NO06G03750, NO06G03750 (gene) Nannochloropsis oceanica

Overview
NameNO06G03750
Unique NameNO06G03750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2710
Alignment locationchr6:1035123..1037832 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna (Uracil-5-)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1035123..1037832 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0016740transferase activity
GO:0008173RNA methyltransferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0032259methylation
GO:0006396RNA processing
GO:0001510RNA methylation
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR010280U5_MeTrfase_fam
Homology
BLAST of NO06G03750 vs. NCBI_GenBank
Match: EWM26366.1 (trna (uracil-5-)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 767.3 bits (1980), Expect = 5.100e-218
Identity = 453/858 (52.80%), Postives = 538/858 (62.70%), Query Frame = 0
Query:   49 ASDANTTNVASAAA-----LGVAPQSQASVSATTSIPTPAAGQEEVLRLVVSGFQKFMNAKEVTKIMKHANIEYESLKRPMSTTVAILRFNSVAQRDKAAADLVGVNVKGRAVRTMVPVDEDRRIFNKQGQDRRGAKRGVGHEGGRDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVEIVKTLAEVVTPLLSLPYAEQLRQKEKDIALDCVGKMFREIKKSYEQKNKQLKRAHQLGEGGSSDAARHVRAPDWAWGNRYAKEVFVTEPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEG-----------------------GKERRNAGGEEGKEEVVGA------PLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDES-RRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVE---GVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLS---------------------STKAADEARLAGLSPEVRATLREIMT--XXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEEAV 846
            ++D N TN  + AA       +  Q+  S SAT +I   +A Q + LRLVVSGFQKFMNAKEVTKI+    I+YESLKR +STTVA+LRF SV QR+KAA DLV + VKGR +RTMVP  E+RRIF++Q  ++ G+KR       R+  G                                 E VKTLA+VVTP LSLPY EQL+QKE+DIA++CV K FREIKKSY  KNKQLKRA+Q GEGGS    RHVRAP+WAWG RYAKE FV EPI PSP +EGYRNK EFTVGR+ EG+PTVGFR+G FR+G M VGGLE GCVLLD +T RV  ALQAF+RR GALPVYDQ  HEGVWRYVTVR S RT QCLV VCAAI+KQG + W REQ  +V+YLTA T   +EG                                 EG+   V +      P ++ L + S+  T                                  WTG+TSLFL PYEGLSNP+A++PL+HLWG  Y+EE+LLGL+FRISP AFFQVNTAGAEVLYQKV+DES  R  ++ +   E P+LILDVCCGTGTIGICAA QLE +      + E   G   ++ NI            A K  +     SLVLGIE+CESAVEDA  NA +N V  AAF+CS+AED+LLS+LR++P S +S                     S     E +LAGLS EVRA L+ ++                  DPPR+GLH DCLRALRNC  +QRLVYVSCNP+KSLPRDAVALCGPPSQ+LKG +FRPVKAIPVDMFPHT HCEV+MVFERG+ E V
