NO06G00730, NO06G00730 (gene) Nannochloropsis oceanica

Overview
NameNO06G00730
Unique NameNO06G00730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr6:261274..261945 -

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Properties
Property NameValue
DescriptionRibosomal protein l12
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:261274..261945 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR036796Ribosomal_L11/L12_N_sf
IPR036769Ribosomal_L11_C_sf
IPR020783Ribosomal_L11_C
IPR020784Ribosomal_L11_N
IPR000911Ribosomal_L11/L12
Homology
BLAST of NO06G00730 vs. NCBI_GenBank
Match: EWM26134.1 (ribosomal protein l12 [Nannochloropsis gaditana])

HSP 1 Score: 308.5 bits (789), Expect = 1.200e-80
Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 0
Query:    1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167
            M PPPAA GEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTL+GTVKEILGTANSVGCTVQGEAPTEIQ+KIDSGDITIP+E
Sbjct:    1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_002182088.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46628.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 241.9 bits (616), Expect = 1.400e-60
Identity = 120/166 (72.29%), Postives = 143/166 (86.14%), Query Frame = 0
Query:    1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167
            M PPP  + ++K V++R VGGE+GSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH GNLT+D II IAR MR RSMAR L GTVKEILGTANS+GC+V GE+P +IQA ID G+I IPEE
Sbjct:    1 MGPPP--SDDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHDGNLTLDQIIDIARQMRERSMARKLKGTVKEILGTANSIGCSVNGESPRDIQASIDDGEIEIPEE 164          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_008898524.1 (hypothetical protein PPTG_06371 [Phytophthora parasitica INRA-310] >ETI31368.1 hypothetical protein F443_21642 [Phytophthora parasitica P1569] >ETK71747.1 hypothetical protein L915_21048 [Phytophthora parasitica] >ETL25185.1 hypothetical protein L916_20923 [Phytophthora parasitica] >ETL78397.1 hypothetical protein L917_20782 [Phytophthora parasitica] >ETM31679.1 hypothetical protein L914_20790 [Phytophthora parasitica] >ETN16169.1 hypothetical protein PPTG_06371 [Phytophthora parasitica INRA-310] >ETO60070.1 hypothetical protein F444_21681 [Phytophthora parasitica P1976] >ETP01191.1 hypothetical protein F441_21534 [Phytophthora parasitica CJ01A1] >ETP29326.1 hypothetical protein F442_21498 [Phytophthora parasitica P10297] >KUF88921.1 60S ribosomal protein L12 [Phytophthora nicotianae] >KUF98029.1 Asparagine synthetase domain-containing protein 1 [Phytophthora nicotianae] >POM65889.1 60S ribosomal protein L12 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 240.4 bits (612), Expect = 4.100e-60
Identity = 125/164 (76.22%), Postives = 140/164 (85.37%), Query Frame = 0
Query:    2 APPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPE 166
            APPP  AGE K VVLR VGGEV  AS LAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATV+L+PSASS++++ LKEPPRDRKK KNIKH GNL++D +IS+AR MR RSMARTLAGTVKEILGTA+S+GCTV GEAPTEIQ  I  G++ IPE
Sbjct:    3 APPP--AGEEKVVVLRTVGGEVAPASALAPKVGPLGLSPKKIGEDICKATKDWKGLNVTVKLTIVNRQATVTLIPSASSLLVKELKEPPRDRKKVKNIKHDGNLSLDQVISVARIMRERSMARTLAGTVKEILGTASSLGCTVNGEAPTEIQRLITEGELDIPE 164          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: GAX28764.1 (large subunit ribosomal protein L12e [Fistulifera solaris] >GAX18195.1 large subunit ribosomal protein L12e [Fistulifera solaris])

HSP 1 Score: 240.4 bits (612), Expect = 4.100e-60
Identity = 118/166 (71.08%), Postives = 144/166 (86.75%), Query Frame = 0
Query:    1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167
            M PPP  + ++K V++R VGGEVGSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH+GNLT+D +I IAR MR RSMAR L+GTVKEILGT NS+GCTV GE+P +IQA ID G++ IPE+
Sbjct:    1 MGPPP--SDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHNGNLTLDQVIDIARQMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEK 164          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: OWZ17167.1 (60S ribosomal protein L12 [Phytophthora megakarya])

