NO06G00270, NO06G00270 (gene) Nannochloropsis oceanica

Overview
NameNO06G00270
Unique NameNO06G00270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length633
Alignment locationchr6:117372..118004 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:117372..118004 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G00270 vs. NCBI_GenBank
Match: EWM26484.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19
Identity = 76/192 (39.58%), Postives = 101/192 (52.60%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 189
            MR ALSL+ LGVT   T   TA   L L SI+ VD +  NKD W +KG +NDP    + A G TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  I G+  +SD    C +  +   R T   C PG
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIK-TSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGS-VLSDTLTSCYDLARKSGRNTISHCEPG 190          
BLAST of NO06G00270 vs. NCBI_GenBank
Match: EWM26485.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19
Identity = 76/192 (39.58%), Postives = 101/192 (52.60%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 189
            MR ALSL+ LGVT   T   TA   L L SI+ VD +  NKD W +KG +NDP    + A G TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  I G+  +SD    C +  +   R T   C PG
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIK-TSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGS-VLSDTLTSCYDLARKSGRNTISHCEPG 190          
BLAST of NO06G00270 vs. NCBI_GenBank
Match: EWM27399.1 (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 4.500e-19
Identity = 74/192 (38.54%), Postives = 101/192 (52.60%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGA--DEISDINYKCTEKVGTRATKFLCTPG 189
            MR  LSL+ALG+TL  T   TA   L L SI+AVD +  NKD W +KG +NDP    + A G  GLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  ++ +   +   + Y    K G R T   C PG
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIK-TSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTVDESVLSDTLTLCYNLPRKNG-RNTISHCEPG 190          
BLAST of NO06G00270 vs. NCBI_GenBank
Match: EWM20775.1 (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 100.1 bits (248), Expect = 8.500e-18
Identity = 69/192 (35.94%), Postives = 100/192 (52.08%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALTAAETA-PTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 189
            MR A S +A+G+T   +   TA   L L SI+AVD + ANKD W +KG ++DP    +     TGL   L +G  D ++   F A DCR+  N +   CK+ GAR+S+K ++R PK    +    +   +   YYRV+G  R   F E+ + SPL A   + G D +SD    C +  ++  R T   C PG
Sbjct:    1 MRSAFSFLAVGITFGSSLVTTAGQDLNLKSIRAVDRSVANKDTWKMKGKIDDPSMTIVPEIAQTGLIVELQDGGSDPLNTVTFAASDCRVPTNGRRATCKIRGARVSIKSSRR-PKLKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSPLTAKLTVNG-DVLSDTLTSCYDLPRMNGRNTITHCEPG 190          
BLAST of NO06G00270 vs. NCBI_GenBank
Match: EWM27397.1 (hypothetical protein Naga_101181g1 [Nannochloropsis gaditana])

