NO06G04270, NO06G04270 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G04270
Unique Name	NO06G04270
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	6150
Alignment location	chr6:1194115..1200264 -

Link to JBrowse

Properties


Property Name	Value
Description	Secis binding protein 2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1194115..1200264 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0035368	selenocysteine insertion sequence binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR029064	L30e-like
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45

Homology

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: CBN78485.1 (SECIS binding protein 2 [Ectocarpus siliculosus])

HSP 1 Score: 110.5 bits (275), Expect = 2.600e-20
Identity = 66/189 (34.92%), Postives = 112/189 (59.26%), Query Frame = 0

Query:  508 RFPPKYREASHLPK---LRGGGREQHGEGEGGREGGEEPPSRTHMTVRGDAVLCTEELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIER---SPALDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKARELLAL 691
            R   KY+EA+ LPK   +RGG    +           +PP +              E+ + + E+++LL  FQERARL D +K K  RR+V GLREV+RG++++K++ +++AP+++       LD ++ EI   A E + PVVF LS R++GK LGK+++++ VGV S +GA ++ +++ R+   + +L
Sbjct:  672 RIQTKYQEAAALPKPPGVRGGLPNAY---------VNQPPDK--------------EVNDLVFEMLQLLFKFQERARLSDPSKAKTRRRLVIGLREVLRGVKAKKVRLLIVAPNVDAVGGEGGLDDKVVEIIDKAREAEYPVVFALSKRKIGKALGKTIKVSAVGVYSFDGANEQQKQLKRRMETISSL 837

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: XP_008611441.1 (hypothetical protein SDRG_07389 [Saprolegnia diclina VS20] >EQC35157.1 hypothetical protein SDRG_07389 [Saprolegnia diclina VS20])

HSP 1 Score: 101.7 bits (252), Expect = 1.200e-17
Identity = 56/130 (43.08%), Postives = 82/130 (63.08%), Query Frame = 0

Query:  561 ELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIERSPA---LDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKAREL 688
            EL+  +  L+  LM  QERARL +  K KK RR+VFGLREV RG++S K+  +++A D++   A   LD +I E+   A  N +PVVF LS R+LGK + K++R++ VG+ S +GA D +  V +    L
Sbjct:  383 ELQVGVTALLGRLMQLQERARLTNPLKAKKTRRLVFGLREVKRGLKSLKVMCLLVAYDVDECAADGGLDDKIVELIDLARANKIPVVFALSKRKLGKAVLKTIRVSCVGIYSVDGANDMWTSVQKSVASL 512

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: XP_012209209.1 (hypothetical protein SPRG_14646 [Saprolegnia parasitica CBS 223.65] >KDO20107.1 hypothetical protein SPRG_14646 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 100.1 bits (248), Expect = 3.500e-17
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 0

Query:  561 ELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIERSPA---LDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKAREL 688
            EL+  +  L+  LM  QERARL +  K KK RR+VFGLREV RG+++ K+  +++A D++   A   LD +I E+   A  N +PVVF LS R+LGK + K++R++ VG+ S +GA D +  V +    L
Sbjct:  381 ELQVGVTALLGRLMQLQERARLTNPLKAKKTRRLVFGLREVKRGLKNLKVMCLLVAYDVDECAAEGGLDDKIVELIDLARANKIPVVFALSKRKLGKAVLKTIRVSCVGIYSVDGANDMWASVQKTVASL 510

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: XP_010186238.1 (PREDICTED: selenocysteine insertion sequence-binding protein 2, partial [Mesitornis unicolor])

HSP 1 Score: 99.4 bits (246), Expect = 6.000e-17
Identity = 52/158 (32.91%), Postives = 94/158 (59.49%), Query Frame = 0

