NO06G02880, NO06G02880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G02880 vs. NCBI_GenBank
Match: OAY69326.1 (Transcription factor MYB98 [Ananas comosus]) HSP 1 Score: 122.9 bits (307), Expect = 4.800e-24 Identity = 51/98 (52.04%), Postives = 75/98 (76.53%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARG 103 Q+G+ +WS++A+ + GRIGKQCRERW+NHL P +KK WTEEE+ +L+ A +K+GN W +IAK VPGRSEN++KN WN+ RR++ +++ +RG Sbjct: 141 QHGVRRWSQIAKNLVGRIGKQCRERWHNHLRPDIKKETWTEEEERMLVEAHKKFGNKWAEIAKHVPGRSENSIKNHWNATKRRQNAKRRSKRKTGSRG 238
BLAST of NO06G02880 vs. NCBI_GenBank
Match: XP_004990589.1 (transcription factor [Salpingoeca rosetta] >EGD77245.1 transcription factor [Salpingoeca rosetta]) HSP 1 Score: 122.5 bits (306), Expect = 6.300e-24 Identity = 53/101 (52.48%), Postives = 76/101 (75.25%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARGLPV 106 ++G WSE+A+K+ R+GKQCRERW+NHL+P++KKG W+++E+ +LL A +K GN W +IAK +PGR++NAVKN WNS RRR + + AA GLP+ Sbjct: 120 EHGAKNWSEIAKKMKTRVGKQCRERWHNHLDPSVKKGAWSDDEERILLDAHKKLGNKWAEIAKLLPGRTDNAVKNHWNSNMRRRKLQKQREQEAARTGLPM 220
BLAST of NO06G02880 vs. NCBI_GenBank
Match: XP_007146726.1 (hypothetical protein PHAVU_006G064600g [Phaseolus vulgaris] >ESW18720.1 hypothetical protein PHAVU_006G064600g [Phaseolus vulgaris]) HSP 1 Score: 122.5 bits (306), Expect = 6.300e-24 Identity = 60/143 (41.96%), Postives = 89/143 (62.24%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARGLPVEGDLKMGVGKIAATTISSSSRSSSVKPSIRSTLEAASDGSSL 148 Q+G KWS++AEK+ GR GKQCRERW+NHL P +KK W+EEE+ +L+ K GN W +IAK++ GR+ENA+KN WN+ RR++ K + A G P+ L+ + +A T S+ S ++ P + + +D SL Sbjct: 152 QHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEERILVQYHAKLGNRWAEIAKQMKGRTENAIKNHWNATKRRQNSRRKNKRPGIANGKPLSSILQDYIKSLALTNTSTPSVEQTLAPQHLADIVVTNDNFSL 294
BLAST of NO06G02880 vs. NCBI_GenBank
Match: OIV95558.1 (hypothetical protein TanjilG_02913 [Lupinus angustifolius]) HSP 1 Score: 122.5 bits (306), Expect = 6.300e-24 Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARGLP 105 Q+G+ KWS++AEK+ GR GKQCRERW+NHL P +KK W+EEE+ +L+ K GN W +IAK +PGR+ENA+KN WN+ RR++ K + A + G P Sbjct: 165 QHGVTKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHAKVGNRWAEIAKIIPGRTENAIKNHWNATKRRQNSRRKNKRPATSNGKP 264
BLAST of NO06G02880 vs. NCBI_GenBank
Match: CRL04063.1 (CLUMA_CG017176, isoform A [Clunio marinus]) HSP 1 Score: 122.5 bits (306), Expect = 6.300e-24 Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 0 Query: 7 GIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRR-----DKISKTQ 96 G KW+ +A + GRIGKQCRERW+NHLNPA+KK WTEEED ++ A ++WGN W KIAK +PGR++NA+KN WNS RR+ D+++K + Sbjct: 109 GPKKWTLIARHLKGRIGKQCRERWHNHLNPAIKKTAWTEEEDNIIYQAHKQWGNQWAKIAKLLPGRTDNAIKNHWNSTMRRKYEGVADRVAKNK 202
BLAST of NO06G02880 vs. NCBI_GenBank
Match: XP_019418525.1 (PREDICTED: transcription factor MYB108-like [Lupinus angustifolius]) HSP 1 Score: 122.5 bits (306), Expect = 6.300e-24 Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARGLP 105 Q+G+ KWS++AEK+ GR GKQCRERW+NHL P +KK W+EEE+ +L+ K GN W +IAK +PGR+ENA+KN WN+ RR++ K + A + G P Sbjct: 162 QHGVTKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHAKVGNRWAEIAKIIPGRTENAIKNHWNATKRRQNSRRKNKRPATSNGKP 261
