NO06G02670, NO06G02670 (gene) Nannochloropsis oceanica

Overview
NameNO06G02670
Unique NameNO06G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1137
Alignment locationchr6:757520..758656 +

Link to JBrowse

Properties
Property NameValue
DescriptionCax-interacting protein 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:757520..758656 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC
Homology
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: EWM26280.1 (cax-interacting protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 1.000e-40
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG 101
            MPA++GRVKMPHNNRMSSSAALGTS+MWKNVIKYDPYAN+EDAAAE        EQQRGLMDVVRIKARETLG ESKRGACRKCGN+GHLTYQCRNHLGG
Sbjct:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEXXXXXXXAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGG 100
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: CCI43189.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 107.1 bits (266), Expect = 7.700e-20
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHL 99
            MP+T+GR++MPHNNRM SS  L  + MWKN I YDPYA +++   +   +ELA++Q +GLM + ++  + T      RGAC+KCG +GHLTYQCRNHL
Sbjct:    1 MPSTTGRMRMPHNNRMHSSLTLKMTGMWKNTIGYDPYAASDEGVQD---SELAQDQAKGLMALAKLSNQNT----QSRGACKKCGMIGHLTYQCRNHL 91
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: XP_008891765.1 (hypothetical protein PPTG_02439 [Phytophthora parasitica INRA-310] >ETI50040.1 hypothetical protein F443_06321 [Phytophthora parasitica P1569] >ETL96517.1 hypothetical protein L917_06011 [Phytophthora parasitica] >ETM49673.1 hypothetical protein L914_06131 [Phytophthora parasitica] >ETN22518.1 hypothetical protein PPTG_02439 [Phytophthora parasitica INRA-310] >ETP19808.1 hypothetical protein F441_06329 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 106.7 bits (265), Expect = 1.000e-19
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG 101
            MPAT+GRV+MPHNNRM SSA L  + +WKN I YDPYA   +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: ETK89927.1 (hypothetical protein L915_06195 [Phytophthora parasitica])

HSP 1 Score: 106.7 bits (265), Expect = 1.000e-19
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG 101
            MPAT+GRV+MPHNNRM SSA L  + +WKN I YDPYA   +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: ETL43325.1 (hypothetical protein L916_06133 [Phytophthora parasitica])

HSP 1 Score: 106.7 bits (265), Expect = 1.000e-19
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG 101
            MPAT+GRV+MPHNNRM SSA L  + +WKN I YDPYA   +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: OWZ23764.1 (hypothetical protein PHMEG_0001291 [Phytophthora megakarya])

HSP 1 Score: 105.5 bits (262), Expect = 2.200e-19
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGGN 102
            MPAT+GRV+MPHNNRM SSAAL  + +WK+ I YDPYA   +   +   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAENE---KKETSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGGD 94
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: POM77255.1 (Zinc ion binding protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 104.8 bits (260), Expect = 3.800e-19
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGGN 102
            MPAT+GRV+MPHNNRM SSAAL  + +WK+ I YDPYA   +   +   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGE---KKETSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGGD 94
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: ETO78784.1 (hypothetical protein F444_06384 [Phytophthora parasitica P1976])

HSP 1 Score: 104.4 bits (259), Expect = 5.000e-19
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG 101
            MPAT+GRV+MPHNNRM SSA L  + +W N I YDPYA   +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWTNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: ETP47765.1 (hypothetical protein F442_06364 [Phytophthora parasitica P10297])

HSP 1 Score: 104.4 bits (259), Expect = 5.000e-19
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG 101
            MPAT+GRV+MPHNNRM SSA L  + +W N I YDPYA   +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWTNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94
[Close]
BLAST of NO06G02670 vs. NCBI_GenBank
Match: KUF80801.1 (CAX-interacting protein 4 [Phytophthora nicotianae])

