NO06G02530, NO06G02530 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G02530
Unique Name	NO06G02530
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1605
Alignment location	chr6:712447..714051 -

Link to JBrowse

Properties


Property Name	Value
Description	Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:712447..714051 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004040	amidase activity
GO:0016787	hydrolase activity
GO:0016740	transferase activity
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036928	AS_sf
IPR000120	Amidase
IPR023631	Amidase_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Homology

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: OGW34044.1 (aspartyl/glutamyl-tRNA amidotransferase subunit A [Nitrospirae bacterium GWD2_57_9] >OGW47645.1 aspartyl/glutamyl-tRNA amidotransferase subunit A [Nitrospirae bacterium GWC2_57_9])

HSP 1 Score: 429.1 bits (1102), Expect = 2.000e-116
Identity = 230/485 (47.42%), Postives = 327/485 (67.42%), Query Frame = 0

Query:   47 SIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALELA 532
            +IH+L    ++G+ +   +T   L+RI+  +G V +++ ++ D A AQA+  D ++   DT++   PLLG+P+A+KDN+CT G+ TT AS++L  ++P Y+AT V +LK AG +L GK NMDEF MGS+TE+SGY +TRNP DL R PGGSSGGSAAAVA+   + +LG+DTGGSIRQPA+  G VGLKPTYGRVSR+GL+A+ SS D IGPLT++V D A ++ V+AG D   D+T++  P   DF  A++       K + G++V L KE     ++  V  AVR+AV  LE LGA V +VS+P+     A+YY+   SEAS+NLARYDGV+YG R    +    + + SR  GFG EVK+RI+LGT++LSAGY +AYY K QQ R+++ + F E+F   D++  PT+PT A+ +G+ +   + MY  D+FT+  +LAG+P ISLP     E   +LP+GLQ++G+ F E  I+  A A E A
Sbjct:    7 TIHELHNMLKKGETTSVAITDSVLKRIDAVEGKVKSYITVTADIARAQAEAADKRIKAGDTSS---PLLGIPIAIKDNMCTEGIATTCASKILGNFVPPYNATVVAKLKQAGSVLCGKPNMDEFAMGSSTENSGYFITRNPWDLDRIPGGSSGGSAAAVAADECIGSLGSDTGGSIRQPAACCGVVGLKPTYGRVSRFGLVAFASSLDQIGPLTKDVTDTALLMNVIAGHD-PKDSTSADIP-APDFTKALK-------KDMKGLRVGLPKEYFIEGMDPQVDKAVREAVRTLEALGAKVSDVSLPHTKYAVATYYILATSEASSNLARYDGVKYGYRAASPKDLLDMYMRSRDEGFGPEVKRRIMLGTYALSAGYYEAYYKKGQQARTLIKRDFDEAFKTVDLIATPTAPTAAFKIGEKSADPLQMYLSDIFTISVNLAGIPGISLPCGFTAE---NLPIGLQVLGRNFDEESIIHAAYAYEQA 476

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: GBC82728.1 (Glutamyl-tRNA(Gln) amidotransferase subunit A [bacterium HR10])

HSP 1 Score: 428.7 bits (1101), Expect = 2.600e-116
Identity = 238/485 (49.07%), Postives = 333/485 (68.66%), Query Frame = 0