Sbjct:    3 STDGNDTNGDTPAAATDNGTALCDQTAPSTSATEAIAL-SARQPDQLRLVVSGFQKFMNAKEVTKILAQGKIDYESLKRAVSTTVAVLRFASVEQREKAATDLVKICVKGRPLRTMVPKPEERRIFHQQDHEQCGSKRKGKLNAPREPDGKRGREGSVEGGGDTLME----------------ESVKTLADVVTPFLSLPYMEQLQQKERDIAVECVQKTFREIKKSYADKNKQLKRAYQHGEGGSDSQPRHVRAPNWAWGGRYAKETFVVEPIVPSPCLEGYRNKCEFTVGRDQEGRPTVGFRMGAFRNGVMQVGGLEEGCVLLDALTQRVVAALQAFIRRRGALPVYDQITHEGVWRYVTVRTSSRTKQCLVCVCAAIEKQGAD-WAREQAALVDYLTATTPVGMEGEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGESREVNSFSTTSGPSVSMLHAPSEKETSSNK--------------------GDSVVAPHGAWTGVTSLFLAPYEGLSNPSADEPLIHLWGSPYLEEELLGLRFRISPQAFFQVNTAGAEVLYQKVIDESLGRGGKKGDGAAEAPRLILDVCCGTGTIGICAAKQLEGRVQAGREIAEDPPGTSTQQDNI-----------AALKGQQADVATSLVLGIEICESAVEDAVENARQNRVGCAAFLCSRAEDILLSVLREKPVSSVSVSPPLPASTGNNATTPVSGGRSGHHVAEEKLAGLSAEVRAALQAVLVDQNSASAGSKTLVAAIVDPPRSGLHADCLRALRNCRHIQRLVYVSCNPSKSLPRDAVALCGPPSQRLKGEAFRPVKAIPVDMFPHTSHCEVVMVFERGDVEIV 811          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: GAY03400.1 (Hypothetical protein PINS_011229 [Pythium insidiosum])

HSP 1 Score: 302.0 bits (772), Expect = 6.100e-78
Identity = 197/525 (37.52%), Postives = 260/525 (49.52%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            + I  SP  EGYRNK EF++G + +G+P VGFRLG FRDG++ V      CV +  V  +V  A+Q  V   G +PVYD +  EGVWR +TVR S+RTGQ ++     I +   ++   E+ E V  LT                     K  +VG           D  T+   P                                +TSL++  Y G+S  + +DPLVHL G K +EE LLGL+F +SP AFFQVNT GAE LY  V   +  +E+          L+ DVCCGTGTIGICAA               GVG+                              V+GIE+C++A +DA VNA RN V N +F+ SKAEDV+  +L+ +      +T                A L+ ++                DPPR GLH   LR+LR+CP V R+VYVSCNPT SL +DAV LCGP ++ + G +FRPV AIPVDMFPHT HCE+I+VF+R
Sbjct: 1988 DSIHASPVTEGYRNKCEFSIGFDADGKPCVGFRLGLFRDGSVIVNA-PTNCVNVSTVMEQVCAAVQQLVETSG-IPVYDVKTQEGVWRLLTVRHSERTGQLMI-----ILQINPKSLSAEELEKVRALT---------------------KAHLVG-----------DDTTLANVPFQ------------------------------VTSLYIQEYAGVSAASEDDPLVHLHGSKTIEEILLGLRFSVSPSAFFQVNTQGAETLYSLVKRHANADEQ---------TLLYDVCCGTGTIGICAAA--------------GVGK------------------------------VVGIEICKAATDDAAVNAERNSVSNVSFVNSKAEDVMRDLLKTKQEGGEDATD---------------ANLKRVVA-------------IVDPPRAGLHHQVLRSLRSCPPVDRIVYVSCNPTGSLIQDAVTLCGPKTKSITGQAFRPVHAIPVDMFPHTPHCEMIIVFDR 2362          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_008609440.1 (hypothetical protein SDRG_05502 [Saprolegnia diclina VS20] >EQC37278.1 hypothetical protein SDRG_05502 [Saprolegnia diclina VS20])

HSP 1 Score: 284.3 bits (726), Expect = 1.300e-72
Identity = 184/525 (35.05%), Postives = 246/525 (46.86%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            EPI+ SP +EGYRNK EFT G +VE +P VGFR+G F++G + V G+   C+ +  V   + +  QA +    ++PVYD   HEGVWR +T+R SQRT Q ++ + A       EAW  E+  +VE LTA                                                                              I+S+F+  Y G+S P  + P+ H++G   +EE+LLGLKFRIS  AFFQVNT GAEVLY  V   +  ++            + DVCCGTGTIGIC A                                          +  RK  V+G+E+C++A +DA VNA  N ++N +FI SKAEDV+  +L+ +P                    E    L+E +                DPPR GLH   LR+LR+   V+R+VYVSCNPT SL  DA  LCGP +  L+G  F+PV A PVDMFPHT HCE+I+VFER