HSP 1 Score: 240.4 bits (612), Expect = 4.100e-60
Identity = 125/164 (76.22%), Postives = 140/164 (85.37%), Query Frame = 0
Query:    2 APPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPE 166
            APPP  AGE K VVLR VGGEV  AS LAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATV+L+PSASS++++ LKEPPRDRKK KNIKH GNL++D +IS+AR MR RSMARTLAGTVKEILGTA+S+GCTV GEAPTEIQ  I  G++ IPE
Sbjct:    3 APPP--AGEEKVVVLRTVGGEVAPASALAPKVGPLGLSPKKIGEDICKATKDWKGLNVTVKLTIINRQATVTLIPSASSLLVKELKEPPRDRKKVKNIKHDGNLSLDQVISVARIMRERSMARTLAGTVKEILGTASSLGCTVNGEAPTEIQRLISEGELDIPE 164          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: CCI45703.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 240.0 bits (611), Expect = 5.400e-60
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query:    1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167
            MAPPP  AGE K V+LR VGGEV  ASTLAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATVSL+PSASS++++ LKEPPR+RKK KNIKH GNL++D II +AR MR RS+ARTL GTVKEILGTA+S+GCTV GEAPTEIQ  I  G++ IPE+
Sbjct:    1 MAPPP-PAGEEKIVILRTVGGEVAPASTLAPKVGPLGLSPKKIGEDICKATQDWKGLNVTVKLTIVNRQATVSLVPSASSLLVKELKEPPRNRKKVKNIKHDGNLSLDQIIDVARVMRERSIARTLTGTVKEILGTASSLGCTVNGEAPTEIQRMISEGELDIPEQ 165          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: AAX62480.1 (ribosomal protein L12 [Lysiphlebus testaceipes] >AAX62481.1 ribosomal protein L12 variant 1 [Lysiphlebus testaceipes])

HSP 1 Score: 238.4 bits (607), Expect = 1.600e-59
Identity = 117/164 (71.34%), Postives = 142/164 (86.59%), Query Frame = 0
Query:    3 PPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167
            PP     E+K V +R VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S++I+ALKEPPRDRKK+KNIKHSGN+T DD++SIARTMR RSM+R L+GTVKEILGT+ SVGCTV G AP +I   IDSG+I +PEE
Sbjct:    2 PPKFDPTEVKKVFMRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLVIKALKEPPRDRKKQKNIKHSGNITFDDVLSIARTMRERSMSRKLSGTVKEILGTSQSVGCTVDGRAPHDIIEDIDSGEIEVPEE 165          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_002902878.1 (60S ribosomal protein L12, putative [Phytophthora infestans T30-4] >EEY56048.1 60S ribosomal protein L12, putative [Phytophthora infestans T30-4])

HSP 1 Score: 238.0 bits (606), Expect = 2.100e-59
Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 0
Query:    2 APPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPE 166
            APPP  AGE K VVLR VGGEV  AS LAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATV+L+PSASS++++ LKEPPRDRKK KNIKH GNL++D +IS+AR MR RSMARTLAGTVKEILGTA S+GCTV GEAPTEIQ  I  G++ IP+
Sbjct:    3 APPP--AGEEKVVVLRTVGGEVAPASALAPKVGPLGLSPKKIGEDICKATKDWKGLNVTVKLTIVNRQATVTLIPSASSLLVKELKEPPRDRKKVKNIKHDGNLSLDQVISVARIMRERSMARTLAGTVKEILGTAASLGCTVNGEAPTEIQRLITEGELDIPD 164          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_011335603.1 (PREDICTED: 60S ribosomal protein L12 [Ooceraea biroi] >EZA56353.1 60S ribosomal protein L12 [Ooceraea biroi])