Query:  559 TEELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIER---SPALDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKARELLALHAQRQGRLEGGSDVGMHNATPAL 714
            ++E++  + +L++ L+ FQ+R   KD  K K  RR+V GLREV++ ++ +K++ V+I+PD E+      LD+ +  I   A E ++P VF L+ + LG+C+ K+V ++VVG+ S +GA D F  + +   E    +      LE  ++VG+    P++
Sbjct:  153 SKEVDSCVTDLLKELVRFQDRLYQKDPVKAKIKRRLVMGLREVLKHLKLKKLKCVIISPDCEKIQSKGGLDETLHNIIDCACEQNIPFVFALNRKALGRCVNKAVPVSVVGIFSYDGAQDHFHRMVQLTAEARKAYKDMIAALEEAAEVGLRETQPSI 310

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: KFP39178.1 (Selenocysteine insertion sequence-binding protein 2, partial [Chlamydotis macqueenii])

HSP 1 Score: 97.8 bits (242), Expect = 1.800e-16
Identity = 51/158 (32.28%), Postives = 94/158 (59.49%), Query Frame = 0

Query:  559 TEELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIER---SPALDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKARELLALHAQRQGRLEGGSDVGMHNATPAL 714
            ++E++  + +L++ L+ FQ+R   KD  K K  RR+V GLREV++ ++ +K++ V+I+P+ E+      LD+ +  I   A E ++P VF L+ + LG+C+ K+V ++VVG+ S +GA D F  + +   E    +      LE G++ G+    P++
Sbjct:  615 SKEVDSCVTDLLKELVRFQDRLYQKDPVKAKMKRRLVMGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDETLHNIIDCACEQNIPFVFALNRKALGRCVNKAVPVSVVGIFSYDGAQDHFHRMVQLTTEARKAYKDMIAALEEGTEGGLRETQPSI 772

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: XP_010128492.1 (PREDICTED: selenocysteine insertion sequence-binding protein 2, partial [Chlamydotis macqueenii])

HSP 1 Score: 97.8 bits (242), Expect = 1.800e-16
Identity = 51/158 (32.28%), Postives = 94/158 (59.49%), Query Frame = 0

Query:  559 TEELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIER---SPALDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKARELLALHAQRQGRLEGGSDVGMHNATPAL 714
            ++E++  + +L++ L+ FQ+R   KD  K K  RR+V GLREV++ ++ +K++ V+I+P+ E+      LD+ +  I   A E ++P VF L+ + LG+C+ K+V ++VVG+ S +GA D F  + +   E    +      LE G++ G+    P++
Sbjct:  355 SKEVDSCVTDLLKELVRFQDRLYQKDPVKAKMKRRLVMGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDETLHNIIDCACEQNIPFVFALNRKALGRCVNKAVPVSVVGIFSYDGAQDHFHRMVQLTTEARKAYKDMIAALEEGTEGGLRETQPSI 512

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: NP_001090731.1 (selenocysteine insertion sequence-binding protein 2 [Xenopus tropicalis] >AAI29000.1 LOC100036714 protein [Xenopus tropicalis])

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-16
Identity = 56/160 (35.00%), Postives = 96/160 (60.00%), Query Frame = 0

Query:  558 CTEELEED----IKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIER---SPALDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFR-------EVNRKARELLALHAQRQGRLEGGSD 704
            C++ L +D    + EL++ L+ FQ+R  LK+ AK K  RR+V GLREV++ ++ +K++ ++I+P+ E+      LD  +  I S A E +VP VF L+ + LG+CL K+V ++VVGV S +GA D F        +  +  ++++A   ++Q   E G +
Sbjct:  340 CSQVLSKDVDNCVMELLKELVRFQDRLFLKEPAKAKSKRRLVMGLREVLKHLKLQKLKCIIISPNCEKIQSKGGLDDTLQTIISHACEQNVPFVFALNRKALGRCLNKAVPVSVVGVFSYDGAQDHFHKLCELTVQARQAYKDMIAAAQEQQSETEAGKN 499