Sbjct:  430 EPIAASPILEGYRNKCEFTFGYDVEHKPVVGFRVGMFKEGVVAV-GVADECINVPQVMKDICRTFQAHL-ETSSMPVYDVMTHEGVWRLLTIRLSQRTNQIMLMIQANPSSVDAEAWTTEKTALVETLTA--------------------------------------------------------------------------AHPAISSMFVQEYTGVSAPTEDHPIEHVFGATTIEEELLGLKFRISAQAFFQVNTPGAEVLYSLVKRFAAASD---------ATQVYDVCCGTGTIGICVA------------------------------------------QDARK--VIGVELCKAATDDAAVNAELNNIRNISFINSKAEDVMKELLKKKPEG------------------EGAEFLKEAVA-------------IVDPPRAGLHTKVLRSLRDTRPVKRIVYVSCNPTVSLINDATTLCGPCTSNLRGTPFKPVFAAPVDMFPHTEHCEMIIVFER 794          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_012199899.1 (hypothetical protein SPRG_05934 [Saprolegnia parasitica CBS 223.65] >KDO29397.1 hypothetical protein SPRG_05934 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 280.4 bits (716), Expect = 1.900e-71
Identity = 184/533 (34.52%), Postives = 249/533 (46.72%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSL--------PRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            EPI+PSP +EGYRNK EFT G +VE +P VGFR+G F++G + VG  +  C+ +  V   + +  QA +    ++PVYD   HEGVWR +T+R SQRT Q ++ + A       EAW+ E++ +VE L+A                                                                              I+S+F+  Y G+S P  + P+ H++G   +EE+LLGLKFRIS  AFFQVNT GAEVLY  V   +  ++            + DVCCGTGTIGIC A                                          +  RK  V+G+E+C++A +DA VNA  N ++N +FI SKAEDV+  +L+ +P                    E    L+E +                DPPR GLH   LR+LR+   V+R+VYVSCNPT SL          DA  LCGP +  L+G  F+PV A PVDMFPHT HCE+I+VFER
Sbjct:  430 EPIAPSPILEGYRNKCEFTFGYDVEHKPVVGFRVGMFKEGVVAVGAAD-DCINVPQVMKDICRTFQAHL-EASSMPVYDVMTHEGVWRLLTIRLSQRTNQIMLMIQANPSSVEAEAWVAEKKTLVETLSA--------------------------------------------------------------------------AHPTISSMFVQEYTGVSAPTEDHPIEHVFGATTIEEELLGLKFRISAQAFFQVNTPGAEVLYSLVKRFAAASD---------ATQVYDVCCGTGTIGICVA------------------------------------------QDARK--VIGVELCKAATDDAAVNAELNNIRNISFINSKAEDVMKELLKKKPEG------------------EGAEFLKEAVA-------------IVDPPRAGLHTKVLRSLRDTRPVKRIVYVSCNPTVSLINVRADSDMMDATTLCGPCTSNLRGTPFKPVFAAPVDMFPHTEHCEMIIVFER 802          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: OQR94780.1 (tRNA (uracil-5-)-methyltransferase [Achlya hypogyna])

HSP 1 Score: 280.0 bits (715), Expect = 2.500e-71
Identity = 182/525 (34.67%), Postives = 245/525 (46.67%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            E I+PSP +EGYRNK EFT G +V+ +P VGFR+G +++G + VG  E  C+ +  V   + K  Q ++     LPVYD   HEGVWR +T+R SQRT Q ++ V A         W  E+  +V  LTA                                                                             GI+S+F+  Y G+S P  + P+ H++G   +EE+LLGLKFRIS  AFFQVNT GAEVLY  V        + +   +++ + + DVCCGTGTIGIC A++  +                                            V+G+E+C++A +DA VNA  N V+N  FI SKAEDV+  +LR +P       + A+  + A                              DPPR GLH   LR+LR+   V+R+VYVSCNPT SL  DA  LCGP +  L+G  F+PV A PVDMFPHT HCE+I+VFER
