NO05G04250, NO05G04250 (gene) Nannochloropsis oceanica

Overview
NameNO05G04250
Unique NameNO05G04250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2285
Alignment locationchr5:1094134..1096418 -

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome c oxidase assembly protein COX19
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1094134..1096418 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_024586843.1 (related to cox19-cytochrome c oxidase assembly protein [Plasmopara halstedii] >CEG50474.1 related to cox19-cytochrome c oxidase assembly protein [Plasmopara halstedii])

HSP 1 Score: 73.6 bits (179), Expect = 4.700e-10
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR--KGYF 115
            +C+    EFL C+  +   +  CK LS +YLQCRM+K LMQ E+L KLGF E  EG ++  +DKT      + ++E EGFV G G+K  R  KG F
Sbjct:   26 ECKPAMKEFLACMRKHGNSHIDCKQLSASYLQCRMDKGLMQSEELEKLGFHE--EGMKKTWKDKTN-----EGRKEGEGFVAGLGIKKGRYEKGGF 114          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: OWZ14744.1 (Cytochrome c oxidase [Phytophthora megakarya])

HSP 1 Score: 73.2 bits (178), Expect = 6.100e-10
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111
            +C+    +FL C+  +   +  CK LS AYLQCRM+K LMQ E+L KLGF E  EG +     KT  EK  + ++E EGFV G GVK SR
Sbjct:   26 ECKPAMKQFLVCMREHGNSHINCKKLSAAYLQCRMDKGLMQPEELEKLGFHE--EGMK-----KTWTEKTNEGRKEGEGFVAGLGVKKSR 108          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_008910905.1 (hypothetical protein PPTG_15900 [Phytophthora parasitica INRA-310] >XP_008910906.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI39224.1 hypothetical protein F443_15174 [Phytophthora parasitica P1569] >ETI39225.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK79431.1 hypothetical protein L915_14715 [Phytophthora parasitica] >ETK79432.1 hypothetical protein, variant [Phytophthora parasitica] >ETL32843.1 hypothetical protein L916_14629 [Phytophthora parasitica] >ETL32844.1 hypothetical protein, variant [Phytophthora parasitica] >ETL86103.1 hypothetical protein L917_14432 [Phytophthora parasitica] >ETL86104.1 hypothetical protein, variant [Phytophthora parasitica] >ETM39252.1 hypothetical protein L914_14573 [Phytophthora parasitica] >ETM39253.1 hypothetical protein, variant [Phytophthora parasitica] >ETN03678.1 hypothetical protein PPTG_15900 [Phytophthora parasitica INRA-310] >ETN03679.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO67965.1 hypothetical protein F444_15152 [Phytophthora parasitica P1976] >ETO67966.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP09136.1 hypothetical protein F441_14983 [Phytophthora parasitica CJ01A1] >ETP09137.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP37168.1 hypothetical protein F442_15007 [Phytophthora parasitica P10297] >ETP37169.1 hypothetical protein, variant [Phytophthora parasitica P10297] >KUF77336.1 Cytochrome c oxidase assembly protein COX19 [Phytophthora nicotianae])

HSP 1 Score: 72.8 bits (177), Expect = 7.900e-10
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111
            +C+    EFL C+  +   +  CK LS AYLQCRM+K LM+ E+L KLGF E  EG +     KT  E+  + ++E EGFV G G+K SR
Sbjct:   26 ECKPAMKEFLACMREHSNSHIDCKKLSAAYLQCRMDKGLMKPEELEKLGFHE--EGMK-----KTWTEETNEGRKEGEGFVAGLGIKKSR 108          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: GAY04697.1 (Hypothetical protein PINS_012517 [Pythium insidiosum])

