NO06G01480, NO06G01480 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G01480
Unique Name	NO06G01480
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2840
Alignment location	chr6:469202..472041 +

Link to JBrowse

Properties


Property Name	Value
Description	Recombination activating protein 1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:469202..472041 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0008152	metabolic process

Homology

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: EWM26177.1 (recombination activating protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 153.3 bits (386), Expect = 3.700e-33
Identity = 77/114 (67.54%), Postives = 86/114 (75.44%), Query Frame = 0

Query:    7 GAVVRAAAPPSPFPLPLESLA-LLDPAGQQAFIDKFAELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGLR 120
            GA   AAA P P P  L++LA LLDP GQQ FI+K  ELV C MCK FL+DPVAVPCSHTFCR C+DDH+SDNS CPEC  P Y KD+R NRA+  VLDSF DI RAL +QGLR
Sbjct:   12 GAEKGAAASP-PLPCSLDTLARLLDPKGQQDFINKIEELVSCSMCKHFLKDPVAVPCSHTFCRSCLDDHMSDNSHCPECEHPVYPKDVRSNRALKSVLDSFYDIDRALRQQGLR 124

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_017332696.1 (PREDICTED: nuclear factor 7, brain-like isoform X2 [Ictalurus punctatus])

HSP 1 Score: 76.3 bits (186), Expect = 5.700e-10
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 0

Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGLR 120
            A+L++CP+C   L+DPV +PC H +CR+CI +H++ N   + CPEC  P  + D+R NR +  ++D+ KD  R  E Q LR
Sbjct:    3 AKLIRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 81

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_017570039.1 (PREDICTED: zinc-binding protein A33-like [Pygocentrus nattereri])

HSP 1 Score: 74.3 bits (181), Expect = 2.200e-9
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0

Query:   45 VQCPMCKRFLQDPVAVPCSHTFCRICIDDHL---SDNSFCPECAIPAYRKDMRPNRAMNCVLDS 106
            +QCP+C   L+DPV +PC H++CR+C+  HL   +D S CPEC  P  R D+R NR +  ++D+
Sbjct:    9 IQCPVCLNTLRDPVCLPCEHSYCRVCLTRHLAVSADESTCPECRTPFSRADIRVNRTLRNIVDA 72

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_017332687.1 (PREDICTED: nuclear factor 7, brain-like isoform X1 [Ictalurus punctatus])

HSP 1 Score: 73.2 bits (178), Expect = 4.800e-9
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 0

Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGLR 120
            ++ ++CP+C   L+DPV +PC H +CR+CI +H++ N   + CPEC  P  + D+R NR +  ++D+ KD  R  E Q LR
Sbjct:    6 SQQIRCPVCWNDLRDPVCLPCEHFYCRVCITEHMTRNAPDTRCPECRRPFTQNDIRVNRVLRNLVDAAKDHLR--EHQALR 84

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_020331382.1 (nuclear factor 7, brain-like [Oncorhynchus kisutch])

HSP 1 Score: 72.8 bits (177), Expect = 6.300e-9
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0

Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D+ R  EE GL
Sbjct:    6 SEQLQCPVCLCLFTDPVSLPCDHTFCRPCISAHLLQSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADVAREEEESGL 83

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_024272420.1 (nuclear factor 7, brain-like isoform X1 [Oncorhynchus tshawytscha] >XP_024260437.1 nuclear factor 7, brain-like isoform X1 [Oncorhynchus tshawytscha])

HSP 1 Score: 72.8 bits (177), Expect = 6.300e-9
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0

Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D+ R  EE GL
Sbjct:    6 SEQLQCPVCLCLFTDPVSLPCDHTFCRPCISAHLLQSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADVAREEEESGL 83

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_024272421.1 (nuclear factor 7, brain-like isoform X2 [Oncorhynchus tshawytscha] >XP_024260438.1 nuclear factor 7, brain-like isoform X2 [Oncorhynchus tshawytscha])

HSP 1 Score: 72.8 bits (177), Expect = 6.300e-9
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0

Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D+ R  EE GL
Sbjct:    6 SEQLQCPVCLCLFTDPVSLPCDHTFCRPCISAHLLQSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADVAREEEESGL 83