Sbjct:  427 ERIAPSPVLEGYRNKCEFTFGYDVDKKPVVGFRVGMYKEGVVAVGSPE-DCINVPQVMKDICKTFQTYL-ATSTLPVYDVLTHEGVWRLLTIRLSQRTNQIMLMVQANPTDVDAAVWATEKTALVSTLTA--------------------------------------------------------------------------AHPGISSMFVQEYTGVSAPAEDHPIDHVYGATTIEEELLGLKFRISAQAFFQVNTPGAEVLYSLV--------KRFAAADDKTQ-VYDVCCGTGTIGICVASEARK--------------------------------------------VIGVELCKAATDDAAVNADLNAVKNITFINSKAEDVMKELLRKKPEG-----EGAEFVQQA--------------------------VAIVDPPRAGLHTKVLRSLRDTRPVKRIVYVSCNPTVSLINDAATLCGPSTSNLRGDPFKPVFAAPVDMFPHTEHCEMIIVFER 791          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: OQS03270.1 (tRNA (uracil-5-)-methyltransferase [Thraustotheca clavata])

HSP 1 Score: 280.0 bits (715), Expect = 2.500e-71
Identity = 178/525 (33.90%), Postives = 243/525 (46.29%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            EPI+PSP +EGYRNK EFT G ++  +P VGFR+G +++G + VG  +  C+ +  V   + +  QA++     LPVYD   HEGVWR +T+R S+RT Q ++ + A       + W  E+ +++  LT +T P                                                                          ITS+++  Y G+S P+ + P+ H++G   +EE+LLGLKFRIS  AFFQVNT GAEVLY  V   +   +            + DVCCGTGTIGIC A+                                                V+G+E+C++A +DA VNA  N + N  FI SKAEDV+  +LR +P                    E    +RE +                DPPR GLH   LR+LR+   V+R+VYVSCNPT SL  DA  LCGP +  L+G  F+PV A PVDMFPHT HCE+I+VFER
Sbjct:  423 EPIAPSPILEGYRNKCEFTFGYDINKKPVVGFRIGMYKEGVVAVGSAD-KCINVPQVMKDICRTFQAYL-ESSPLPVYDVMTHEGVWRLLTIRLSERTKQIMLMIQANPSNIEADVWTAEKAKLISTLT-QTHP-------------------------------------------------------------------------AITSMYMQEYIGVSAPSEDHPIEHVFGATTIEEELLGLKFRISAQAFFQVNTPGAEVLYSLVKRFAAAGDS---------TQVYDVCCGTGTIGICVASDARN--------------------------------------------VIGVELCKAATDDAAVNAELNNISNITFINSKAEDVMKDLLRKKPEG------------------EGAEFVREAVA-------------IVDPPRAGLHTKVLRSLRDTRPVKRIVYVSCNPTVSLINDATTLCGPCTSNLRGEPFKPVFAAPVDMFPHTEHCEMIIVFER 787          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_009826902.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Aphanomyces astaci] >ETV83472.1 23S rRNA (uracil-5-)-methyltransferase RumA [Aphanomyces astaci])

HSP 1 Score: 279.3 bits (713), Expect = 4.300e-71
Identity = 181/526 (34.41%), Postives = 245/526 (46.58%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLR-DRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            +PI+PSPA+EGYRNK EF+ G + +  P VGFR GT++DG + VG  +  C+ +      +    QAF+ +  ++PVYD   H+GVWR +T+R S  T + +V V A       +AW   + E+VE LT++                                                                             ITS F+  Y G+S P  + P+VH++G  ++EE+LLGL+FRIS +AFFQVNT GAE LY  V         E+   + + + + DVCCGTGTIG+C A    +                                            V+GIE+C++A +DA VNAS N + NA FI +KAEDV+ ++LR  R  + L   +A                                     DPPR GLHV  LRALR    V R+VYVSCNPT SL  +A  LCGP +  LKG +F+PV A PVDMFPHT HCE+I+VFER