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: OCA50500.1 (hypothetical protein XENTR_v90002375mg [Xenopus tropicalis])

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-16
Identity = 56/160 (35.00%), Postives = 96/160 (60.00%), Query Frame = 0

Query:  558 CTEELEED----IKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIER---SPALDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFR-------EVNRKARELLALHAQRQGRLEGGSD 704
            C++ L +D    + EL++ L+ FQ+R  LK+ AK K  RR+V GLREV++ ++ +K++ ++I+P+ E+      LD  +  I S A E +VP VF L+ + LG+CL K+V ++VVGV S +GA D F        +  +  ++++A   ++Q   E G +
Sbjct:  340 CSQVLSKDVDNCVMELLKELVRFQDRLFLKEPAKAKSKRRLVMGLREVLKHLKLQKLKCIIISPNCEKIQSKGGLDDTLQTIISHACEQNVPFVFALNRKALGRCLNKAVPVSVVGVFSYDGAQDHFHKLCELTVQARQAYKDMIAAAQEQQSETEAGKN 499

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: OCA50501.1 (hypothetical protein XENTR_v90002375mg [Xenopus tropicalis])

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-16
Identity = 56/160 (35.00%), Postives = 96/160 (60.00%), Query Frame = 0

Query:  558 CTEELEED----IKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIER---SPALDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFR-------EVNRKARELLALHAQRQGRLEGGSD 704
            C++ L +D    + EL++ L+ FQ+R  LK+ AK K  RR+V GLREV++ ++ +K++ ++I+P+ E+      LD  +  I S A E +VP VF L+ + LG+CL K+V ++VVGV S +GA D F        +  +  ++++A   ++Q   E G +
Sbjct:  350 CSQVLSKDVDNCVMELLKELVRFQDRLFLKEPAKAKSKRRLVMGLREVLKHLKLQKLKCIIISPNCEKIQSKGGLDDTLQTIISHACEQNVPFVFALNRKALGRCLNKAVPVSVVGVFSYDGAQDHFHKLCELTVQARQAYKDMIAAAQEQQSETEAGKN 509

[Close]

BLAST of NO06G04270 vs. NCBI_GenBank
Match: XP_012207901.1 (hypothetical protein SPRG_13658 [Saprolegnia parasitica CBS 223.65] >KDO21341.1 hypothetical protein SPRG_13658 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 97.1 bits (240), Expect = 3.000e-16
Identity = 54/130 (41.54%), Postives = 81/130 (62.31%), Query Frame = 0

Query:  561 ELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLREVMRGIRSRKIQFVVIAPDIERSPA---LDQEIAEIRSSAAENDVPVVFGLSGRRLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKAREL 688
            EL+  +  L+  LM  QERARL +  K KK RR+VFGLREV RG+++ K+  +++A D++   A   LD +I E+   A  N + VVF LS R+LGK + K++R++ VG+ S +GA D +  V +    L
Sbjct:  123 ELQVGVTALLGRLMQLQERARLTNPLKAKKTRRLVFGLREVKRGLKNLKVMCLLVAYDVDECAAEGGLDDKIVELIDLARANKITVVFALSKRKLGKAVLKTIRVSCVGIYSVDGANDMWTSVQKTVASL 252

The following BLAST results are available for this feature:

BLAST of NO06G04270 vs. NCBI_GenBank

BLAST of NO06G04270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
CBN78485.1	2.600e-20	34.92	SECIS binding protein 2 [Ectocarpus siliculosus]	[more]
XP_008611441.1	1.200e-17	43.08	hypothetical protein SDRG_07389 [Saprolegnia dicli...	[more]
XP_012209209.1	3.500e-17	42.31	hypothetical protein SPRG_14646 [Saprolegnia paras...	[more]
XP_010186238.1	6.000e-17	32.91	PREDICTED: selenocysteine insertion sequence-bindi...	[more]
KFP39178.1	1.800e-16	32.28	Selenocysteine insertion sequence-binding protein ...	[more]
XP_010128492.1	1.800e-16	32.28	PREDICTED: selenocysteine insertion sequence-bindi...	[more]
NP_001090731.1	2.300e-16	35.00	selenocysteine insertion sequence-binding protein ...	[more]
OCA50500.1	2.300e-16	35.00	hypothetical protein XENTR_v90002375mg [Xenopus tr...	[more]
OCA50501.1	2.300e-16	35.00	hypothetical protein XENTR_v90002375mg [Xenopus tr...	[more]
XP_012207901.1	3.000e-16	41.54	hypothetical protein SPRG_13658 [Saprolegnia paras...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR049	ncniR049	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000040	NSK000040	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G04270.1	NO06G04270.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|251469	gene_9601	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G04270.1	NO06G04270.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G04270 ID=NO06G04270|Name=NO06G04270|organism=Nannochloropsis oceanica|type=gene|length=6150bp
ATGGCGCTTCCAAGTGACATGCTCGAGGAAAGGGAGGAGGACCAGGACGA
GAATGAGgtaaggagggagaaggatgtccaggccctctctctcgctctgt
ctcccgcttcctcatttcacccacctccctacctccctccctccttccct
ccaccaccgcaacagCTCTATCAGCACCAGCACCAGCATCAGCATCATCA
GCACCCTCCCCAAGCTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTGCTGCGCCGCTTCCGTCGTCCTCCACGCGTTCGCCGGGACC
GGTTTCAGTGCCGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAAGCGC
AGGAGGGAGGGGGAGTGGCTTCTCCTCCCCTGCCTCCCTCGCCTACTCAT
CGGCGTCGGTGCTTCTGGCACAGATGGAGGAGGAGGAGCTGATCGAGATA
GGTCTCAACGTGCAGACACTCGCGGAACTTTTCGGGACGgtgcgtcctgc
ctccctccctccctccctccctccctcccgccttcggtcggtgggagatg
gaaccatccttcccatctccatgaccgcggctctttaattttccttcttt
ccctccctccctccctctgtccctccctccctccttccctccctcccccc
ctatctctctcccagGTCCTCTCTGTTCGCATCGTCCAAGAGCGGGAGGT
TCACAAACATGTCTTCCCGTCCCATCCCTGCCCTGACACTgtacgtccct
ccctcactccctccctctctccctccctccctccctctctccttccctcc
acccacttctccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctccctccttacgcagGATGAACCACGGATCCCGCC
GGATCAAGTGCGTTTGCCAGGGGACGTAGTCGTCGTATTCTCCTCCCATC
ATGAGGCGTGTGCGGCCGTCGCTGGCCTGGGGGGGATGATCGTGCAAGgt
acggccctccctccttccctccctccctccttccctccttccctccctct