Query:   47 SIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALELA 532
            ++  L E+ R    SV  V   TL+RIE  +G +GAFL ++ D AL +A+ LD +LA  D      PL+G+P+A+KDNICT G+ TT AS++L  ++P Y+ATAV RL  AG I+IGKTN DEF MGS+ E+S + + RNP D  R PGGSSGGS AAVA+ + + ALG+DTGGS+R PA++ G VGLKPTYGRVSRYGL+AYGSS D IGP+T+ V DAARVL V+AG D   D+T+S  P + D++ A+       +  + GV++ + +E     ++E V  AV +A++    LGA ++EV +P+ +   A YY+   +EAS+NLARYDGVRYG R +GA + + +   +R  GFG EVK+RI+LGT+ LSAGY DAYYLK+ ++R+++ + F E+F   D++V PTSPTVA+ LG+     + MY  D++T+ A+LA +PAIS+P+   REG   LP+GLQ+  + F EA +L+VA A E A
Sbjct:    7 TVDRLHEALRARATSVREVCARTLERIEALNGRLGAFLTINRDEALQRAEDLDRELARGDWR----PLMGVPVAIKDNICTRGLRTTCASKILHNFVPPYNATAVERLLEAGAIIIGKTNCDEFAMGSSNENSAFGIVRNPWDAERVPGGSSGGSGAAVAADLCVVALGSDTGGSVRLPAAFCGVVGLKPTYGRVSRYGLVAYGSSLDQIGPITKTVADAARVLQVIAGRD-PRDSTSSNHP-VPDYLAAL-------NGEINGVRLGVPREYFGPGLDEEVKEAVWRAIHRFADLGAEIVEVRLPHTEYAIACYYIIATAEASSNLARYDGVRYGYRAEGARTLREMYRRTRHEGFGAEVKRRIMLGTYVLSAGYYDAYYLKALKVRALIERDFREAFARCDLIVGPTSPTVAFRLGEKMADPLAMYLSDVYTIMANLAAIPAISIPVGLSREG---LPIGLQLHARPFEEAMLLRVAHAYERA 475

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: SNB61929.1 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Thermoflexus hugenholtzii JAD2])

HSP 1 Score: 428.3 bits (1100), Expect = 3.400e-116
Identity = 244/487 (50.10%), Postives = 332/487 (68.17%), Query Frame = 0

Query:   47 SIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLA--MKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALELA 532
            +IH+ +E  RRG+ S   VT+  L RIE  D  + A++ ++ + ALAQA+  D +     +D +T++ PL G+PLA+KD IC  GV  T  SR+L+ ++P YDATAV RL+ AG + +GKTN DEF MGS+TE+S +  TRNP +  R PGGSSGGSAAAVA+ +   ALGTDTGGS+RQPA+  G VGLKPTYGRVSRYGL+AYGSS D IGP+T++V DAA +L ++AG D   D T+  AP + D+  A+          L G++V +  E     ++  V  AVR+A+ +L  LGA V+EVS+P+      +YY+   +EASANLARYDGV+YGLR +G     T  L +RG+GFG EVK+RI+LGT++LSAGY DAYYLK+Q++R+++ Q F  +F   DV+VCPTSPT A+ LG+     + MY  D+FT+ A+LAG+  IS+P   G +GE  LP+GLQI+G    E +IL+VA A E A
Sbjct:    7 TIHETLEHLRRGEISAVEVTRAYLDRIEALDPFLHAYITVTPEEALAQAREADARWTAWRRDPSTSLPPLNGIPLAIKDVICVRGVRCTCGSRILENFVPPYDATAVARLREAGAVFLGKTNTDEFAMGSSTENSAFGPTRNPWNPERVPGGSSGGSAAAVAADLCAGALGTDTGGSVRQPAALCGVVGLKPTYGRVSRYGLVAYGSSLDQIGPITKDVRDAALLLQIIAGPD-PRDATSWPAP-VPDYTQAL-------IPDLRGMRVGVPPEYFIPGMQPEVERAVREAIEVLAELGAEVIEVSLPHTRYALPTYYLIAPAEASANLARYDGVKYGLRIQGETIWDTYRL-TRGNGFGPEVKRRIMLGTYALSAGYYDAYYLKAQKVRTLIRQDFERAFERVDVIVCPTSPTTAFRLGERTADPLQMYLADIFTITANLAGICGISVPC--GFDGE-GLPIGLQILGPALGEEKILRVAYAYEQA 480

