NO06G03750, NO06G03750 (gene) Nannochloropsis oceanica

Overview
NameNO06G03750
Unique NameNO06G03750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2710
Alignment locationchr6:1035123..1037832 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna (Uracil-5-)-methyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1035123..1037832 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0016740transferase activity
GO:0008173RNA methyltransferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0032259methylation
GO:0006396RNA processing
GO:0001510RNA methylation
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR010280U5_MeTrfase_fam
Homology
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_008908296.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica INRA-310] >ETN06327.1 23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica INRA-310] >KUF95705.1 hypothetical protein AM588_10006425 [Phytophthora nicotianae] >KUG00795.1 tRNA (Uracil-5-)-methyltransferase [Phytophthora nicotianae])

HSP 1 Score: 273.5 bits (698), Expect = 2.300e-69
Identity = 186/528 (35.23%), Postives = 248/528 (46.97%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            + I  SP  EGYRNK EF+ G + E +P VGFRLG FR+G++ V   +  C+ +      V   +Q  +     +PVY+     GVWR +TVR+S  TG+ +V V    K + +     E+R  V+ L  +                               L   S+S                                       ITS+F+  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GVG+                              V+GIE+C+ A +DA+VNA  N VQN +F+ SKAEDV+  +L   RD    HL+   A                                     DPPR GLH   LRALR CP V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F PV A+PVDMFPHT HCE+I+VF+R
Sbjct:  446 DSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPD-ECINVSKEMKAVCAVMQN-ILETSDVPVYNVTTKSGVWRVLTVRQSVNTGELMVMVQVNPKDKTD-----EERAAVKDLVVK------------------------------RLTDESNSFK-------------------------------------ITSIFMQEYEGLSAPSDNDPVEHVYGNTKLEEYLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------KGVGK------------------------------VVGIEICKPATDDAKVNAVLNDVQNVSFVNSKAEDVMKDLLHKKRDESEQHLNRVVA-----------------------------------IVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDR 811          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: ETP40773.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica P10297])

HSP 1 Score: 273.5 bits (698), Expect = 2.300e-69
Identity = 186/528 (35.23%), Postives = 248/528 (46.97%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            + I  SP  EGYRNK EF+ G + E +P VGFRLG FR+G++ V   +  C+ +      V   +Q  +     +PVY+     GVWR +TVR+S  TG+ +V V    K + +     E+R  V+ L  +                               L   S+S                                       ITS+F+  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GVG+                              V+GIE+C+ A +DA+VNA  N VQN +F+ SKAEDV+  +L   RD    HL+   A                                     DPPR GLH   LRALR CP V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F PV A+PVDMFPHT HCE+I+VF+R
Sbjct:  446 DSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPD-ECINVSKEMKAVCAVMQN-ILETSDVPVYNVTTKSGVWRVLTVRQSVNTGELMVMVQVNPKDKTD-----EERAAVKDLVVK------------------------------RLTDESNSFK-------------------------------------ITSIFMQEYEGLSAPSDNDPVEHVYGNTKLEEYLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------KGVGK------------------------------VVGIEICKPATDDAKVNAVLNDVQNVSFVNSKAEDVMKDLLHKKRDESEQHLNRVVA-----------------------------------IVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDR 811          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: ETK82948.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica] >ETL36324.1 23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica] >ETP12635.1 23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica CJ01A1])

HSP 1 Score: 273.1 bits (697), Expect = 3.000e-69
Identity = 185/528 (35.04%), Postives = 248/528 (46.97%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            + I  SP  EGYRNK EF+ G + E +P VGFRLG FR+G++ V   +  C+ +      V   +Q  +     +PVY+     GVWR +TVR+S  TG+ +V V    K + +     E+R  V+ L  +                               L   S+S                                       ITS+F+  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GVG+                              V+GIE+C+ A +DA+VNA  N +QN +F+ SKAEDV+  +L   RD    HL+   A                                     DPPR GLH   LRALR CP V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F PV A+PVDMFPHT HCE+I+VF+R
Sbjct:  454 DSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPD-ECINVSKEMKAVCAVMQN-ILETSDVPVYNVTTKSGVWRVLTVRQSVNTGELMVMVQVNPKDKTD-----EERAAVKDLVVK------------------------------RLTDESNSFK-------------------------------------ITSIFMQEYEGLSAPSDNDPVEHVYGNTKLEEYLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------KGVGK------------------------------VVGIEICKPATDDAKVNAVLNDIQNVSFVNSKAEDVMKDLLHKKRDESEQHLNRVVA-----------------------------------IVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDR 819          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: ETO71542.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica P1976])