ctccctcaccccccctccctctttccttttgttcgattttttctctgatt
tttctttcgttcaatcttcttcttactctctctctctgcctctcccttcc
cccctccctccctccctcctcctacagGCACGCCTCTCCGTGTCTCTGGG
CCCTCCTCCTCCATCGGTCTCGTCACCCCCCCCTCCCTCCTCCCTCCCCT
CCTCTCCTCCTTCCCTTCCTCCTCCCCGCCCTCGCCGGCACCAGCCGAGC
CGGGAAGTAAGGGAGAAGGACGGCCTCCTCCCTCCTCCTCCTCCTCCGAT
GCCTCTTCCTTTCCTTCTTTCTCTTCGAGGGAGGGAGGGAGGGATGGAGG
GAGGGAGGGAGGGGGAGGTCGCCTAGCCCCTCCAGAGGCCTCATGGCCAG
GTCGGGCGTTCTCTGATGGAGCAGGGGATACGTTGgtagggaggaaggga
aggagggagggagggaataagggagggagagagggagggagggagggagg
gagggaggggaggggggtttgcttgtgtgtgggccaaccgtccactcgtc
tgattgttttttcccctctctcagcctcctccttcccctccctccctccc
tccctccctccctcgcttccttccttcctcggccgtctctccccccccct
ttcaccccccttcccccccctcttccctccctccctccctctcttcttcg
gccttctttttgtcgcagGTTTGTCTGCCGGGCTTGGTGGACGCAGGCAG
TTTAAGCGACCCGGAGGAGCGGGAGGAGATCTTGAGGGACCTCGTGGACC
TATGTCAGgtagatagggagagtgggagggagggagggagggagagaagg
gagttcttgtgtgtttctctactgtgatcccatccttgctcactgtcttg
tatgtttcaatattgtttcgggggtcgatcgtttatatttctcatttgtt
catttctcatttattcattacacatcatttattccttatttatcatttat
tcataatttatcatttattcactatttatctattcatcgggcgatgcttg
gtgtgcagGCATACGGGCGCGTCGTGGCCCTGCGTGTCAACACCAGCGGT
TGTGCCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTCCTCGCCCTC
CTCCATGCCCTCCTCCGTCTCCTCTGCTTCCCTTATCCTGGAATTAGGCT
CGGTACTGGTGAGGTATAGCACGGCAGCAGAGGCTGCGAGGGCAGTGTTG
GGCCTCCAGGCACGCACCGTTCAGGGGCAGAGAGTGAGGGCCTTCCTGgt
aaggaagggccgagggagggggggagggagggatggagggtgtttcaaga
atggaacaacgcatggttcctcgtcctcatccgcctcaccctccccccct
tcctcccttcctccctcccttcagTGGCGTCCTCAACAGCTAAATATGGG
CCAGGCATCCCTCCCCCCCTCCCTTCATCCCTCCCTCCCCGCCTCCCTCT
CTGCCGCCTCCTCCGTCTCCTCTTCCTCCTCCACCACCACCTTCTCTCAC
CAGCAGGACCATCAGCATCAGCAGCAGCTGGAGGAGGAACGGCCGCACTC
TTTCCCTCCTTACGGTCACAGCACTTTCCCCCCCTCCCTTCCCTCCCTCC
CTGAGCCCCCTCTACCCTCGTCTTCCCCCTCTTCCCAGCCCTCCTTCCCT
CCCTCCTCCTCCTCCTCCTCCTCCTCTACCATCCGTTTCCCGCCAAAATA
CCGAGAAGCGTCTCACCTGCCCAAGCTGCGCGGAGGCGGGAGAGAGCAAC
ACGGCGAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGAACCTCCGTCCCGG
ACGCATATGACCGTGCGAGGAGATGCAGTTCTGTGCACGGAGGAATTGGA
GGAGGACATCAAGgtggggcgggagggaaggagggagggaggaagggagg
aaggggagcgggaggacggaatgcacggcacttgtaaatggcaggacacc
ctcatatctttccctctttccatccctccttccctccttgtacagGAGCT
CATCCGTTTGCTCATGTCATTTCAAGAGAGGGCACGACTGAAGGATGCAG
CCAAGGGGAAGAAAGTTCGACGCATGGTCTTTGGGCTCAGAGAGgtactt
cccttcttccttccctccctccctccctccctccttccctccttcccccc
ctccttctctacggccctgttttcgtccctcgatcgttcagacacacatg
ctctcttccttctctcttcctttcgtcgtgcgtggctttctcccctttct
tgccagcagctgccatgcccctgacagaacaatttcctcaccgcgcgccg
ccatccctccctccctcctttcctcgcttctccctcccttagGTCATGCG
CGGCATCCGCAGCCGCAAGATCCAATTTGTCGTTATTGCCCCGGATATAG
AACGCTCTCCCGCCCTCGACCAGGAAATAGCCGAGATCAGgtcccttcct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
