTGGGCGACCAGAAGATCGGATCGCTTGGTACCC
TAAAATCATCCGCCAGACATGCCAACCGTACACCGGCACACACACGCACA
CGCACACACATATACACATATATACGCACACAGCGCTTCGGGGGTGCGGC
GTCAACCATAAGAAAGCTAAGATGAAGCGCTTGCTGTGCGGTGGCGGTGG
GGGCAGCGGTAATAGACGGCTCATGCTGCTAGCCTCTTCACCATCATCGA
CGTCGAGACCCGCAGCTGCGGCAATGGCAGCGACGAGAAGGgtgagtgca
tgcccctatagaccctttggctgttctttcctgtacctggactttgtctt
aattgttggtctttccgtcaacgactgagtcattgaataggctcccaatt
tccacctccttccctcacctcacgccaccgtcataaaaccagaagaactc
ctccatcctattctgctttcgcgagcacaactagatcttcgcaccccccg
cgtatgtcaagcttagggtttcccttactcacttatcctcttgttgtatg
acttttgctattttggtctccacccatccacccaccttctgagaacctcc
tggcatttccctcccccccaccaaaaaaatagTCTTTAAGAATAACATCA
GTCGCTGGCGGTTCCTCCCCCCCCTCCTCCTTCTCCTCTTGGCCTTCTTC
TCTCGTTCTCGTCCCCCACTCCTCTTTCTCCACCAAATCCATTAACGGGG
GCGATGGTGGCAAGCCGCCCCGAAGCGGGCGAAAGGCCAAGGGTAGCAAC
AGCAGCAGCAGTCGTGCGCCTGCCTCCTTGCCTTATGCATCGGACAAAGA
GCCGAGAGATCCTATCAAAATCACTCTCCCTCCTGGCATGAAGACGGAGG
GCATGACGGTAGAAGAGATTACGGCCTCGGCTGATGCCTACGAGCTGCAG
CAGAAGGGGAAAGCCACCAGTAGCAGCAGCAGCAGCAGCAGCGGAAAGCT
AGATCTGAGCTACGTCTATGCCCCGTCGAACGATCCCCGCACGCACGCCG
ACGCCGGGGGAGCAGCCGCGGTGGGAAAAGTGTACACCCTGAATGAGGAG
GAGGTGGGGAGATTTTTCCCGGGGCCGTGGAGCAAGCCAGGAAGGGTGCC
CTGGGAGGCAGGACTGCAATCGCTCCTGGCGTCAAAGTTCTTGCTGGTAA
GACCACAGGCAATCGAGGTGATTGAACACTTGAAGGCCTTTGCTGCAAGG
GGAGGACGAGGGTGGGTGGACGGAATGGAGGGAGCGGAGAAACTGAGGGA
GGAGTGGGTCAGAGGTGGGGGGCTGGCGGCAGCGATGGCCAGGGGGAAGG
ATATAGAGGTGTCACCACAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAAG
GCGGAAAGGAATGTGGCGCCGGCTGGAAGAGTGGGGGAGGAGGAAGGGGA
GGAGGAGGAGGAGGAGGAGGAGGACGATTATGATTTATTCGGAGAGGAGG
AGGATGAGGAGGAGCAGGAGCGGAAAGAGAAGAAAGCAGCGGGAGGGTTG
GGAGAGGGGGTGTATGAGGGTAGGAAGACAGATTGGGATATGTATGGGAC
GTTGAAACGGCTGGCCGTTGACGATGTAACGTTAGAGCATCCGGAGCAAA
CCCTAGAGCTGCCCTTGACTGAGGCACCGACAGAGGACGGGAAGGAGGGA
GGACGGTCGATTTTCTTGCTGTCAGGTCCCCGAGGATCAGGGAAAACAGC
CTCCTTGTATCACACGGTGCATTATGCGAGGAAGAGCGGTTGGCTGGTGT
TTTTCATCCCCTCGGCATACGAATATCTGCATGAGGGGGGCTTGGTCCGG
CCCTCGCCTTTTTTTAAGGGGTATTTTGATACGCCTGACTTGGCGCAGAC
GACGTTGAGACAGCTGGGGGAGGCCCATGGACATCAGCTGGCAGGGCTGC
CGCTGAAGGATAGGGAGGTGGTGGAGAGGCTGGGCCTGAAGGAGGGAGGG