HSP 1 Score: 273.1 bits (697), Expect = 3.000e-69
Identity = 186/528 (35.23%), Postives = 248/528 (46.97%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            + I  SP  EGYRNK EF+ G + E +P VGFRLG FR+G++ V   +  C+ +      V   +Q  +     +PVY+     GVWR +TVR+S  TG+ +V V    K + +     E+R  V+ L  +                               L   S+S                                       ITS+F+  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GVG+                              V+GIE+C+ A +DA+VNA  N VQN +F+ SKAEDV+  +L   RD    HL+   A                                     DPPR GLH   LRALR CP V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F PV A+PVDMFPHT HCE+I+VF+R
Sbjct:  454 DSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPD-ECINVSKEMKAVCAVMQN-ILETSDVPVYNVTTKSGVWRVLTVRQSVNTGKLMVMVQVNPKDKTD-----EERAAVKDLVVK------------------------------RLTDESNSFK-------------------------------------ITSIFMQEYEGLSAPSDNDPVEHVYGNTKLEEYLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------KGVGK------------------------------VVGIEICKPATDDAKVNAVLNDVQNVSFVNSKAEDVMKDLLHKKRDESEQHLNRVVA-----------------------------------IVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDR 819          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: OWZ15341.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora megakarya])

HSP 1 Score: 271.2 bits (692), Expect = 1.200e-68
Identity = 191/532 (35.90%), Postives = 248/532 (46.62%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEE 844
            + I  SP  EGYRNK EFT G + E +P +GFRLG FR+G++ V   +  C+ +      V   +Q  V     +PVY+     GVWR +TVR+S  T   +V                    MV+   A   P      E R A     K+ VV              +T   NP                                ITS+F+  YEGLS P+ NDP+ H +G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GVG+                              V+GIE+C+ A +DA VNA+ N VQN  F+ SKAEDV+  +L   RD    HL+   A                                     DPPR GLH   LRALR+CP V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F PV A PVDMFPHT+HCE+I+VF+R + E
Sbjct:  422 DSIHASPVTEGYRNKCEFTFGFDKEDKPCLGFRLGLFREGSVVVSKPD-ECINVSNEMKAVCAVMQNIV-ETSDVPVYNVNTKAGVWRVLTVRQSVNTDDLMV--------------------MVQVNPANKTP------EERAA----VKDLVV------------KRLTDASNPFK------------------------------ITSIFMQEYEGLSAPSDNDPVEHAFGKTKLEEHLLGMRFSVSPNAFFQVNTHGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------KGVGK------------------------------VVGIEICKPATDDAEVNATLNDVQNVTFVNSKAEDVMKDLLRKKRDENEKHLNRVVA-----------------------------------IVDPPRAGLHHQVLRALRSCPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAAPVDMFPHTQHCEMIIVFDRVKAE 791          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_009525016.1 (hypothetical protein PHYSODRAFT_496969 [Phytophthora sojae] >EGZ22299.1 hypothetical protein PHYSODRAFT_496969 [Phytophthora sojae])

HSP 1 Score: 268.9 bits (686), Expect = 5.700e-68
Identity = 187/532 (35.15%), Postives = 246/532 (46.24%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEE 844
            + I  SP  EGYRNK EF+ G + E +P VGFRLG FR+G++ V   +  CV +      V   +Q  V     L VYD     GVWR +TVR+S  TG+ +  V                                    + N  G+  +E      LL       + +T + N                                 ITS ++  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GV +                              V+GIE+C+ A +DA VNA  N V+N +FI SKAEDV+  +L   R+    HL+   A                                     DPPR GLH + LRALR CP VQR+VYVSCNPT SL RDAV LCGP ++ ++G +F+PV A+PVDMFPHT HCE+I+VFER + E
Sbjct:  443 DSIHASPVTEGYRNKCEFSFGFDKENKPCVGFRLGLFREGSVVVSKPD-ECVNVSSEMKAVCAVMQNIVETSEIL-VYDVTTKSGVWRVLTVRQSVNTGELMAMV------------------------------------QVNPAGKTPEERAALKDLLV------ERLTDENNSFK------------------------------ITSFYIQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFDVSPNAFFQVNTRGAEELYSLVKQHADADEH---------TLLYDVCCGTGTIGICAS--------------KGVAK------------------------------VVGIEICKPATDDAEVNAVLNDVKNVSFINSKAEDVMKDLLRRKREESEKHLNRVVA-----------------------------------IVDPPRAGLHHNVLRALRACPPVQRIVYVSCNPTNSLVRDAVMLCGPSTKGMQGEAFQPVHAVPVDMFPHTPHCEMIIVFERVKTE 812          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: POM73950.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora palmivora var. palmivora])