HSP 1 Score: 72.0 bits (175), Expect = 1.400e-9
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 0
Query:   19 NSQCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111
            + +C+    EFL CI  +   +  CK LSKAYL CR+++ LMQ+E+L KLGF EK  G +     KTR    Y+ ++E EGFV G GVK +R
Sbjct:  101 DGECKPKMKEFLACIREHNASHIDCKHLSKAYLACRIDRGLMQEEELDKLGFHEK--GMQ-----KTRAPS-YEGRKEEEGFVAGLGVKKAR 184          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_008613345.1 (hypothetical protein SDRG_09206 [Saprolegnia diclina VS20] >XP_012200294.1 hypothetical protein SPRG_06185 [Saprolegnia parasitica CBS 223.65] >EQC33222.1 hypothetical protein SDRG_09206 [Saprolegnia diclina VS20] >KDO29130.1 hypothetical protein SPRG_06185 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 71.2 bits (173), Expect = 2.300e-9
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVK 108
            +C+     +L C+     ++  CK LS+ YLQCRM+K LMQ E+L KLGF+E        K  KT   + ++ KRE EGFV GTG+K
Sbjct:   26 ECKEQIKVYLACLREKSNNHIDCKHLSQQYLQCRMDKGLMQPENLEKLGFDE--------KSYKTGRARSFEGKREKEGFVAGTGIK 104          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_002902282.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY56954.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 69.7 bits (169), Expect = 6.700e-9
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111
            +C+    EFL C+  ++  +  CK LS AYLQCRM+K LM+ E+L KLGF E  EG ++   ++T      + ++E EGFV G G+K SR
Sbjct:   26 ECKPAMKEFLVCMREHRNSHIDCKTLSAAYLQCRMDKGLMKPEELEKLGFHE--EGMKKMWTEQTN-----EGRKEGEGFVAGLGIKKSR 108          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: GAX94530.1 (Hypothetical protein PINS_002421 [Pythium insidiosum])

HSP 1 Score: 69.7 bits (169), Expect = 6.700e-9
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 0
Query:   19 NSQCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111
            + +C+    EFL CI  +   +  CK LSKAYL CR+++ LMQ+E+L  LGF EK  G +     KTR    Y+ ++E EGFV G GVK +R
Sbjct:   24 DGECKPKMKEFLACIREHNASHIDCKHLSKAYLACRIDRGLMQEEELDXLGFHEK--GMQ-----KTRAPS-YEGRKEEEGFVAGLGVKKAR 107          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: OQR85957.1 (hypothetical protein ACHHYP_11141 [Achlya hypogyna])

HSP 1 Score: 68.9 bits (167), Expect = 1.100e-8
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVK 108
            +C+     +L C+     ++  CK LS+ YLQCRM+K LMQ E+L KLGF+EK      A+         ++ KRE EGFV GTG+K
Sbjct:   26 ECKEQIKVYLACLREKHNNHIDCKHLSQQYLQCRMDKGLMQPENLEKLGFDEKSYSTGRARS--------FEGKREKEGFVAGTGIK 104          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: OQS03852.1 (hypothetical protein THRCLA_21043 [Thraustotheca clavata])

HSP 1 Score: 66.6 bits (161), Expect = 5.700e-8
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGS 110
            +C+     +L C+   K +   CK L++ YL+CRMEK LMQ+E+L KLGF+EK      A           + KRE EGFV GTG+K +
Sbjct:   26 ECKEPIKVYLECLRQKKNNQIDCKHLAQRYLECRMEKGLMQRENLDKLGFDEKSYNTGRATSS--------EGKREKEGFVAGTGIKAA 106          
BLAST of NO05G04250 vs. NCBI_GenBank
Match: CBJ32343.1 (COX19 homolog, cytochrome c oxidase assembly protein [Ectocarpus siliculosus])