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: WP_088570691.1 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [Thermoflexus hugenholtzii])

HSP 1 Score: 428.3 bits (1100), Expect = 3.400e-116
Identity = 244/487 (50.10%), Postives = 332/487 (68.17%), Query Frame = 0

Query:   47 SIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLA--MKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALELA 532
            +IH+ +E  RRG+ S   VT+  L RIE  D  + A++ ++ + ALAQA+  D +     +D +T++ PL G+PLA+KD IC  GV  T  SR+L+ ++P YDATAV RL+ AG + +GKTN DEF MGS+TE+S +  TRNP +  R PGGSSGGSAAAVA+ +   ALGTDTGGS+RQPA+  G VGLKPTYGRVSRYGL+AYGSS D IGP+T++V DAA +L ++AG D   D T+  AP + D+  A+          L G++V +  E     ++  V  AVR+A+ +L  LGA V+EVS+P+      +YY+   +EASANLARYDGV+YGLR +G     T  L +RG+GFG EVK+RI+LGT++LSAGY DAYYLK+Q++R+++ Q F  +F   DV+VCPTSPT A+ LG+     + MY  D+FT+ A+LAG+  IS+P   G +GE  LP+GLQI+G    E +IL+VA A E A
Sbjct:   23 TIHETLEHLRRGEISAVEVTRAYLDRIEALDPFLHAYITVTPEEALAQAREADARWTAWRRDPSTSLPPLNGIPLAIKDVICVRGVRCTCGSRILENFVPPYDATAVARLREAGAVFLGKTNTDEFAMGSSTENSAFGPTRNPWNPERVPGGSSGGSAAAVAADLCAGALGTDTGGSVRQPAALCGVVGLKPTYGRVSRYGLVAYGSSLDQIGPITKDVRDAALLLQIIAGPD-PRDATSWPAP-VPDYTQAL-------IPDLRGMRVGVPPEYFIPGMQPEVERAVREAIEVLAELGAEVIEVSLPHTRYALPTYYLIAPAEASANLARYDGVKYGLRIQGETIWDTYRL-TRGNGFGPEVKRRIMLGTYALSAGYYDAYYLKAQKVRTLIRQDFERAFERVDVIVCPTSPTTAFRLGERTADPLQMYLADIFTITANLAGICGISVPC--GFDGE-GLPIGLQILGPALGEEKILRVAYAYEQA 496

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: XP_024519436.1 (glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Selaginella moellendorffii])

HSP 1 Score: 428.3 bits (1100), Expect = 3.400e-116
Identity = 244/499 (48.90%), Postives = 328/499 (65.73%), Query Frame = 0

Query:   32 ISRNPSILLSASSPNSIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQ-APELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALE 530
            I  +P+I  S  + + I  L    R+ + S   +  E L R+ +++  V +FL +S   AL +A  +D +LA  D      PL G+P+A+KDN+CT G+P+T  SR+L GY P YDATAV RLK +G +LIGKTN+DEFGMGS+TESS Y VT NP DL+R PGGSSGGSAAAVA+G    ALG+DTGGSIRQPAS+ G VGLKPTYGRVSR+GLMAY SS DV+G L  +V D + +L  +AG D A  T++S+  P     +   +E+ G    PLAG+K  ++KET+   VE  VA  V+ AV  LE+LGA V EVS+P       +YYV   SEAS+NL+RYDG+RYG R   A+    +   SRG GFG EVK+RIL+GT++LSAGY DA+Y ++QQ+R+++ Q F ++     +LV P +P+ A+ +G+     + MY  DL TV  ++AGLPA+SLP     +  S LPVGLQ+IG  F E ++L+V    E
Sbjct:   55 ILASPAIPRSKPASSQISRLQTQLRKKEISALEIVTEYLDRLREKEPDVKSFLHISSS-ALDEAAEIDGRLARGDDPG---PLAGIPIAIKDNLCTRGMPSTGGSRILDGYRPPYDATAVKRLKESGAVLIGKTNLDEFGMGSSTESSAYQVTSNPWDLSRVPGGSSGGSAAAVAAGQCACALGSDTGGSIRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVVGCLGTSVDDVSLLLTAIAGHDPADATSSSKVVPNYLKALVPAKELPG---NPLAGMKFGIIKETIGEGVEPAVAQVVKNAVVHLEKLGAVVQEVSLPTFSLGLPAYYVLAASEASSNLSRYDGIRYGPRVV-ADELNAMYGASRGQGFGAEVKRRILMGTYALSAGYYDAFYKRAQQVRTLIQQDFKKALEDGHILVSPVAPSPAFKIGEKVLDPLSMYLGDLMTVNVNMAGLPALSLPCGLIEDEGSKLPVGLQLIGNAFEEEELLRVGHIFE 545