HSP 1 Score: 265.4 bits (677), Expect = 6.400e-67
Identity = 182/532 (34.21%), Postives = 243/532 (45.68%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEE 844
            + I  SP  EGYRNK EF+ G + E +P +GFRLG FR+G++ V   +  C+ +      V   +Q  +     +PVY+     GVWR +TVR+S  T + +V                    MV+   A   P                 EE      L     T +  +                                     ITS+++  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GVG+                              V+GIE+C+ A +DA VNA  N V+N  F+ SKAEDV+  +L   RD    HL+   A                                     DPPR GLH   LRALR CP V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F PV A+PVDMFPHT HCE+I+VF+R + E
Sbjct:  435 DSIHASPVTEGYRNKCEFSFGFDNEDKPCIGFRLGLFREGSVVVSKPD-DCINVSNEMKAVCAVMQN-ILETSDVPVYNVNTKTGVWRVLTVRQSVNTDELMV--------------------MVQVNPANKTP-----------------EERAAVKDLVVKRLTDEGNSFK-----------------------------------ITSIYMQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------KGVGK------------------------------VVGIEICKPATDDAEVNAVLNDVKNVTFVNSKAEDVMKDLLRKKRDENEKHLNRVVA-----------------------------------IVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDRVKAE 804          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_024582710.1 (23s rrna (uracil-5-)-methyltransferase [Plasmopara halstedii] >CEG46341.1 23s rrna (uracil-5-)-methyltransferase [Plasmopara halstedii])