HSP 1 Score: 66.2 bits (160), Expect = 7.400e-8
Identity = 37/95 (38.95%), Postives = 52/95 (54.74%), Query Frame = 0
Query:   21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSRKGYFS 116
            +C+     FL C++ +  D+  CK LSK YL CRM++NLM +E+  KLGF       EE  E   R     +  +E EGFVGGT ++    G+ S
Sbjct:   25 ECKPHMKAFLACLKKHDSDHLPCKSLSKLYLACRMDRNLMAREEFEKLGF-----STEEEYERIRRQAPVKEGTKEGEGFVGGTHIRQRGGGWLS 114          
The following BLAST results are available for this feature:
BLAST of NO05G04250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
XP_024586843.14.700e-1044.79related to cox19-cytochrome c oxidase assembly pro... [more]
OWZ14744.16.100e-1047.78Cytochrome c oxidase [Phytophthora megakarya][more]
XP_008910905.17.900e-1045.56hypothetical protein PPTG_15900 [Phytophthora para... [more]
GAY04697.11.400e-945.65Hypothetical protein PINS_012517 [Pythium insidios... [more]
XP_008613345.12.300e-943.68hypothetical protein SDRG_09206 [Saprolegnia dicli... [more]
XP_002902282.16.700e-943.33conserved hypothetical protein [Phytophthora infes... [more]
GAX94530.16.700e-944.57Hypothetical protein PINS_002421 [Pythium insidios... [more]
OQR85957.11.100e-842.53hypothetical protein ACHHYP_11141 [Achlya hypogyna... [more]
OQS03852.15.700e-841.57hypothetical protein THRCLA_21043 [Thraustotheca c... [more]
CBJ32343.17.400e-838.95COX19 homolog, cytochrome c oxidase assembly prote... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585041gene_3238Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04250.3NO05G04250.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G04250.2NO05G04250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G04250.1NO05G04250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04250.3NO05G04250.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G04250.2NO05G04250.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G04250.1NO05G04250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04250 ID=NO05G04250|Name=NO05G04250|organism=Nannochloropsis oceanica|type=gene|length=2285bp
AGGAGGAGGAGGAGGAGGAGGAGGAAGGAAGGAAGAAGAAAGGCAACACC
CGCTTCCGAATCACGCCCTTATACTGCGTGCGGGCCGTGAGCTCTTGCCC
AAGGTAGCAGCCTTTGTGAAAATTAATGGCATGAGTTAAATCGAGGTTAC
ATTCCGAAGGCAACCGTTCAACCAAGTCTGGCCCTTCCCCAACCCCATGC
AAAAAACGCAGTGCCTCATAAACTTCGCGTGGCTGCTGCTGGTGCTCCTG
CTGTTGCTGCTGCGAGCAAAAAAAGGGAAAGGCAGGGGAGGGTGTAACGA
TTGCACGAATGCCCAAAGGATGTTGTCCCGGCAAGGCAATCCGAGGGTCG
GGTCCGAGCCCCAGGACCTCTTCTCCTCGTCCTGTCCAATGCTTCTTCAC
CACATCTAGATCCACGAGTACCTCGTCCGGCAAGCCCAGCACCACGCACA
CCCTCGCCGTGGCCGTCAGATCAGTTATCTGCACTTTGGCACGAAGTTTG
AACAGGCGCAAATGACGGAGGAGTCCTTCTTTAACCTCCACAGGAAGGTC
TAGGAAGAATTTGTCAGGGCCACCATGCGGCGCTTCCTTGGCGTCGGTCG
CAATGGTTATGACACTCTCCGTAATCACCCGTCCTTTATTCGTCAAAAAT
GCCGCTGCCAACGATGCTTTTGCTTCGGTCAAATGGACAATGTCGTTCGT