Sbjct:  431 QPIAPSPALEGYRNKCEFSCGYDADRNPVVGFRFGTYKDGLVSVGAPD-ECINVPATMKAMVATFQAFLNQ-SSMPVYDVLTHQGVWRLLTIRASVHTSEVMVCVQANPSALDADAWTAAKAELVEALTSK---------------------------------------------------------------------------HAITSFFVQEYSGVSAPEEDHPVVHVYGKSHIEEELLGLRFRISANAFFQVNTPGAEALYSLV--------REFTAADAKTQ-VYDVCCGTGTIGLCLAADAGK--------------------------------------------VVGIELCKAATDDAAVNASLNNISNATFINAKAEDVMKNVLRTPRQGNDLLLEQAV---------------------------------AVVDPPRAGLHVKVLRALREFNPVTRIVYVSCNPTGSLVENAATLCGPETSNLKGRAFKPVAAAPVDMFPHTEHCEMIIVFER 793          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_002903823.1 (tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4] >EEY54878.1 tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4])

HSP 1 Score: 276.2 bits (705), Expect = 3.600e-70
Identity = 189/528 (35.80%), Postives = 249/528 (47.16%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            + I  SP  EGYRNK EF+ G + E +P VGFRLG FR+G++ V   +  C+ +      V   +Q  V     +PVY      GVWR +TVR+S  TG+ +V V   +   G+     E+R  V+ L  +                                      +T + N                                 ITS+F+  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              EGVG+                              V+GIE+C+ A +DA+VNA  N VQN +F+ SKAEDV+ S+L   RD    HL+   A                                     DPPR GLH + LRALR CP V+R+VYVSCNPT SL RDAV LCGP ++ L+G +F PV A+PVDMFPHT HCE+I+VF+R
Sbjct:  447 DSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPD-ECINVSKEMKAVCAVMQNIV-ETSDVPVYSVTTKSGVWRVLTVRQSVSTGELMVMV--QVNLVGKTP---EERAAVKDLVVK-------------------------------------RLTDESNAFK------------------------------ITSVFIQEYEGLSAPSDNDPVEHVYGKTKLEEHLLGMRFSVSPNAFFQVNTHGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------EGVGK------------------------------VVGIEICKPATDDAQVNAILNNVQNVSFVNSKAEDVMKSLLQKKRDESEKHLNRVVA-----------------------------------IVDPPRAGLHHNVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFPHTPHCEMIIVFDR 812          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: XP_008869041.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Aphanomyces invadans] >ETW02436.1 23S rRNA (uracil-5-)-methyltransferase RumA [Aphanomyces invadans])

HSP 1 Score: 273.9 bits (699), Expect = 1.800e-69
Identity = 177/525 (33.71%), Postives = 242/525 (46.10%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            +PI+PSPA+EGYRNK EF+ G + + +P VGFR GT++DG + VGG +  CV +      + K  Q F+ +   LPVYD   HEGVWR +T+R S  T + +V V A      E  W   +  +V  +T++                                                                             I S F+  Y G+S P  + P+VH++G   +EE+LLGL+FRIS +AFFQVNT GAE LY  V         E+   +++ + + DVCCGTGTIG+C A    +                                            ++GIE+C++A +DA  NA+ NG+ NA F+ +KAEDV+  +LR          +  ++ RL      V                        DPPR GLH+  LRALR    V R+VYVSCNPT SL  +A  LCGP +  LKG +F+PV A PVDMFPHT HCE+I+VFER