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_014039013.1 (PREDICTED: nuclear factor 7, brain-like [Salmo salar])

HSP 1 Score: 71.2 bits (173), Expect = 1.800e-8
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0

Query:   42 AELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHL-----SDNSFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQGL 119
            +E +QCP+C     DPV++PC+HTFCR CI  HL        S CPEC  P  +KD+R +R    VL +  D  R  EE GL
Sbjct:    6 SEQLQCPVCLCVFTDPVSLPCNHTFCRPCISAHLLRSSAKSQSRCPECRGPFSQKDLRAHR----VLTNMADAAREEEESGL 83

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_015195292.1 (PREDICTED: tripartite motif-containing protein 52-like isoform X1 [Lepisosteus oculatus])

HSP 1 Score: 70.1 bits (170), Expect = 4.100e-8
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 0

Query:   43 ELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQ 117
            E +QCP+C     DPV +PC HTFCR C++ +L+ +     CPEC  P  R+D R NR +  + D  +     + EQ
Sbjct:    7 EELQCPVCLGLFSDPVTLPCGHTFCRGCLESYLATDVPVHLCPECRAPIPRRDFRTNRVLRNMADRARQEEEKVSEQ 83

[Close]

BLAST of NO06G01480 vs. NCBI_GenBank
Match: XP_015195293.1 (PREDICTED: tripartite motif-containing protein 52-like isoform X2 [Lepisosteus oculatus])

HSP 1 Score: 70.1 bits (170), Expect = 4.100e-8
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 0

Query:   43 ELVQCPMCKRFLQDPVAVPCSHTFCRICIDDHLSDN---SFCPECAIPAYRKDMRPNRAMNCVLDSFKDIRRALEEQ 117
            E +QCP+C     DPV +PC HTFCR C++ +L+ +     CPEC  P  R+D R NR +  + D  +     + EQ
Sbjct:    7 EELQCPVCLGLFSDPVTLPCGHTFCRGCLESYLATDVPVHLCPECRAPIPRRDFRTNRVLRNMADRARQEEEKVSEQ 83

The following BLAST results are available for this feature:

BLAST of NO06G01480 vs. NCBI_GenBank

BLAST of NO06G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26177.1	3.700e-33	67.54	recombination activating protein 1 [Nannochloropsi...	[more]
XP_017332696.1	5.700e-10	43.21	PREDICTED: nuclear factor 7, brain-like isoform X2...	[more]
XP_017570039.1	2.200e-9	45.31	PREDICTED: zinc-binding protein A33-like [Pygocent...	[more]
XP_017332687.1	4.800e-9	40.74	PREDICTED: nuclear factor 7, brain-like isoform X1...	[more]
XP_020331382.1	6.300e-9	45.12	nuclear factor 7, brain-like [Oncorhynchus kisutch...	[more]
XP_024272420.1	6.300e-9	45.12	nuclear factor 7, brain-like isoform X1 [Oncorhync...	[more]
XP_024272421.1	6.300e-9	45.12	nuclear factor 7, brain-like isoform X2 [Oncorhync...	[more]
XP_014039013.1	1.800e-8	45.12	PREDICTED: nuclear factor 7, brain-like [Salmo sal...	[more]
XP_015195292.1	4.100e-8	38.96	PREDICTED: tripartite motif-containing protein 52-...	[more]
XP_015195293.1	4.100e-8	38.96	PREDICTED: tripartite motif-containing protein 52-...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000304	NSK000304	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G01480.1	NO06G01480.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
Naga_100072g10	gene4342	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G01480.1	NO06G01480.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G01480 ID=NO06G01480|Name=NO06G01480|organism=Nannochloropsis oceanica|type=gene|length=2840bp
ATGAACGAAGCTGTCTGCGGTGCCGTGGTGAGGGCGGCAGCCCCACCCTC
TCCTTTTCCCCTCCCTCTAGAGAGCCTGGCACTACTAGACCCCGCAGGGC
AACAAGCCTTTATCGACAAGTTTGCGGAGCTCGTACAGTGTCCCATGTGg
taagtcggtggcggccacgcttttcttcggcctcgttattcgtcgcggta
ctcatccctacctccgtttccctccccccactcctcagCAAGCGTTTCCT
CCAAGACCCCGTCGCCGTTCCTTGCAGCCACACCTTCTGCCGCATCTGCA
TCGACGACCACCTGAGCGATAATAGTTTCTGCCCTGAATGCGCGATACCA
GCCTATCGAAAAGACATGAGACCGAACCGAGCAATGAATTGTGTGTTGGA
TTCTTTCAAGGACATACGACGGGCCTTAGAGGAACAGGGGCTACGTCGTC
CTCCTCCTCCGCTAGTAGCTCATTCTTCCTCTGCTTCTTTGGCTAGGGGC
GGGGTTTTGTTGCCGGGTTCGCCTTCTGGGAGAAGTAGAGGCTTAGGAGA
AGGAGAAGGAGGAAAAGAAGGAGGGCGGGGGAGGATGCTAGGGGAAGAGT
CAGCAACGCATGAGACGCAGGATGATCCTTTTCCAGCTTTGTTGGAAGAG
GAGAATGGGAAGGAAAAGAAAGAGAAGAAGGTAGGAGGAGACGGAGGGAT
CAATGAGAACGAGGAGGAAAAGAAGTCAAGAGGTTCGTCGTTAGGCATGA
ATGAAGGCGGCAAGATTGTGCTAGAGGAGGGCGACGACGAGAAGAAGAAG
CAAGAGGGGGGGGAGAAGGAGGTGATTATTATGGGAGTTGGTTCTGCTGT
CGCTCATGAGGGAGGAAGGGAGGAAGGGGGGGAAGGGGAGGGTACGCCAC
TGGTAGACTTAACGGACACTTCACCCGAGAAATCGCACCGGCCGTCGTCT
TGGCCTGGCGTGAAGCAAGAAGGTAGGGGAGAAGGAGGTGGTGGAGGAGG
AGGGACATCCGGTGGTGGTAGCTTTTTCTCTAAGATCGTTGATAAGGCAG
GGCAGTGGTTGGGTCGTGGACGTGCCAAGACCAGCAGCAGCAGCAACATC
TATAGACATAGCGGAGTAGAGACACCGAAAGGTTCCTTCTCAGCGTCTGC
TGCTGCTGCTACTGCGGCTTCCACCTCCGCCTCTTCCTCCTTTCCCGACG
ACGACATGGCGGCAGCAACTCAGACACGCATCACCCAGTATATAAATCCA
CGCCAACAGCTACCGCTACAGCAGCAGGACCAGCATCAGCGACAAAAGCA
ACTGGATCGGCAACAGCAACAGCAGAATCACAAGCGGAAAGAATGGGGAA
GAGGAGGAGGACAAGGAGAAAGAGTGGGAGGAGGGGGTTGTAGCAGCGCC
TGGAAGCACCCTCGACCCACTCCTCCTCCTTTACAGCTATCATCAACAGG
ATCTGTAGCAGCAGGTCCAGGAGGAGGAAGGGAACACGGAGCAGCAGTTC
AGTGTGTTCACATCGATGAAGATGAGATGGTCAAGGAGTTGACTTTAGGA
GGTCGGCCCCTCCCTACCAATGCTGCTGCTTGTATATATGCTGCTGCTCC
CCCTTCACGCCCTTTTCCCCCTCCACCACCACCACCACCCTCGTCCTCGC
CTCTCAGACAGCGACAACTTCAATGGCAGCAACTAAAACAGCAGCAGCAG
CGGTCGGGATCCACGCCGCACTCTCCCATTTTACTGTCTCCAGGGAAAGA
TGAAGAGGAGGGAAAGGGTGAAAAATGGAGGAGGGAGGAAGGGATTGAGG
TGGAAAACGATGACGATGACGAGACAAGAGCGACTGCCTCACCCGGGGAT
GGTGCTGCAGCAGCTAGCGCTCCAGCAATGCCGTGTCTCCCAACCTTGTC
AAAGAAAAGGGAGACTACCGACGTGTCCACCTATGCGAAAGATGAACATG
AGGAAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGCAGGACGT
CGTCAGTTACAGCATTTCCACCCTGTTGCTGCTGCCTCTCTTTCTCCTCC
CTCTCCCCCCCTTCAATCTCAGCTCCCCTCCCTCTATGGCTACCCTCCTA
CTCCCTTAATAAGCGCCCACAAATTTCCTTCCCAAGCCTTATCTTACATG
TCCGAGGATCTTTTAGCTGATGCCTGCTATCAGCACGAATGCAAGGACGA
GGAAGGGAGGGAAGGAGAGGATGAATCGCAGACCCACCGTCATCATGGTC
ATTGTTGGAGCAGCCCTGAGGAGGAATCGATGCCGATGCCACCACCACCA
CGCCTATCATCGCCTGCTCCTACTACTACAGCTGCCACTGCTACTTCTTC
TGCTGCTGCTCTTGATGCTGTTGCTGCTCTTGCTGCTATGCCACCCCCCT
TGCCCCGCGCTCCCTCCATCCATCAAGGGCGTTCTGACGAGTCCATTTCT
AGCTTACATATTCGACAGCGCTCCTCCCCCTCCCCTCTCTCCCCCACTTC
CTCCTCATCGAGTCAGAGCTCTGCAGAGACCTCCTCTCGCCTGTCCTCCC
CTCTCAATGTTGGAAGAAGAAGAGGAAAGGAGGGAGGAAGTGGAGGAAGA
ATCATCCCGGAGTCACAACAGCCATTTGTCTCCGGCAGCCAGAGCAGTCC
TGCAGGTCTGGTCATTCTGTCTACTCCACCCGATCAGCAGCAGCAGCAGC
AGCAGCAAGAACAGCAAAAGCAGAAGCATATAAAGAAGGTGGTTTATGAG
ACGCAAGAACCAGGAGCGCTGGGCTTCAGCTTGGGAGAAGGAGGAGACGA
AGAAGGAGGAGGATTTGAGGGAGGGGGGGGGGCCTCGTGA