HSP 1 Score: 237.7 bits (605), Expect = 2.700e-59
Identity = 116/164 (70.73%), Postives = 143/164 (87.20%), Query Frame = 0
Query:    3 PPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167
            PP     EIK V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S+II+ALKEPPRDRK++KNIKHSGNL+ DDI+SIAR+MRPRSM+RTLAGTVKEILGT  SVGCT++G  P ++   I++G++ +PEE
Sbjct:    2 PPKFDPNEIKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLIIKALKEPPRDRKRQKNIKHSGNLSFDDIVSIARSMRPRSMSRTLAGTVKEILGTCQSVGCTIEGRPPHDLIDDINAGELEVPEE 165          
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_002287705.1 (RL12, ribosomal protein 11 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED95148.1 RL12, ribosomal protein 11 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 237.7 bits (605), Expect = 2.700e-59
Identity = 118/166 (71.08%), Postives = 143/166 (86.14%), Query Frame = 0
Query:    1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167
            M  PP  + ++K V++R VGGEVGSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PSASS++++AL EP RDRKK KN+ H+GN+T+D +I IAR MR RSMA+ LAGTVKEILGTANS+GCTV GE+P +IQA ID G++ IPEE
Sbjct:    1 MGGPP--SDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVVHNGNITLDQVIDIARQMRERSMAKKLAGTVKEILGTANSIGCTVNGESPRDIQAGIDDGEVEIPEE 164          
The following BLAST results are available for this feature:
BLAST of NO06G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26134.11.200e-8096.99ribosomal protein l12 [Nannochloropsis gaditana][more]
XP_002182088.11.400e-6072.29predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_008898524.14.100e-6076.22hypothetical protein PPTG_06371 [Phytophthora para... [more]
GAX28764.14.100e-6071.08large subunit ribosomal protein L12e [Fistulifera ... [more]
OWZ17167.14.100e-6076.2260S ribosomal protein L12 [Phytophthora megakarya][more]
CCI45703.15.400e-6074.70unnamed protein product [Albugo candida][more]
AAX62480.11.600e-5971.34ribosomal protein L12 [Lysiphlebus testaceipes] >A... [more]
XP_002902878.12.100e-5975.6160S ribosomal protein L12, putative [Phytophthora ... [more]
XP_011335603.12.700e-5970.73PREDICTED: 60S ribosomal protein L12 [Ooceraea bir... [more]
XP_002287705.12.700e-5971.08RL12, ribosomal protein 11 60S large ribosomal sub... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000378NSK000378Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00730.1NO06G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g51gene4412Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00730.1NO06G00730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00730 ID=NO06G00730|Name=NO06G00730|organism=Nannochloropsis oceanica|type=gene|length=672bp
ATGGCTCCTCCTCCCGCCGCTGCCGGCGAGATCAAGACTGgtaagtcatt
gagagagggaagacagaggtagaagtgtgggagatgggaggtggtccgac
gcgtgtgacgtgtgggcagtgtgccccgatgcccaacttacggcaaatac
atcgtgcatggaagaaatatggctgacctctgttccctgtccctcgttcc
ccactcgtcagTCGTGTTGCGCGCCGTCGGTGGTGAAGTGGGCTCGGCGT
CCACTCTGGCACCCAAAGTGGGACCTCTAGGTCTCTCCCCCAAGAAGGTG
GGCGAGGACATCCAGAAAGCGACTATGGACTGGAAGGGGCTTAAAGTGAC
AGTGAAGCTGACAATCCAGAACCGGCAAGCCACTGTCTCCTTGCTGCCCT
CAGCCTCCTCCATGATCATCCGGGCCCTCAAGGAGCCCCCCCGTGACCGC
AAAAAGGAGAAGAACATCAAGCACAGCGGCAACCTGACCATGGATGACAT
CATCAGTATTGCACGCACCATGCGTCCCCGCTCCATGGCTCGCACACTGG
CTGGCACCGTCAAGGAGATCCTGGGCACGGCCAACTCGGTAGGCTGCACT
GTGCAGGGTGAGGCGCCAACTGAGATTCAAGCCAAGATTGATTCAGGCGA
TATCACCATCCCTGAAGAGTAG
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protein sequence of NO06G00730.1

>NO06G00730.1-protein ID=NO06G00730.1-protein|Name=NO06G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKA
TMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIK
HSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPT
EIQAKIDSGDITIPEE*
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Synonyms
Publications