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: KRT70866.1 (glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) [candidate division NC10 bacterium CSP1-5])

HSP 1 Score: 427.2 bits (1097), Expect = 7.700e-116
Identity = 235/485 (48.45%), Postives = 333/485 (68.66%), Query Frame = 0

Query:   47 SIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALELA 532
            +IH+L    RR + +   V    L+RI Q +G + A++A++G  AL  A  LD +    + A    PL G+PLA+KD ICT  VPTT +SR+L G+IP YDAT + RL  AG +L+GKTNMDEF MGS+TE+SGY VTRNP DL R PGGSSGGSAAAVA+ +  AALG+DTGGSIRQPA++ G VG+KPTYGRVSRYGL+A+ SS D IGP+T++V DAA +L V+AG D   D+T+   P + D+V  +        + + G+++ + KE     ++  V +A+R A+N+LE LGA    +S+P+ +   A+YY+   +EAS+NLARYD V+YG R + A+   ++ + SR +GFG EVK+RI+LGT++LSAGY DAYYLK+ ++R+++ + F ++F   +V++ PT+PT A+ LG+     + MY  D+FT+ A+LAG+P + LP    R G   LP+GLQ++G+ F EA +LQVA A E A
Sbjct:    7 TIHELQGLLRRREVTAKQVLMAFLKRIAQVEGKIQAYMAVTGLEALRMASRLDRRRHAGEDAG---PLAGIPLAIKDVICTQDVPTTCSSRILDGFIPPYDATVMRRLNQAGMVLLGKTNMDEFAMGSSTENSGYKVTRNPWDLDRVPGGSSGGSAAAVAADLCTAALGSDTGGSIRQPAAFCGIVGVKPTYGRVSRYGLVAFASSLDQIGPMTKDVRDAAILLGVIAGHDTC-DSTSVNVP-VPDYVAQL-------GREVTGLRIGIPKEYFIEGMDPEVETAIRAAINVLESLGAKAESISLPHTEYAVATYYLVATAEASSNLARYDAVKYGFRAREAKDLLSMYMKSRQNGFGAEVKRRIMLGTYALSAGYYDAYYLKALKVRTLIRKDFEDTFKRCEVILTPTAPTPAFRLGEKTADPLTMYLSDIFTISANLAGIPGVCLPCGFTRAG---LPIGLQLLGKPFDEATLLQVAFAYEQA 476

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: XP_024529477.1 (glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 426.8 bits (1096), Expect = 1.000e-115
Identity = 243/499 (48.70%), Postives = 328/499 (65.73%), Query Frame = 0

Query:   32 ISRNPSILLSASSPNSIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQ-APELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALE 530
            I  +P+I  S  + + I  L    R+ + S   +  E L R+ +++  V +FL +S   AL +A  +D +LA  D      PL G+P+A+KDN+CT G+P+T  SR+L GY P YDATAV RLK +G +LIGKTN+DEFGMGS+TESS Y VT NP DL+R PGGSSGGSAAAVA+G    ALG+DTGGSIRQPAS+ G VGLKPTYGRVSR+GLMAY SS DV+G L  +V D + +L  +AG D A  T++S+  P     +   +E+ G    PLAG+K  ++KET+   VE  VA  V+ AV  LE+LGA V EVS+P       +YYV   SEAS+NL+RYDG+RYG R   A+    +   SRG GFG EVK+RIL+GT++LSAGY DA+Y ++QQ+R+++ Q F ++     +L+ P +P+ A+ +G+     + MY  DL TV  ++AGLPA+SLP     +  S LPVGLQ+IG  F E ++L+V    E
Sbjct:   73 ILASPAIPRSKPAASQISRLQTQLRKKEISAVEIVTEYLDRLREKEPDVKSFLHISSS-ALDEAAEIDGRLARGDDPG---PLAGIPIAIKDNLCTQGMPSTGGSRILDGYRPPYDATAVKRLKESGAVLIGKTNLDEFGMGSSTESSAYQVTSNPWDLSRVPGGSSGGSAAAVAAGQCACALGSDTGGSIRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVVGCLGTSVDDVSLLLNAIAGHDPADATSSSKVVPNYLKALVPAKELPG---NPLAGMKFGIIKETIGEGVEPAVAQVVKNAVVHLEKLGAVVQEVSLPTFSLGLPAYYVLAASEASSNLSRYDGIRYGPRVV-ADELNAMYGASRGQGFGAEVKRRILMGTYALSAGYYDAFYKRAQQVRTLIQQDFKKALEDGHILLSPVAPSPAFKIGEKVLDPLSMYLGDLMTVNVNMAGLPALSLPCGLIEDEGSKLPVGLQLIGNAFEEEELLRVGHIFE 563

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: XP_024529476.1 (glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 426.8 bits (1096), Expect = 1.000e-115
Identity = 243/499 (48.70%), Postives = 328/499 (65.73%), Query Frame = 0

Query:   32 ISRNPSILLSASSPNSIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQ-APELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALE 530
            I  +P+I  S  + + I  L    R+ + S   +  E L R+ +++  V +FL +S   AL +A  +D +LA  D      PL G+P+A+KDN+CT G+P+T  SR+L GY P YDATAV RLK +G +LIGKTN+DEFGMGS+TESS Y VT NP DL+R PGGSSGGSAAAVA+G    ALG+DTGGSIRQPAS+ G VGLKPTYGRVSR+GLMAY SS DV+G L  +V D + +L  +AG D A  T++S+  P     +   +E+ G    PLAG+K  ++KET+   VE  VA  V+ AV  LE+LGA V EVS+P       +YYV   SEAS+NL+RYDG+RYG R   A+    +   SRG GFG EVK+RIL+GT++LSAGY DA+Y ++QQ+R+++ Q F ++     +L+ P +P+ A+ +G+     + MY  DL TV  ++AGLPA+SLP     +  S LPVGLQ+IG  F E ++L+V    E
Sbjct:   55 ILASPAIPRSKPAASQISRLQTQLRKKEISAVEIVTEYLDRLREKEPDVKSFLHISSS-ALDEAAEIDGRLARGDDPG---PLAGIPIAIKDNLCTQGMPSTGGSRILDGYRPPYDATAVKRLKESGAVLIGKTNLDEFGMGSSTESSAYQVTSNPWDLSRVPGGSSGGSAAAVAAGQCACALGSDTGGSIRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVVGCLGTSVDDVSLLLNAIAGHDPADATSSSKVVPNYLKALVPAKELPG---NPLAGMKFGIIKETIGEGVEPAVAQVVKNAVVHLEKLGAVVQEVSLPTFSLGLPAYYVLAASEASSNLSRYDGIRYGPRVV-ADELNAMYGASRGQGFGAEVKRRILMGTYALSAGYYDAFYKRAQQVRTLIQQDFKKALEDGHILLSPVAPSPAFKIGEKVLDPLSMYLGDLMTVNVNMAGLPALSLPCGLIEDEGSKLPVGLQLIGNAFEEEELLRVGHIFE 545