AGGGAGGGAGGGCCCGAGGGGGCGACTTTGCTGGATTTGGTGGTGTTGGG
CCTGAGTAAAAAGAAGCTGGCCACGACGTGTTTGTTGGAGCTTAAGCGAG
GCATGGAGGAAGGGCAGTCGGTATACCCCGTTCTCTTTGCCGTGGATGAG
TTTTCGGAGTGGTTTTACCCCAGCACCTACCACTATGCACAGAAGAAAAT
CGAGGCCTCGCGCCTCGTTCTCGTGGCCGCTCTCAGGAACCTCCTTCCGC
CCTCCCCCTCCTCCCCTTCCTACGGGAAGCACCACAAACACATCGCCTTC
CTCGCAGCCCGGACGGGGCGGTATCCCCGTCTCTCTCGCGCCAAAGCCAA
GAAAGGTCAAGAAGGCCGCAAGCGTCTTGCCGACCTGCCCCCCCACCCCC
TCCCTCCCTCCCTCCCTGCCTACGACATCCTCCACCCACCCTCCTACTCC
CCCTCCGAATTCCAAGCCCTTTATCACTTCGTTGCCGACCAGGGACTTTG
GGGCTCCAGTCCCACGCTGGACGACAGCAGCATCCGGCAAGCCCGTGTGG
CCACGGCGGCTCATCCCCTCACCTTTGCACGGGACGCGGCAGCGATTGAT
AGGCGCCTCTTCTCACCGCAGAACAAGGTAGGGAAGGCCTCGGCCCATGC
ACCCGCCAATTTCATGTTGGTTGATTTACTGGAGGAGGGGGGAGGGGGAG
GGGAGGAGGGGGGTAGGAAGGACGGAGGGGGGGGAGGGACCAGGAGGCAG
CAGCAACAGCAGCAGAGGGCGTAAAGGATCGGAGCGGTAGGAAATGAAGG
AAGGAGGGGAAGAGGGAAGGAAAGAAGGTAGAGAGATGAGGTGAGCCCGA
AGAGAGAAAGAAGCTAGAAAGAAGCAGGAGAAAGGACGTCTCTC
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protein sequence of NO07G03970.1

>NO07G03970.1-protein ID=NO07G03970.1-protein|Name=NO07G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=826bp
MCCDATLAEPLLRISLSPSCFGRPEDRIAWYPKIIRQTCQPYTGTHTHTH
THIHIYTHTALRGCGVNHKKAKMKRLLCGGGGGSGNRRLMLLASSPSSTS
RPAAAAMAATRRSLRITSVAGGSSPPSSFSSWPSSLVLVPHSSFSTKSIN
GGDGGKPPRSGRKAKGSNSSSSRAPASLPYASDKEPRDPIKITLPPGMKT
EGMTVEEITASADAYELQQKGKATSSSSSSSSGKLDLSYVYAPSNDPRTH
ADAGGAAAVGKVYTLNEEEVGRFFPGPWSKPGRVPWEAGLQSLLASKFLL
VRPQAIEVIEHLKAFAARGGRGWVDGMEGAEKLREEWVRGGGLAAAMARG
KDIEVSPQQQQQQQQKEKAERNVAPAGRVGEEEGEEEEEEEEDDYDLFGE
EEDEEEQERKEKKAAGGLGEGVYEGRKTDWDMYGTLKRLAVDDVTLEHPE
QTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWL
VFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAG
LPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELK
RGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNLL
PPSPSSPSYGKHHKHIAFLAARTGRYPRLSRAKAKKGQEGRKRLADLPPH
PLPPSLPAYDILHPPSYSPSEFQALYHFVADQGLWGSSPTLDDSSIRQAR
VATAAHPLTFARDAAAIDRRLFSPQNKVGKASAHAPANFMLVDLLEEGGG
GGEEGGRKDGGGGGTRRQQQQQQRA*
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Synonyms
Publications