HSP 1 Score: 260.4 bits (664), Expect = 2.000e-65
Identity = 176/529 (33.27%), Postives = 246/529 (46.50%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEE 844
            + I  SP  EGYRNK EF+ G +   +P VGFRLG FR+G++ V   +  C+ +      V   +Q  +   G +PVYD     GVWR +TVR+S  T + +V     ++    +  + E+  + E +  R                                      +T ++N                                 ITS+++  YEGLS P+ ND + H++G   +EE LLG++F ISP+AFFQVNT GAE LY  V   +  NE           ++ DVCCGTGTIGIC +              +GVGE                              ++GIE C+ A +DA VNA  N V+N +F+ SKAE V+ ++L+ +                     E +  L  ++                DPPR GLH   LRALR C  V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F+PV A+PVDMFPHT HCE+I+VF+R E E
Sbjct:  444 DSIHASPVTEGYRNKCEFSFGFDKNNKPCVGFRLGLFREGSVVVSKPD-ECINVSKDMKAVCAVMQVILETSG-VPVYDVHTKTGVWRVLTVRQSINTEELMV----IVQVNPAQKTLEERAAVKELIVKR--------------------------------------LTDEENSFR------------------------------ITSIYVQEYEGLSAPSDNDSVEHVFGKTKLEEHLLGMRFSISPNAFFQVNTLGAEKLYTLVKQHANANEH---------TMLYDVCCGTGTIGICLS--------------QGVGE------------------------------IVGIETCKPATDDAEVNAELNNVKNVSFVNSKAEMVMKNLLQQKRG-------------------ENKQQLDRVVA-------------IVDPPRAGLHHQVLRALRACAPVERIVYVSCNPTNSLIRDAVTLCGPNTKSIQGQAFKPVYAVPVDMFPHTPHCEMIIVFDRVEAE 813          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: CBJ25817.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 255.4 bits (651), Expect = 6.600e-64
Identity = 221/750 (29.47%), Postives = 313/750 (41.73%), Query Frame = 0
Query:   82 PAAGQEEVLRLVVSGFQKFMNAKEVTKIMKHANIEYESLKRPMSTTVAILRFNSVAQRDKAAADLVGVNVKGRAVRTMVPVDEDRRIFNKQGQDRRGAKRGVGHEGGRDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVEIVKTLAEVVTPLLSL-PYAEQLRQKEKDIALDCVGKMFREIKKSYEQKNKQLKR---AHQLGEGGSSDAARHVRAPDWA--WGNRYAKEVFVTEPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRS--QRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSS-----TKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVK 819
            PA G EE+ ++ V    K     +  KI+K+ +++Y+  K+  S T   L F +  QR  A   L  + V  R    M  V   ++  N  G   RG KR    +G  D RG                                    KT+A+    L  +  Y EQL  KEK +  D   K+   I+  ++++ ++ KR     Q G GG+ +    +R P W   +  R     F   PI P+P  EGYRNK EFT+  + +G  T GFR G F+ G          C  +     ++   + AF+ R    P+YD    +GVWR +  RRS   + G  +V +     K  EE W +E+  +V+ L+A              A GEEG                                                        T + SL++  Y GLS+P+   P+  LWG + +EE+LLGL+F ISP++FFQVNT GAE LY+ V++     ++          ++LDVCCG GTIGICAA                                  +G  KQ         V G ++C  A+EDAR NA  NG+ N  F+C KAE V+   + +    H +S       A +E   A  +    AT                     DPPR+G+H  CLR++R    ++RLVYVSCNPTKSL  DA  LC P S+   G+ FRPVK
Sbjct:   67 PAPG-EELTKVTVFNVGKHATLAQFEKILKNNSVQYKRAKKTPSITHGTLTFETAEQRAVAMEQLRKI-VGARGGELMFAVLARQKQNNDIG---RGNKRS-ARDGDDDGRGGDASKRPRQEAER-----------------------KTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPIVIRNEWDKRFREWKRNQGMKQGGGGGTLNKPAELRCPAWCRMFKRRDGTVPFDVSPIVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQVHGDMKKLCVQMDAFM-RSSPFPLYDDATKKGVWRLLVARRSAADKEGMAMVVINPTDVKDTEE-WKKEEERLVKELSA-------------GAQGEEG--------------------------------------------------------TKLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGDD---------AVVLDVCCGAGTIGICAAA---------------------------------AGGAKQ---------VYGSDICLPAIEDARRNALANGIDNCEFVCGKAEAVVAGQIANAFKQHKASLGAPAAGAGEEGSTASPAAAPAAT------------GELKFAAIVDPPRSGVHAKCLRSIRGTKAIKRLVYVSCNPTKSLAADATILCTPVSKSTTGLPFRPVK 653          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: CCI47583.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 243.4 bits (620), Expect = 2.600e-60
Identity = 167/530 (31.51%), Postives = 238/530 (44.91%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLS-NPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEE 844
            E I  SP  EGYRNK EFT+G + EG P VGFRLG F++G++ V    G C+ + P+  RV K +Q  V      P+++ +  EGVW+ +TVR S RT Q +V     +    +      Q+ ++                          +++VGA                                                   +TS+++  Y+G S + + N+ L  L G  ++ E L  L F ISP AFFQVNT  AE+LY KV +  +          ++  L+ DVCCGTGTIG+C A    E                                            ++GIEMC++A EDA+ NA  N + N +F+  KAE+V+  +L+              +A++  ++  V                        DPPR GLH   LRALR C  V+R+VYVSCNPT+SL +D+  LCGP +  L G +FRPV+A  VDMFPHT HCE+++VFERG  +