Sbjct:  431 KPITPSPALEGYRNKCEFSCGYDADRKPIVGFRFGTYKDGLVSVGGPD-DCVNVPASMKAMVKTFQEFLNQ-SELPVYDVTTHEGVWRLLTIRASVHTKEVMVCVQANPSSLDETTWEAAKSNVVAAMTSK---------------------------------------------------------------------------HAIASFFVQEYTGVSAPEEDHPVVHVYGKTQIEEELLGLRFRISANAFFQVNTPGAEALYSLV--------REYAAADDKTQ-VYDVCCGTGTIGLCLAADAGK--------------------------------------------IVGIELCKAATDDAAANATINGISNATFVNAKAEDVMKEVLR--------KPREGNDLRLERAVAVV------------------------DPPRAGLHIKVLRALRAFRPVTRIVYVSCNPTGSLVENAATLCGPETSNLKGAAFKPVAAAPVDMFPHTEHCEMIIVFER 793          
BLAST of NO06G03750 vs. NCBI_GenBank
Match: ETI42918.1 (23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica P1569] >ETL89551.1 23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica] >ETM42834.1 23S rRNA (uracil-5-)-methyltransferase RumA [Phytophthora parasitica])

HSP 1 Score: 273.5 bits (698), Expect = 2.300e-69
Identity = 186/528 (35.23%), Postives = 248/528 (46.97%), Query Frame = 0
Query:  315 EPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGTFRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGVWRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLLEGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWTGITSLFLGPYEGLSNPNANDPLVHLWGLKYMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEERPKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGEDDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSKAEDVLLSML---RDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTXXXXXXXXXXXXXXXDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVALCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFER 840
            + I  SP  EGYRNK EF+ G + E +P VGFRLG FR+G++ V   +  C+ +      V   +Q  +     +PVY+     GVWR +TVR+S  TG+ +V V    K + +     E+R  V+ L  +                               L   S+S                                       ITS+F+  YEGLS P+ NDP+ H++G   +EE LLG++F +SP+AFFQVNT GAE LY  V   +  +E           L+ DVCCGTGTIGICA+              +GVG+                              V+GIE+C+ A +DA+VNA  N VQN +F+ SKAEDV+  +L   RD    HL+   A                                     DPPR GLH   LRALR CP V+R+VYVSCNPT SL RDAV LCGP ++ ++G +F PV A+PVDMFPHT HCE+I+VF+R
Sbjct:  454 DSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPD-ECINVSKEMKAVCAVMQN-ILETSDVPVYNVTTKSGVWRVLTVRQSVNTGELMVMVQVNPKDKTD-----EERAAVKDLVVK------------------------------RLTDESNSFK-------------------------------------ITSIFMQEYEGLSAPSDNDPVEHVYGNTKLEEYLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEH---------TLLYDVCCGTGTIGICAS--------------KGVGK------------------------------VVGIEICKPATDDAKVNAVLNDVQNVSFVNSKAEDVMKDLLHKKRDESEQHLNRVVA-----------------------------------IVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDR 819          