GATTAGACCTTGCACAAGCTTGGGAGCATCGGGCCCTGCCAGTTGGAGGA
TGCACCGCTTGCCATTGCTCTCCCCGCGAGTCAGGTCCACTTCCCAGATG
CCGCCTGATCTGTTGGTTGCCATGACATGAGGGTCCCATCTTGTTGGGAT
TGTGCTGCTGCTGCTGAGCCGTCTTGGTGTTTTAGGTGCCTACGGAGGTG
TTAAGGGGATAAATTACAAGATGAAGATGATGGCTCGTGGGCAGAGGCGG
GGCAGAGGGTAGTAGGGAGTGTTTTACTTTCGAGGAGCAGGGGCTTGTTC
GAAGGAGAAACCATACTATCAGGACAAGCATTTTAGACTGAAGTGTGTAA
GACCTGGACGGGACGACGACGGAGCGACGGGTTCTTTCAAGGTGAATGAA
AGTGCCACGTACCCGTAAAATTGAAGCCGCTGTGGCGGACGCACTGGCAC
ACTGCAGCCAGGACGCAGCTACTCTCCGTCTTGTCGTAGAGGTGGAAGAA
TGCATGGGCTGTGTCGTGGTATTTGATGGGGTGTATATGTAAGGGGCGTG
GGTATTTTTAGGCAGCATGTAATGAGCTTCCAAGGCACATATCCTTGCTT
CATCAGCGAGTACCCGCCTCGTCCTCTTAGCAAGAGGCTCTTGCTTGTGA
TGCCACATATTCTCATTCCCAACTACACCCGGCACCACCACAACTATAGG
CTTTGATTCGACATTTCGCATGAATCCATTTGGCGGCGCAAGTATCCAAG
CGAAGCCACCAGAGAAGGGGAGCTTTCCGCTGGACCGGGCAGGCCAGGTA
TATGAGGCGAGGGGAAGGAGTTGAGGGAAGGGTACAAAAAAAACGACGCC
TTGGAGGGCCTGGCGAGAGTGACAGAATCGCAGATTAAAAAGGACGTAGC
ACGTGTGACCAGCTTTCTTGCGTATGTCTGTGCCAGCATTCAAGTCCAAA
CGACTCATCATACCGCTCCTACCTTTAAACTCGCAGTGCCGAGCCGTGGC
TCACGAATTCCTGGGGTGCATCGAGAGCAACAAGCGGGATTATTCGGCCT
GTAAAGATTTATCAAAAGCGTATTTGCAGTGTCGAATGGAAAAGgttagt
cagtgtgtaaggaaggggagtggtgcaggccgaactgtgtatgtgtgggg
tgtgactattttagaatatctgacaaacgccaaagtgacggacaggtgca
ctaattcacggtctccctgcaacactttaattatgatagAATCTGATGCA
AAAGGAAGACTTGAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAG
AGGAGGCCAAGGAGGACAAGACCAGgtacgtaggaaatgaattagataag
gcatttcagaaaaggaaaatgctaattccaaccccctcacttgtcgtttt
ttgaacagAGATGAGAAATTTTACGATCGGAAGCGAGAAGCGGAGGGCTT
TGTGGGTGGCACCGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTCTTGAG
CGAGGTGTGTACAAAGAGCGTGTAGGCGGATAAATTGTATTACAAACCAG
AAAGAAAATCAAAGCATATGGCATTTCAACAGAAG
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protein sequence of NO05G04250.3

>NO05G04250.3-protein ID=NO05G04250.3-protein|Name=NO05G04250.3|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSVPAFKSKRLIIPLLPLNSQCRAVAHEFLGCIESNKRDYSACKDLSKAY
LQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRYVGNELDKAFQKRK
MLIPTPSLVVF*
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protein sequence of NO05G04250.2

>NO05G04250.2-protein ID=NO05G04250.2-protein|Name=NO05G04250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MSVPAFKSKRLIIPLLPLNSQCRAVAHEFLGCIESNKRDYSACKDLSKAY
LQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGF
VGGTGVKGSRKGYFS*
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protein sequence of NO05G04250.1

>NO05G04250.1-protein ID=NO05G04250.1-protein|Name=NO05G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MNPFGGASIQAKPPEKGSFPLDRAGQCRAVAHEFLGCIESNKRDYSACKD
LSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKR
EAEGFVGGTGVKGSRKGYFS*
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Synonyms
Publications