Sbjct:  422 ESIQASPETEGYRNKCEFTIGCDEEGHPCVGFRLGLFKNGSVTV-SKPGNCINVSPIMKRVCKVVQDMVIL-SEFPIFNVESREGVWKQLTVRHSARTQQLMVIFQLDLSSLDDSQQTTLQKFII--------------------------DKLVGA-------------------------------------------------LDVTSVYMQAYQGRSDSSDRNEALKLLRGNPFITEKLFDLDFNISPEAFFQVNTNAAEILYAKVREMIK---------VDKNTLLYDVCCGTGTIGLCCAKDAGE--------------------------------------------IIGIEMCKAATEDAKRNAILNHIDNISFVNGKAEEVMKDILQ----------TTQQDAQINAVTVVV------------------------DPPRAGLHFKVLRALRACSPVRRIVYVSCNPTQSLIQDSSMLCGPKTSALVGEAFRPVRAAAVDMFPHTPHCEMVVVFERGSSQ 787          
The following BLAST results are available for this feature:
BLAST of NO06G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008908296.12.300e-6935.2323S rRNA (uracil-5-)-methyltransferase RumA [Phyto... [more]
ETP40773.12.300e-6935.2323S rRNA (uracil-5-)-methyltransferase RumA [Phyto... [more]
ETK82948.13.000e-6935.0423S rRNA (uracil-5-)-methyltransferase RumA [Phyto... [more]
ETO71542.13.000e-6935.2323S rRNA (uracil-5-)-methyltransferase RumA [Phyto... [more]
OWZ15341.11.200e-6835.9023S rRNA (uracil-5-)-methyltransferase RumA [Phyto... [more]
XP_009525016.15.700e-6835.15hypothetical protein PHYSODRAFT_496969 [Phytophtho... [more]
POM73950.16.400e-6734.2123S rRNA (uracil-5-)-methyltransferase RumA [Phyto... [more]
XP_024582710.12.000e-6533.2723s rrna (uracil-5-)-methyltransferase [Plasmopara... [more]
CBJ25817.16.600e-6429.47conserved unknown protein [Ectocarpus siliculosus][more]
CCI47583.12.600e-6031.51unnamed protein product [Albugo candida][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000101NSK000101Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03750.1NO06G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558298gene_6704Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100031g21gene4156Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03750.1NO06G03750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03750 ID=NO06G03750|Name=NO06G03750|organism=Nannochloropsis oceanica|type=gene|length=2710bp
CCTCATCTACGCCCTACATGTACCCATGGACTTAATGGATGCGGACGACG
TCAAATTTGCCACAGCCGACACATCTGCGGCTTCCGTGGAGCGTGCGGCA
GTCTCTCCAGCCACCACCGCCCCTCCCACCTCCCGTCCCACCACTGCTCA
AAATACTCCATGCGCCTGTGCCAGCGACGCTAATACTACTAATGTGGCTT
CTGCTGCGGCCCTTGGTGTTGCTCCTCAAAGCCAAGCCTCAGTCTCCGCT
ACCACAAGCATCCCCACTCCTGCCGCAGGTCAAGAAGAGGTACTCCGTCT
CGTGGTCTCTGGCTTCCAAAAGTTCATGAATGCCAAGGAGGTCACCAAGA
TCATGAAGCACGCCAACATTGAGTATGAGTCCTTGAAACGGCCCATGTCC
ACGACCGTTGCTATCCTCCGCTTTAACAGCGTGGCGCAACGTGACAAGGC
CGCAGCAGATTTGGTGGGTGTAAACGTTAAGGGACGGGCAGTGCGAACGA
TGGTGCCTGTAGACGAGGATCGGCGCATATTCAACAAGCAGGGTCAAGAC
CGGCGGGGGGCAAAGCGTGGGGTAGGGCACGAGGGAGGAAGAGACGACCG
AGGCGAAAAGCGTGCCCGGGGTGGGGGTGCGGAAGACGGAGATGGAGGAA
GAGGAGGAGGAGGAGGAGGAGGTAGTGGTGGAGATGAAGACGAGGGGCAC
GTGGAGATCGTCAAAACGCTTGCCGAAGTAGTGACCCCGCTTTTGAGCTT
GCCGTACGCTGAGCAGCTCCGGCAGAAGGAGAAGGACATTGCCTTGGACT
GTGTGGGGAAGATGTTTCGGGAAATCAAGAAGTCCTACGAACAAAAAAAC
AAGCAACTAAAACGCGCTCACCAACTAGGGGAAGGCGGCTCCTCCGACGC
TGCCCGGCATGTCCGTGCTCCTGATTGGGCATGGGGAAATAGATACGCAA
AGGAAGTATTTGTGACGGAGCCTATTTCTCCTTCTCCTGCTGTGGAGGGG
TACAGAAATAAGAACGAATTTACTGTGGGCCGAAACGTGGAGGGACAACC
GACGGTTGGCTTCCGCTTGGGCACATTCAGGGACGGAAATATGCACGTCG
GAGGGTTGGAGGGAGGGTGTGTGTTGCTCGACCCGGTGACACTGAGAGTG
GCCAAGGCGCTGCAAGCCTTTGTCAGGCGTCCGGGGGCGCTGCCTGTGTA
CGATCAGCAGAAGCATGAGGGGGTATGGAGGTACGTTACGGTGAGGAGGA
GTCAGAGAACGGGGCAGTGCTTGGTATGGGTGTGTGCGGCAATCAAGAAG
CAGGGAGAGGAGGCGTGGATGAGGGAGCAGAGGGAAATGGTCGAATACCT
GACGGCACGGACTCGGCCTCTGTTGGAGGGGGGGAAGGAGCGAAGGAATG
CAGGAGGGGAAGAAGGAAAAGAAGAAGTGGTTGGAGCTCCTCTACTTGCC
ACTCTTCCATCTACCAGCGATAGCGTAACGATAGATAAGAATCCTGCTTC
TGCTGCTGCTAGTGCTCTTCTTCCTTCCCCTGCCACCTCTACCACCTTCT
CCTCTTCCTCCTCCTCGTCCTCCCCCTCCTGCTGGACAGGCATCACCTCA
CTCTTTCTCGGACCTTACGAGGGCTTGAGCAACCCCAATGCTAACGACCC
TCTGGTTCACCTGTGGGGGTTGAAATATATGGAGGAAGACTTGCTGGGTT
TGAAATTTCGAATTTCCCCGCACGCGTTTTTCCAAGTCAATACCGCTGGG
GCCGAGGTGCTGTATCAGAAAGTGGTTGACGAAAGTCGAAGGAATGAAGA
AGAATGGGAGAAAGAAGAGGAGCGGCCGAAGTTGATTTTAGACGTGTGTT
GCGGCACAGGGACCATTGGCATTTGTGCGGCAACGCAGCTGGAGGAGAAA
AAGATGGAGGAGGAGGTGGTAGTGGAGGGAGTGGGGGAGGAGGAGAAAAA
TATAATCGCCAGAATAAGCGGTGAAGACGATCCCTCGGGTGCCACAAAAC
AACTCGAGGAACAGGAGAGAAAAAGCCTAGTCTTAGGCATCGAAATGTGC
GAATCAGCGGTTGAAGACGCGCGGGTGAATGCATCACGGAATGGGGTTCA
GAACGCCGCCTTTATCTGCTCCAAGGCGGAAGATGTCCTCCTTAGTATGC
TTCGGGACCGGCCTTCCTCCCATCTCTCCAGCACTAAAGCTGCAGATGAA
GCACGCCTTGCGGGGCTCTCTCCCGAGGTTCGCGCCACTTTGCGTGAGAT
CATGACTGCGAGCAGCAGCAGTAGTAGTAGTAGTAGTGTGATTGCCATTG
TGGATCCTCCTCGAAATGGGCTCCACGTGGATTGTCTCCGGGCGTTGAGA
AACTGTCCACGGGTCCAACGGCTTGTGTACGTGTCGTGTAATCCCACCAA
GAGCCTGCCTCGTGACGCCGTGGCGTTGTGCGGTCCACCCTCTCAGAAAT
TGAAGGGGGTGTCATTTCGGCCCGTCAAAGCAATACCTGTTGACATGTTC
CCCCACACAAGGCACTGTGAAGTGATTATGGTGTTTGAGAGGGGAGAGGA
AGAGGCAGTGGAGGAAGAGGGGGATAAAGGCGTCAAGAAGGAGGGCGGGG
AAGGCGGGGCGGATGAAGAGGGCGTGTTGGAGGGGATTGTGACGAAGACG
CTGGTGGAGGAGGGAGAATAGAACATTTAATAAACTAATTAAGACAAATT
CAGTACAGGA
back to top