BLAST of NO06G02880 vs. NCBI_GenBank
Match: KJB53163.1 (hypothetical protein B456_008G295800 [Gossypium raimondii]) HSP 1 Score: 122.1 bits (305), Expect = 8.200e-24 Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARGLPVEGDLKMGVGKIAATTISSSSRSSSVKPSIRSTLEAASDGSSLYLVDNK 154 Q G+ KWS +A+ +PGRIGKQCRERW+NHL P +KK W+EEED +L+ A R+ GN W +IAK +PGR+EN++KN WN+ RR + SK + + K G I I S + S+ + RS E ASDG+++ DNK Sbjct: 212 QYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDTWSEEEDKVLIQAHREIGNKWAEIAKRLPGRTENSIKNHWNATKRR--QFSKRKCRS-----------KYPRGSILQEYIKSLNLDSTAAAAARSH-EKASDGAAVKAADNK 346
BLAST of NO06G02880 vs. NCBI_GenBank
Match: XP_012440417.1 (PREDICTED: transcription factor MYB98-like [Gossypium raimondii]) HSP 1 Score: 122.1 bits (305), Expect = 8.200e-24 Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARGLPVEGDLKMGVGKIAATTISSSSRSSSVKPSIRSTLEAASDGSSLYLVDNK 154 Q G+ KWS +A+ +PGRIGKQCRERW+NHL P +KK W+EEED +L+ A R+ GN W +IAK +PGR+EN++KN WN+ RR + SK + + K G I I S + S+ + RS E ASDG+++ DNK Sbjct: 228 QYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDTWSEEEDKVLIQAHREIGNKWAEIAKRLPGRTENSIKNHWNATKRR--QFSKRKCRS-----------KYPRGSILQEYIKSLNLDSTAAAAARSH-EKASDGAAVKAADNK 362
BLAST of NO06G02880 vs. NCBI_GenBank
Match: XP_016728651.1 (PREDICTED: transcription factor MYB98-like [Gossypium hirsutum]) HSP 1 Score: 122.1 bits (305), Expect = 8.200e-24 Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRRDKISKTQVAAAARGLPVEGDLKMGVGKIAATTISSSSRSSSVKPSIRSTLEAASDGSSLYLVDNK 154 Q G+ KWS +A+ +PGRIGKQCRERW+NHL P +KK W+EEED +L+ A R+ GN W +IAK +PGR+EN++KN WN+ RR + SK + + K G I I S + S+ + RS E ASDG+++ DNK Sbjct: 229 QYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDTWSEEEDKVLIQAHREIGNKWAEIAKRLPGRTENSIKNHWNATKRR--QFSKRKCRS-----------KYPRGSILQEYIKSLNLDSTAAAAARSH-EKASDGAAVKAADNK 363
BLAST of NO06G02880 vs. NCBI_GenBank
Match: PIA32131.1 (hypothetical protein AQUCO_04500020v1 [Aquilegia coerulea]) HSP 1 Score: 122.1 bits (305), Expect = 8.200e-24 Identity = 49/84 (58.33%), Postives = 67/84 (79.76%), Query Frame = 0 Query: 5 QNGIMKWSEVAEKVPGRIGKQCRERWYNHLNPALKKGGWTEEEDGLLLAAQRKWGNAWTKIAKEVPGRSENAVKNRWNSAARRR 89 +NG+ KWS++A K+ GR GKQCRERW+NHL P +KK W+EEE+ +L+ A K+GN W +IAK++PGRSENA+KN WN+ RR+ Sbjct: 146 ENGVKKWSQIAHKMVGRAGKQCRERWHNHLRPDIKKDSWSEEEEIMLIEAHEKFGNRWAEIAKQIPGRSENAIKNHWNATKRRQ 229 The following BLAST results are available for this feature:
BLAST of NO06G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02880 ID=NO06G02880|Name=NO06G02880|organism=Nannochloropsis oceanica|type=gene|length=4912bpback to top protein sequence of NO06G02880.1 >NO06G02880.1-protein ID=NO06G02880.1-protein|Name=NO06G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=835bpback to top Synonyms
Publications
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