The following BLAST results are available for this feature:
BLAST of NO06G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26366.15.100e-21852.80trna (uracil-5-)-methyltransferase [Nannochloropsi... [more]
GAY03400.16.100e-7837.52Hypothetical protein PINS_011229 [Pythium insidios... [more]
XP_008609440.11.300e-7235.05hypothetical protein SDRG_05502 [Saprolegnia dicli... [more]
XP_012199899.11.900e-7134.52hypothetical protein SPRG_05934 [Saprolegnia paras... [more]
OQR94780.12.500e-7134.67tRNA (uracil-5-)-methyltransferase [Achlya hypogyn... [more]
OQS03270.12.500e-7133.90tRNA (uracil-5-)-methyltransferase [Thraustotheca ... [more]
XP_009826902.14.300e-7134.4123S rRNA (uracil-5-)-methyltransferase RumA [Aphan... [more]
XP_002903823.13.600e-7035.80tRNA (uracil-5-)-methyltransferase [Phytophthora i... [more]
XP_008869041.11.800e-6933.7123S rRNA (uracil-5-)-methyltransferase RumA [Aphan... [more]
ETI42918.12.300e-6935.2323S rRNA (uracil-5-)-methyltransferase RumA [Phyto... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000101NSK000101Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03750.1NO06G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558298gene_6704Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100031g21gene4156Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03750.1NO06G03750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03750 ID=NO06G03750|Name=NO06G03750|organism=Nannochloropsis oceanica|type=gene|length=2710bp
CCTCATCTACGCCCTACATGTACCCATGGACTTAATGGATGCGGACGACG
TCAAATTTGCCACAGCCGACACATCTGCGGCTTCCGTGGAGCGTGCGGCA
GTCTCTCCAGCCACCACCGCCCCTCCCACCTCCCGTCCCACCACTGCTCA
AAATACTCCATGCGCCTGTGCCAGCGACGCTAATACTACTAATGTGGCTT
CTGCTGCGGCCCTTGGTGTTGCTCCTCAAAGCCAAGCCTCAGTCTCCGCT
ACCACAAGCATCCCCACTCCTGCCGCAGGTCAAGAAGAGGTACTCCGTCT
CGTGGTCTCTGGCTTCCAAAAGTTCATGAATGCCAAGGAGGTCACCAAGA
TCATGAAGCACGCCAACATTGAGTATGAGTCCTTGAAACGGCCCATGTCC
ACGACCGTTGCTATCCTCCGCTTTAACAGCGTGGCGCAACGTGACAAGGC
CGCAGCAGATTTGGTGGGTGTAAACGTTAAGGGACGGGCAGTGCGAACGA
TGGTGCCTGTAGACGAGGATCGGCGCATATTCAACAAGCAGGGTCAAGAC
CGGCGGGGGGCAAAGCGTGGGGTAGGGCACGAGGGAGGAAGAGACGACCG
AGGCGAAAAGCGTGCCCGGGGTGGGGGTGCGGAAGACGGAGATGGAGGAA
GAGGAGGAGGAGGAGGAGGAGGTAGTGGTGGAGATGAAGACGAGGGGCAC
GTGGAGATCGTCAAAACGCTTGCCGAAGTAGTGACCCCGCTTTTGAGCTT
GCCGTACGCTGAGCAGCTCCGGCAGAAGGAGAAGGACATTGCCTTGGACT
GTGTGGGGAAGATGTTTCGGGAAATCAAGAAGTCCTACGAACAAAAAAAC
AAGCAACTAAAACGCGCTCACCAACTAGGGGAAGGCGGCTCCTCCGACGC
TGCCCGGCATGTCCGTGCTCCTGATTGGGCATGGGGAAATAGATACGCAA
AGGAAGTATTTGTGACGGAGCCTATTTCTCCTTCTCCTGCTGTGGAGGGG
TACAGAAATAAGAACGAATTTACTGTGGGCCGAAACGTGGAGGGACAACC
GACGGTTGGCTTCCGCTTGGGCACATTCAGGGACGGAAATATGCACGTCG