protein sequence of NO06G03750.1

>NO06G03750.1-protein ID=NO06G03750.1-protein|Name=NO06G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=882bp
MDLMDADDVKFATADTSAASVERAAVSPATTAPPTSRPTTAQNTPCACAS
DANTTNVASAAALGVAPQSQASVSATTSIPTPAAGQEEVLRLVVSGFQKF
MNAKEVTKIMKHANIEYESLKRPMSTTVAILRFNSVAQRDKAAADLVGVN
VKGRAVRTMVPVDEDRRIFNKQGQDRRGAKRGVGHEGGRDDRGEKRARGG
GAEDGDGGRGGGGGGGSGGDEDEGHVEIVKTLAEVVTPLLSLPYAEQLRQ
KEKDIALDCVGKMFREIKKSYEQKNKQLKRAHQLGEGGSSDAARHVRAPD
WAWGNRYAKEVFVTEPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGT
FRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGV
WRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLL
EGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPASAAASALLP
SPATSTTFSSSSSSSSPSCWTGITSLFLGPYEGLSNPNANDPLVHLWGLK
YMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEER
PKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGE
DDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSK
AEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTASSSSS
SSSSVIAIVDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVA
LCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEEAVEEEGD
KGVKKEGGEGGADEEGVLEGIVTKTLVEEGE*
back to top
Synonyms
Publications