protein sequence of NO06G01480.1

>NO06G01480.1-protein ID=NO06G01480.1-protein|Name=NO06G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=917bp
MNEAVCGAVVRAAAPPSPFPLPLESLALLDPAGQQAFIDKFAELVQCPMC
KRFLQDPVAVPCSHTFCRICIDDHLSDNSFCPECAIPAYRKDMRPNRAMN
CVLDSFKDIRRALEEQGLRRPPPPLVAHSSSASLARGGVLLPGSPSGRSR
GLGEGEGGKEGGRGRMLGEESATHETQDDPFPALLEEENGKEKKEKKVGG
DGGINENEEEKKSRGSSLGMNEGGKIVLEEGDDEKKKQEGGEKEVIIMGV
GSAVAHEGGREEGGEGEGTPLVDLTDTSPEKSHRPSSWPGVKQEGRGEGG
GGGGGTSGGGSFFSKIVDKAGQWLGRGRAKTSSSSNIYRHSGVETPKGSF
SASAAAATAASTSASSSFPDDDMAAATQTRITQYINPRQQLPLQQQDQHQ
RQKQLDRQQQQQNHKRKEWGRGGGQGERVGGGGCSSAWKHPRPTPPPLQL
SSTGSVAAGPGGGREHGAAVQCVHIDEDEMVKELTLGGRPLPTNAAACIY
AAAPPSRPFPPPPPPPPSSSPLRQRQLQWQQLKQQQQRSGSTPHSPILLS
PGKDEEEGKGEKWRREEGIEVENDDDDETRATASPGDGAAAASAPAMPCL
PTLSKKRETTDVSTYAKDEHEEAAAAAAAAAAAAAGRRQLQHFHPVAAAS
LSPPSPPLQSQLPSLYGYPPTPLISAHKFPSQALSYMSEDLLADACYQHE
CKDEEGREGEDESQTHRHHGHCWSSPEEESMPMPPPPRLSSPAPTTTAAT
ATSSAAALDAVAALAAMPPPLPRAPSIHQGRSDESISSLHIRQRSSPSPL
SPTSSSSSQSSAETSSRLSSPLNVGRRRGKEGGSGGRIIPESQQPFVSGS
QSSPAGLVILSTPPDQQQQQQQQEQQKQKHIKKVVYETQEPGALGFSLGE
GGDEEGGGFEGGGGAS*

Synonyms

Publications