GAGGGTTGGAGGGAGGGTGTGTGTTGCTCGACCCGGTGACACTGAGAGTG
GCCAAGGCGCTGCAAGCCTTTGTCAGGCGTCCGGGGGCGCTGCCTGTGTA
CGATCAGCAGAAGCATGAGGGGGTATGGAGGTACGTTACGGTGAGGAGGA
GTCAGAGAACGGGGCAGTGCTTGGTATGGGTGTGTGCGGCAATCAAGAAG
CAGGGAGAGGAGGCGTGGATGAGGGAGCAGAGGGAAATGGTCGAATACCT
GACGGCACGGACTCGGCCTCTGTTGGAGGGGGGGAAGGAGCGAAGGAATG
CAGGAGGGGAAGAAGGAAAAGAAGAAGTGGTTGGAGCTCCTCTACTTGCC
ACTCTTCCATCTACCAGCGATAGCGTAACGATAGATAAGAATCCTGCTTC
TGCTGCTGCTAGTGCTCTTCTTCCTTCCCCTGCCACCTCTACCACCTTCT
CCTCTTCCTCCTCCTCGTCCTCCCCCTCCTGCTGGACAGGCATCACCTCA
CTCTTTCTCGGACCTTACGAGGGCTTGAGCAACCCCAATGCTAACGACCC
TCTGGTTCACCTGTGGGGGTTGAAATATATGGAGGAAGACTTGCTGGGTT
TGAAATTTCGAATTTCCCCGCACGCGTTTTTCCAAGTCAATACCGCTGGG
GCCGAGGTGCTGTATCAGAAAGTGGTTGACGAAAGTCGAAGGAATGAAGA
AGAATGGGAGAAAGAAGAGGAGCGGCCGAAGTTGATTTTAGACGTGTGTT
GCGGCACAGGGACCATTGGCATTTGTGCGGCAACGCAGCTGGAGGAGAAA
AAGATGGAGGAGGAGGTGGTAGTGGAGGGAGTGGGGGAGGAGGAGAAAAA
TATAATCGCCAGAATAAGCGGTGAAGACGATCCCTCGGGTGCCACAAAAC
AACTCGAGGAACAGGAGAGAAAAAGCCTAGTCTTAGGCATCGAAATGTGC
GAATCAGCGGTTGAAGACGCGCGGGTGAATGCATCACGGAATGGGGTTCA
GAACGCCGCCTTTATCTGCTCCAAGGCGGAAGATGTCCTCCTTAGTATGC
TTCGGGACCGGCCTTCCTCCCATCTCTCCAGCACTAAAGCTGCAGATGAA
GCACGCCTTGCGGGGCTCTCTCCCGAGGTTCGCGCCACTTTGCGTGAGAT
CATGACTGCGAGCAGCAGCAGTAGTAGTAGTAGTAGTGTGATTGCCATTG
TGGATCCTCCTCGAAATGGGCTCCACGTGGATTGTCTCCGGGCGTTGAGA
AACTGTCCACGGGTCCAACGGCTTGTGTACGTGTCGTGTAATCCCACCAA
GAGCCTGCCTCGTGACGCCGTGGCGTTGTGCGGTCCACCCTCTCAGAAAT
TGAAGGGGGTGTCATTTCGGCCCGTCAAAGCAATACCTGTTGACATGTTC
CCCCACACAAGGCACTGTGAAGTGATTATGGTGTTTGAGAGGGGAGAGGA
AGAGGCAGTGGAGGAAGAGGGGGATAAAGGCGTCAAGAAGGAGGGCGGGG
AAGGCGGGGCGGATGAAGAGGGCGTGTTGGAGGGGATTGTGACGAAGACG
CTGGTGGAGGAGGGAGAATAGAACATTTAATAAACTAATTAAGACAAATT
CAGTACAGGA
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protein sequence of NO06G03750.1

>NO06G03750.1-protein ID=NO06G03750.1-protein|Name=NO06G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=882bp
MDLMDADDVKFATADTSAASVERAAVSPATTAPPTSRPTTAQNTPCACAS
DANTTNVASAAALGVAPQSQASVSATTSIPTPAAGQEEVLRLVVSGFQKF
MNAKEVTKIMKHANIEYESLKRPMSTTVAILRFNSVAQRDKAAADLVGVN
VKGRAVRTMVPVDEDRRIFNKQGQDRRGAKRGVGHEGGRDDRGEKRARGG
GAEDGDGGRGGGGGGGSGGDEDEGHVEIVKTLAEVVTPLLSLPYAEQLRQ
KEKDIALDCVGKMFREIKKSYEQKNKQLKRAHQLGEGGSSDAARHVRAPD
WAWGNRYAKEVFVTEPISPSPAVEGYRNKNEFTVGRNVEGQPTVGFRLGT
FRDGNMHVGGLEGGCVLLDPVTLRVAKALQAFVRRPGALPVYDQQKHEGV
WRYVTVRRSQRTGQCLVWVCAAIKKQGEEAWMREQREMVEYLTARTRPLL
EGGKERRNAGGEEGKEEVVGAPLLATLPSTSDSVTIDKNPASAAASALLP
SPATSTTFSSSSSSSSPSCWTGITSLFLGPYEGLSNPNANDPLVHLWGLK
YMEEDLLGLKFRISPHAFFQVNTAGAEVLYQKVVDESRRNEEEWEKEEER
PKLILDVCCGTGTIGICAATQLEEKKMEEEVVVEGVGEEEKNIIARISGE
DDPSGATKQLEEQERKSLVLGIEMCESAVEDARVNASRNGVQNAAFICSK
AEDVLLSMLRDRPSSHLSSTKAADEARLAGLSPEVRATLREIMTASSSSS
SSSSVIAIVDPPRNGLHVDCLRALRNCPRVQRLVYVSCNPTKSLPRDAVA
LCGPPSQKLKGVSFRPVKAIPVDMFPHTRHCEVIMVFERGEEEAVEEEGD
KGVKKEGGEGGADEEGVLEGIVTKTLVEEGE*
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Synonyms
Publications