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: WP_093227001.1 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [Thermoflavimicrobium dichotomicum] >SFI59426.1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [Thermoflavimicrobium dichotomicum])

HSP 1 Score: 426.4 bits (1095), Expect = 1.300e-115
Identity = 243/473 (51.37%), Postives = 334/473 (70.61%), Query Frame = 0

Query:   59 QASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALELA 532
            + S   + +E+L+RIE+ DG V AFL +  + A  +A  LD +LA ++       L  LP+ +KDN+CT G+ TT AS++L  Y P Y+AT V +L AA  I +GKTNMDEF MGS+ E+SG++ T NP DL R PGGSSGGSAAAVA+G V  ALG+DTGGSIRQPA++ G VGLKPTYGRVSRYGL+AY SS D IGPLT+NV DAA VL V+AG D A D+T+++  ++ D++  +       +  + G+KVA+ KE +   +E GV   V+ A+  LE LGA + EVS+P+ D   A+YY+   +EAS+NLARYDGVRYG+R +G ++   + L +R  GFG EVK+RI+LGT++LS+GY DAYYLK+Q++R+++ Q F + F   DV+V PT+PT+A+ +G+  ++ + MY +D+ T+P +LAGLPAIS+P  G  EG   +PVGLQIIG+ F EA IL+VA A E A
Sbjct:   19 ELSAKDLVEESLKRIEEVDGQVKAFLTVDEEGARKRADQLDAELAKEEKRGL---LAALPVGLKDNLCTEGLRTTCASKLLANYQPIYNATVVEKLAAAQTITVGKTNMDEFAMGSSNENSGFYPTHNPWDLERVPGGSSGGSAAAVAAGEVYFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLVAYASSLDQIGPLTKNVEDAAYVLQVIAGHD-AKDSTSAKV-DVPDYLSHL-------TGDIRGLKVAVPKEMMGEGIEPGVREQVKNALAKLEELGAVIEEVSLPHADYAVATYYLIAPAEASSNLARYDGVRYGVRKEG-KNLLDLYLETRSQGFGPEVKRRIMLGTYALSSGYYDAYYLKAQKVRTLIRQDFEQIFAKYDVVVGPTAPTIAFKIGEKIDNPLTMYLNDILTIPVNLAGLPAISVP-CGLSEG---MPVGLQIIGKAFDEATILRVAHAFEQA 474

[Close]

BLAST of NO06G02530 vs. NCBI_GenBank
Match: XP_006652900.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial isoform X1 [Oryza brachyantha])

HSP 1 Score: 426.0 bits (1094), Expect = 1.700e-115
Identity = 227/491 (46.23%), Postives = 335/491 (68.23%), Query Frame = 0

Query:   39 LLSASSPNSIHDLVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDTKLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATAVVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYGSSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREMEGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRGSGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADVLVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGREGESSLPVGLQIIGQRFAEAQILQVAKALE 530
            L +  +P++I  + ES   G+ +   +T + L R+ + + +V +F+ ++   A  +A+ LD ++A  +   AV PL G+ + VKDN+CTA +P+T  SR+L GY P+YDATAV RL+ AG I++GKTN+DEFGMGSTTE SG+ +T+NP D +R PGGSSGGSA+AV++   + +LG+DTGGS+RQPAS+ G VGLKPTYGRVSR+GLMAY SS DV+G    +V D A +L+V+AG D    T++S   ++ D+   +  ++   SKPL+G+++ ++++TL   VE GV S+++ A + LE+LG+ V EVS+P       +YY+   SEAS+NL+RYDG+RYG R   A+    +  GSR +G G EVK RIL+GT++LSAGY DAYY ++QQ+R+++ +SF E+    D+LV P +P+ AY +G+     + MYA D+ TV  +LAGLPA+ +P      G + LPVGLQ+IG  F+E  +L+V    E
Sbjct:   39 LATGPAPSTILSIRESLLSGERTAADITADYLSRLRRTEPSVRSFIHVADAAAEREAEDLDRRIA-TEGQDAVGPLAGVLVGVKDNLCTANMPSTGGSRILDGYRPAYDATAVRRLREAGAIVVGKTNLDEFGMGSTTEGSGFQITKNPWDDSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVVGCFGSSVFDTAAILSVIAGTDKMDSTSSSH--DVLDYKSELVPLDLLESKPLSGMRIGIIQQTLGEGVETGVISSIKDAASHLEQLGSVVEEVSLPSFSLGLPAYYILASSEASSNLSRYDGIRYG-RQVSADDLNELYGGSRANGLGHEVKMRILMGTYALSAGYYDAYYKRAQQVRTLVKKSFKEALDRYDILVSPAAPSAAYKIGEKTNDPLAMYAGDIMTVNVNLAGLPALVVPCGFVEGGSAGLPVGLQMIGSPFSEGNLLRVGHIFE 525

The following BLAST results are available for this feature:

BLAST of NO06G02530 vs. NCBI_GenBank

BLAST of NO06G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
OGW34044.1	2.000e-116	47.42	aspartyl/glutamyl-tRNA amidotransferase subunit A ...	[more]
GBC82728.1	2.600e-116	49.07	Glutamyl-tRNA(Gln) amidotransferase subunit A [bac...	[more]
SNB61929.1	3.400e-116	50.10	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s...	[more]
WP_088570691.1	3.400e-116	50.10	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun...	[more]
XP_024519436.1	3.400e-116	48.90	glutamyl-tRNA(Gln) amidotransferase subunit A, chl...	[more]
KRT70866.1	7.700e-116	48.45	glutamyl-tRNA(Gln) amidotransferase subunit A (Glu...	[more]
XP_024529477.1	1.000e-115	48.70	glutamyl-tRNA(Gln) amidotransferase subunit A, chl...	[more]
XP_024529476.1	1.000e-115	48.70	glutamyl-tRNA(Gln) amidotransferase subunit A, chl...	[more]
WP_093227001.1	1.300e-115	51.37	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun...	[more]
XP_006652900.1	1.700e-115	46.23	PREDICTED: glutamyl-tRNA(Gln) amidotransferase sub...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000207	NSK000207	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G02530.1	NO06G02530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651539	gene_6572	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100145g14	gene4257	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G02530.1	NO06G02530.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G02530 ID=NO06G02530|Name=NO06G02530|organism=Nannochloropsis oceanica|type=gene|length=1605bp
ATGCGTCCATCACTTTATCCACGACTCCTGCTTTTCCTTGCCGTCGCCGT
CCACACGACAACCGCCTTCCACCCTCCACCAAAACTCCGCCAGATTTCAA
GAAATCCTTCGATCCTCCTCTCTGCTTCCTCCCCCAACTCCATCCATGAT
CTAGTCGAGAGTTTCCGCCGAGGCCAAGCGAGCGTCACCGGCGTAACCAA
GGAAACCTTGCAGCGGATCGAGCAACAAGACGGGGCAGTAGGGGCCTTTC
TCGCCTTGAGTGGAGATCACGCCCTCGCGCAAGCGAAAATACTCGACACT
AAACTTGCCATGAAGGATACAGCTACCGCGGTATTGCCCTTATTAGGCCT
ACCCTTGGCAGTCAAGGATAACATCTGTACCGCGGGCGTTCCCACTACTG
CAGCCTCCCGTGTCTTGCAAGGCTACATCCCATCCTACGACGCTACAGCC
GTCGTCCGCCTCAAGGCCGCCGGCTGCATATTGATTGGAAAGACAAACAT
GGACGAGTTCGGAATGGGCTCCACGACGGAATCCTCTGGTTATCACGTCA
CGCGCAACCCTCGCGACCTCACCCGTTCTCCCGGTGGTTCCTCTGGAGGC
TCGGCCGCAGCGGTGGCAAGTGGCATGGTGCTCGCCGCACTAGGCACGGA
CACAGGGGGGTCGATTCGACAGCCCGCATCGTGGACGGGGACGGTAGGAT
TGAAGCCTACGTATGGGAGAGTGTCAAGGTACGGGTTGATGGCGTATGGG
TCGAGTACGGATGTGATAGGTCCCTTGACACAAAATGTAATGGATGCTGC
TCGAGTGCTTGCCGTGCTTGCAGGTGAGGATCATGCGCACGATACTACCA
CGAGTCAAGCGCCTGAGTTGCAGGATTTTGTGGGGGCTGTGCGGGAGATG
GAGGGGAAGGGAAGTAAGCCACTAGCTGGGGTGAAGGTGGCATTGGTGAA
GGAAACACTGCACAGTAGGGTGGAGGAGGGAGTGGCATCGGCGGTACGAA
AGGCGGTGAATCTGCTGGAGCGATTGGGAGCGACAGTGATGGAGGTGTCG
ATTCCTTATTTAGACGCGCATTGTGCTTCCTACTATGTGAATGTGTTGTC
GGAGGCCAGTGCGAATCTGGCGCGGTACGACGGGGTGCGGTATGGGTTGA
GGCCAAAGGGGGCAGAGAGCGCCAAGACGGTCATGTTGGGGAGTAGAGGA
AGCGGATTTGGGGAGGAGGTAAAGCAGAGAATATTGCTGGGGACGTTCTC
GTTGAGCGCCGGTTATTCAGACGCGTACTATTTGAAGAGCCAGCAGTTGC
GGTCGGTTTTGTCGCAGTCATTCAGCGAGAGTTTTGGGGTGGCGGATGTG
TTGGTGTGTCCGACATCGCCGACAGTGGCGTATCCATTGGGGAAGGCGGC
GGAAAGTAAGGTTGATATGTATGCAGACGATTTGTTCACGGTCCCTGCCA
GCCTGGCGGGACTGCCGGCAATCAGCTTACCTATCACGGGAGGGAGGGAG
GGGGAGTCGTCGCTTCCGGTGGGATTGCAAATTATCGGGCAGCGATTTGC
TGAAGCACAAATTTTGCAGGTGGCAAAGGCACTAGAACTGGCGCAAGGGA
GCTAG

protein sequence of NO06G02530.1

>NO06G02530.1-protein ID=NO06G02530.1-protein|Name=NO06G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MRPSLYPRLLLFLAVAVHTTTAFHPPPKLRQISRNPSILLSASSPNSIHD
LVESFRRGQASVTGVTKETLQRIEQQDGAVGAFLALSGDHALAQAKILDT
KLAMKDTATAVLPLLGLPLAVKDNICTAGVPTTAASRVLQGYIPSYDATA
VVRLKAAGCILIGKTNMDEFGMGSTTESSGYHVTRNPRDLTRSPGGSSGG
SAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRYGLMAYG
SSTDVIGPLTQNVMDAARVLAVLAGEDHAHDTTTSQAPELQDFVGAVREM
EGKGSKPLAGVKVALVKETLHSRVEEGVASAVRKAVNLLERLGATVMEVS
IPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPKGAESAKTVMLGSRG
SGFGEEVKQRILLGTFSLSAGYSDAYYLKSQQLRSVLSQSFSESFGVADV
LVCPTSPTVAYPLGKAAESKVDMYADDLFTVPASLAGLPAISLPITGGRE
GESSLPVGLQIIGQRFAEAQILQVAKALELAQGS*

Synonyms

Publications