HSP 1 Score: 104.4 bits (259), Expect = 5.000e-19
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:    1 MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAAELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG 101
            MPAT+GRV+MPHNNRM SSA L  + +W N I YDPYA   +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG VGHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWXNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94
The following BLAST results are available for this feature:
BLAST of NO06G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26280.11.000e-4086.00cax-interacting protein 4 [Nannochloropsis gaditan... [more]
CCI43189.17.700e-2052.04unnamed protein product [Albugo candida][more]
XP_008891765.11.000e-1954.00hypothetical protein PPTG_02439 [Phytophthora para... [more]
ETK89927.11.000e-1954.00hypothetical protein L915_06195 [Phytophthora para... [more]
ETL43325.11.000e-1954.00hypothetical protein L916_06133 [Phytophthora para... [more]
OWZ23764.12.200e-1952.48hypothetical protein PHMEG_0001291 [Phytophthora m... [more]
POM77255.13.800e-1952.48Zinc ion binding protein [Phytophthora palmivora v... [more]
ETO78784.15.000e-1953.00hypothetical protein F444_06384 [Phytophthora para... [more]
ETP47765.15.000e-1953.00hypothetical protein F442_06364 [Phytophthora para... [more]
KUF80801.15.000e-1953.00CAX-interacting protein 4 [Phytophthora nicotianae... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000190NSK000190Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02670.1NO06G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|122565gene_6593Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100073g9gene4245Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02670.1NO06G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02670 ID=NO06G02670|Name=NO06G02670|organism=Nannochloropsis oceanica|type=gene|length=1137bp
ATGCCGGCTACTTCTGGGCGCGTGgtaagtacacacagcgaggcaccaca
ctctccaagtcccgccatcgagtatctcatgctctcccccttcttccata
cccaccacagAAAATGCCACACAACAACCGCATGTCCAGCTCAGCGGCCT
TGGGTACAAGCGATATGTGGAAGAATGTTATCAAATACGACCCCTACGCC
AACAACGAAGgtacgtacgtaagctctctgtccctaggacgggtgagctc
cacgtccacaccctaaacccacaaaagaccttctctccgtcctttgcgac
ccctacccaaatccatgcatgacaaaacagACGCTGCTGCCGAAGCTGCT
GCTGCGGAGCTGGCCGAGGAGCAACAAAGGGGGTTGATGGATGTAGTGAG
GATCAAGGCTCGAGAGACGCTCGGTGCAGAAAGCAAACGTGGCGCCTGCC
GAAAATGTGGGAATGTCGGACATTTGACCTATCAGTGCCGGAACCACCTG
GGGGGTAATAATCGAGCAGCGGATTCCGATGATGGCAGCAGTGATGATGA
TGATGAAAGTGTTGAGAGTGATGAGGACGTAGTGCAAGCCAAGGCTGATG
CAGCAGCAACAATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGGA
GACAAGGCGGGGAGAGGAAAGCGTCGGAAGGAAAGGGAGAGGGGATGTAG
TAATGAGGATGGTAGCAGTAGCAGTGGAGCGGATAGCGAAGGGAAGGAAA
GGGGGGCCGACAGACGGAAAAGGAAGCGGGAAAGAGAACGGAGAGTTAGT
CGGAGCCCGGAGCGCTCCAACAAGGAGAGCAAGAAACAAAGAAAGGATAA
AAAGTATAAGAAGgtatgtttttatatgatcttataagatgaaacttgtc
aatttcagtagagcagtaggtcatcgaggggggggggacggtttacaaat
actgagctctcacgcctttcctattccctacttccaaacatagGAAAAGA
AACACAAGAAGGAGAAAAAACGTAAGCGCGAGCGCTAGAATGATATGTGA
ACATGGCCGTGGGCGTGTTTGTGCATGTATCAACAGGACGAAATATTGCA
AAAAAGAAAAAATGGGACTTGCCCATTTATCAGGAAA
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protein sequence of NO06G02670.1

>NO06G02670.1-protein ID=NO06G02670.1-protein|Name=NO06G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPATSGRVKMPHNNRMSSSAALGTSDMWKNVIKYDPYANNEDAAAEAAAA
ELAEEQQRGLMDVVRIKARETLGAESKRGACRKCGNVGHLTYQCRNHLGG
NNRAADSDDGSSDDDDESVESDEDVVQAKADAAATMAAAAAAAAAAVGDK
AGRGKRRKERERGCSNEDGSSSSGADSEGKERGADRRKRKRERERRVSRS
PERSNKESKKQRKDKKYKKEKKHKKEKKRKRER*
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Synonyms
Publications