cttccagtctcttcgtcttgtcggaccactgatccttttgacctaatgaa
aaaaccatcaccgccacagactcacccctcccctcccttccctccctccc
ttccctccctccctccctccctccctcagGTCCTCGGCGGCGGAGAACGA
CGTTCCGGTCGTCTTCGGTTTGTCGGGCCGGCGGCTGGGCAAGTGTTTGG
GGAAGAGTGTGAGGATCACGGTGGTGGGCGTGCTCTCGGCCGAAGGGGCA
TTCGATCGATTTAGgtggggagggagggagggagggagggagggagggag
ggagggagggagggagggagggagggagggagggagggagggagggaggg
agggagggagggagagagggagggagggagggagggagggagggagggag
ggaaggagggaggacaagagccagtgagagggtttaatcttagacaaagg
aatttctgcagcgcccattactttattggctttcaaaatgtctcatattt
ttcagtcttttaagtcttccttcctctctccctctctccctttctccctg
gaccttcagAGAGGTGAACCGCAAAGCACGCGAGCTCCTTGCTCTACACG
CACAGCGACAGGGAAGGCTGGAGGGAGGGAGCGATGTTGGGATGCACAAT
GCCACCCCCGCCCTTCCTTTCTTTCAGTCATCCTCCTCCTCCTCCTCCTC
CGCTTCCTCCCCTCCTCCTTCCCGGCCCTTGACCGACATCGCGGGACACC
CAAATTCCTCCTTTCCCAGGCTCGAGCACCTCCTGGGAGGGCCATCCTCC
CTCATAGGCGACAAGGACGAAAAGAGAGGAAGAGCCACCAAGGGCGACAG
GGGCGGCAGCGATGGAGGCAGCGGCAGCATGTGCCTTCTTTCTTCTCTAT
CGACGTATACCTCCTCTGATCCTCCCATCCCTCCTTCGTTGCTTTCAGTG
CCTTTGCCGTCGACGTTGCTTCAGGACCAACAGCGCCGAGAACTGCCACA
GCAGTACTTCCACCACCACCACCATCAGCAGCAGCAGGAGCAGGCGTTGG
CCGGGGATTTGGGGTCTCTTGAAGACGGAGGGTCGGGGAGAGAAAAGGGA
ATGGGAGGGCAAAGAGAAGGAGGAGGGGGAGGATGGAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGATGGGAAGGCTGAGAAGTGGCCTTATAGGTGCGTC
GTCTTGTCAGCCCATCTTGCTTAATGCATGCATTTGTTGAATAAGCACGT
AATGGTAGATAAGCTTGAGGGCAGAAAGGATGAGTGGGGATGGGAGCCTC
TGGGGAAGAAAAAGTGGAGTGCGGCACTTTTCGTCGGTTAGAGTATGCTT
TAAGTTTCATAATCATGTCTCATCTTGTCAGGGGTGGGGGAATAGTAGAG
ATCGTGGGCTGGCTCTAGCATTAAATGTACATGTATTTTTGATTGTTTTC
ATTTCATCTCCAGCTCTTTTTTTTTGTATCTTTGAAAAGCCCTCGAAGAG
GGGAAAGAGGAGTCAGCGCATGTTCAATTGATTTGTAGTCATTTTTCCAG
TGTTTCCCAAAATTTAGAGAGTAGATTTAAAAAGGTCCATGGCATGATGC
ATGGCATGGAATCACAAAGTTTAGATTTTAGCAATGTTTTAGCATTTTCA
AAGGGAGGGGGGGCGTGGCATGACACGTCAATGATTTTGATTGTTTGGTT
GACAAAGATGACTCGGCGCATCACGAATAGGACTCACTAGTGGACTCTCT
TCAAGACAATTCTATGTCCGCTGGAGAAGTGCAAGGGAAAATGAAATCGG
GCGTAAATACATGGCCGACATAGACACGGCAGCCAAAGCAAGCACGCAAG
ATGGAGCCCTTTCACTTCTTCATTTTTGTCTCCCCCCACGCAGCAGAATA
TCCTTGTGTAATTTCCCCTTTTTTATACTCCATGTCCATCTTTCACAAAA
ACAAGTGCGGTAACAATCGAAATACCGCGTTTTACGAGTCTATTTGTTGG
ATGTGCGTGCGGGGAGGTGTTATTGTGCCTGTAGCTGCTTTCCAAATTTA
AGTGCTTCGGATGTTCACGTCAAGTTTTTGGAAGAACCACGAGAAGAATG
GGAGCCACATTGCCTTGATACTCGTTTTTGAATCCAATGAATGCACGAAA
GATCAGTAGACAGGTTTCGCCTAATTGCGACTATACAGGCAGACCCATAC
ACAAGCAGGCAGGCATAAGTCTATATATCCTCCAAAGCACAAATGATTGG
ACAAGTAAGGGACGCGGGAAGTGTGAATGGTTAGTGAGAGAGCACAAAAA
GGAATGTGTGTGCCTTCAAGACATCAGGCAGAGCAGAGACATGCACAACT
CTTTTAACAAAGTGGCACCACCACCATCTGCGCAGATACTTATAAAAACA
ACGTGAAACAATTAATGTTGGATTGAGAGCGATGAGAAGAGTGAACGCCC
AAGGAGAAGGGGATAGACAAGAGAGAAGGGAGAATTATAAGGATATTTCA
CCGTGCAGTAACTTCGGGAAAGAGAGCAGCATTATGAAAGAAGTGTTTCA