HSP 1 Score: 99.4 bits (246), Expect = 1.400e-17
Identity = 65/161 (40.37%), Postives = 88/161 (54.66%), Query Frame = 0
Query:    1 MRRALSLVALGVTLALT-AAETAPTLILTSIKAVDTTRANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGI 160
            MR  LSL+ALG+TL  T    T  +L L SI+AVD +  NKD W +KG +NDP    +   G  GLT  L +   D ++   F A DCR+  + K   CK+ GAR+ +K ++R   +    V   R  +T   YY V+G FRR  F EN + SPL AA  +
Sbjct:   69 MRSTLSLLALGITLGSTLVTTTGQSLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVPTIGQKGLTVELQDATTDLLNTVTFAARDCRVPAHGKRAACKIRGARVFIKTSRRPKINTPKTVHAKRYNST-GGYYSVTGTFRRLTFLENPVVSPLTAALTV 228          
BLAST of NO06G00270 vs. NCBI_GenBank
Match: EWM25644.1 (hypothetical protein Naga_100037g5 [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.000e-15
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 0
Query:   37 RANKDQWSVKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADE----ISDINYKCTE--KVGTRATKFLC 186
            +A +D+W++ G+ NDP   A++  G  G+ A+L +  +  +S T F    C+ LNN +GV CK TGARL LK+T    KD  +     RN ++  ++Y+V GVFRR  F +  + +PL   F ++  +      +    +CTE  K G + TK  C
Sbjct:  163 KAKRDRWTITGFFNDPAETAVVNIGQYGIIAVLQDAAKKALSSTFFTPPQCKALNNIRGVTCKTTGARLRLKKT----KDPSV-----RNKSSEGAFYKVKGVFRRLTFLQQPVQTPLTTIFAVQFPNTTTVFTTSATEQCTEKGKTGGKKTKIDC 309          
BLAST of NO06G00270 vs. NCBI_GenBank
Match: XP_005854458.1 (glycosyl hydrolase [Nannochloropsis gaditana CCMP526] >EKU21904.1 glycosyl hydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 50/147 (34.01%), Postives = 74/147 (50.34%), Query Frame = 0
Query:   45 VKGYLNDPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKVTGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEF-ENTLSSPLIAAFGIEGADEISDINYKCTE--KVGTRATKFLCTPG 189
            +KG ++DP    + A   TGLT  L +   D ++   F A DCR+  + +   CK+ GAR+S+K T R PK    +    ++  +   YY V+G FR   F EN + SPL AA  + G+  +SD    C +  +   R T   C PG
Sbjct:    1 MKGSISDPSLTIVSAIRQTGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIK-TSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLAAALRVNGS-VLSDTLTSCYDLARKSGRNTITHCEPG 145          
The following BLAST results are available for this feature:
BLAST of NO06G00270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
EWM26484.11.200e-1939.58Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM26485.11.200e-1939.58Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM27399.14.500e-1938.54hypothetical protein Naga_100212g1, partial [Nanno... [more]
EWM20775.18.500e-1835.94hypothetical protein Naga_100549g2 [Nannochloropsi... [more]
EWM27397.11.400e-1740.37hypothetical protein Naga_101181g1 [Nannochloropsi... [more]
EWM25644.11.000e-1534.62hypothetical protein Naga_100037g5 [Nannochloropsi... [more]
XP_005854458.11.100e-934.01glycosyl hydrolase [Nannochloropsis gaditana CCMP5... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00270.1NO06G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00270.1NO06G00270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00270 ID=NO06G00270|Name=NO06G00270|organism=Nannochloropsis oceanica|type=gene|length=633bp
ATGCGTCGCGCTCTTTCTCTGGTTGCCCTTGGCGTCACACTCGCCCTCAC
GGCGGCTGAGACTGCGCCGACGTTGATTCTTACCTCCATCAAGGCAGTTG
ACACGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACCTCAAC
GACCCTGATGGGAATGCTATCCTGGCCTTTGGTGACACTGGCTTGACCGC
GCTGCTTGCAAACGGGAACGAAGACACAGTGAGTGAAACGGACTTTGACG
CGGATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTA
ACGGGCGCCCGCCTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGC
CATGCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACT
ACAGGGTTTCGGGTGTTTTCCGCCGTCAGGAGTTCGAAAACACTCTTTCG
TCGCCTCTGATTGCTGCCTTCGGCATTGAAGGCGCAGATGAGATCTCTGA
TATCAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTTC
TCTGCACGCCTGGCACTGCCCCGCCTACTGCTGCCCCTACTGCTACCCCT
ACTGCTGCCCCTACTGCTGCCCCTTCTGTCTAG
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protein sequence of NO06G00270.1

>NO06G00270.1-protein ID=NO06G00270.1-protein|Name=NO06G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRRALSLVALGVTLALTAAETAPTLILTSIKAVDTTRANKDQWSVKGYLN
DPDGNAILAFGDTGLTALLANGNEDTVSETDFDADDCRLLNNDKGVICKV
TGARLSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVFRRQEFENTLS
SPLIAAFGIEGADEISDINYKCTEKVGTRATKFLCTPGTAPPTAAPTATP
TAAPTAAPSV*
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Synonyms
Publications