protein sequence of NO06G04270.1

>NO06G04270.1-protein ID=NO06G04270.1-protein|Name=NO06G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=884bp
MALPSDMLEEREEDQDENELYQHQHQHQHHQHPPQALPSLPPSLPPSLPP
CCAASVVLHAFAGTGFSAGGGGGGGGGGGSAGGRGSGFSSPASLAYSSAS
VLLAQMEEEELIEIGLNVQTLAELFGTVLSVRIVQEREVHKHVFPSHPCP
DTDEPRIPPDQVRLPGDVVVVFSSHHEACAAVAGLGGMIVQGTPLRVSGP
SSSIGLVTPPSLLPPLLSSFPSSSPPSPAPAEPGSKGEGRPPPSSSSSDA
SSFPSFSSREGGRDGGREGGGGRLAPPEASWPGRAFSDGAGDTLVCLPGL
VDAGSLSDPEEREEILRDLVDLCQAYGRVVALRVNTSGCAPPSFPPSFPP
SSSPSSMPSSVSSASLILELGSVLVRYSTAAEAARAVLGLQARTVQGQRV
RAFLWRPQQLNMGQASLPPSLHPSLPASLSAASSVSSSSSTTTFSHQQDH
QHQQQLEEERPHSFPPYGHSTFPPSLPSLPEPPLPSSSPSSQPSFPPSSS
SSSSSTIRFPPKYREASHLPKLRGGGREQHGEGEGGREGGEEPPSRTHMT
VRGDAVLCTEELEEDIKELIRLLMSFQERARLKDAAKGKKVRRMVFGLRE
VMRGIRSRKIQFVVIAPDIERSPALDQEIAEIRSSAAENDVPVVFGLSGR
RLGKCLGKSVRITVVGVLSAEGAFDRFREVNRKARELLALHAQRQGRLEG
GSDVGMHNATPALPFFQSSSSSSSSASSPPPSRPLTDIAGHPNSSFPRLE
HLLGGPSSLIGDKDEKRGRATKGDRGGSDGGSGSMCLLSSLSTYTSSDPP
IPPSLLSVPLPSTLLQDQQRRELPQQYFHHHHHQQQQEQALAGDLGSLED
GGSGREKGMGGQREGGGGGWRGGGGGGGGGWEG*

Synonyms

Publications