NO05G04250, NO05G04250 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_024586843.1 (related to cox19-cytochrome c oxidase assembly protein [Plasmopara halstedii] >CEG50474.1 related to cox19-cytochrome c oxidase assembly protein [Plasmopara halstedii]) HSP 1 Score: 73.6 bits (179), Expect = 4.700e-10 Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR--KGYF 115 +C+ EFL C+ + + CK LS +YLQCRM+K LMQ E+L KLGF E EG ++ +DKT + ++E EGFV G G+K R KG F Sbjct: 26 ECKPAMKEFLACMRKHGNSHIDCKQLSASYLQCRMDKGLMQSEELEKLGFHE--EGMKKTWKDKTN-----EGRKEGEGFVAGLGIKKGRYEKGGF 114
BLAST of NO05G04250 vs. NCBI_GenBank
Match: OWZ14744.1 (Cytochrome c oxidase [Phytophthora megakarya]) HSP 1 Score: 73.2 bits (178), Expect = 6.100e-10 Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111 +C+ +FL C+ + + CK LS AYLQCRM+K LMQ E+L KLGF E EG + KT EK + ++E EGFV G GVK SR Sbjct: 26 ECKPAMKQFLVCMREHGNSHINCKKLSAAYLQCRMDKGLMQPEELEKLGFHE--EGMK-----KTWTEKTNEGRKEGEGFVAGLGVKKSR 108
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_008910905.1 (hypothetical protein PPTG_15900 [Phytophthora parasitica INRA-310] >XP_008910906.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI39224.1 hypothetical protein F443_15174 [Phytophthora parasitica P1569] >ETI39225.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK79431.1 hypothetical protein L915_14715 [Phytophthora parasitica] >ETK79432.1 hypothetical protein, variant [Phytophthora parasitica] >ETL32843.1 hypothetical protein L916_14629 [Phytophthora parasitica] >ETL32844.1 hypothetical protein, variant [Phytophthora parasitica] >ETL86103.1 hypothetical protein L917_14432 [Phytophthora parasitica] >ETL86104.1 hypothetical protein, variant [Phytophthora parasitica] >ETM39252.1 hypothetical protein L914_14573 [Phytophthora parasitica] >ETM39253.1 hypothetical protein, variant [Phytophthora parasitica] >ETN03678.1 hypothetical protein PPTG_15900 [Phytophthora parasitica INRA-310] >ETN03679.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO67965.1 hypothetical protein F444_15152 [Phytophthora parasitica P1976] >ETO67966.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP09136.1 hypothetical protein F441_14983 [Phytophthora parasitica CJ01A1] >ETP09137.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP37168.1 hypothetical protein F442_15007 [Phytophthora parasitica P10297] >ETP37169.1 hypothetical protein, variant [Phytophthora parasitica P10297] >KUF77336.1 Cytochrome c oxidase assembly protein COX19 [Phytophthora nicotianae]) HSP 1 Score: 72.8 bits (177), Expect = 7.900e-10 Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111 +C+ EFL C+ + + CK LS AYLQCRM+K LM+ E+L KLGF E EG + KT E+ + ++E EGFV G G+K SR Sbjct: 26 ECKPAMKEFLACMREHSNSHIDCKKLSAAYLQCRMDKGLMKPEELEKLGFHE--EGMK-----KTWTEETNEGRKEGEGFVAGLGIKKSR 108
BLAST of NO05G04250 vs. NCBI_GenBank
Match: GAY04697.1 (Hypothetical protein PINS_012517 [Pythium insidiosum]) HSP 1 Score: 72.0 bits (175), Expect = 1.400e-9 Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 0 Query: 19 NSQCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111 + +C+ EFL CI + + CK LSKAYL CR+++ LMQ+E+L KLGF EK G + KTR Y+ ++E EGFV G GVK +R Sbjct: 101 DGECKPKMKEFLACIREHNASHIDCKHLSKAYLACRIDRGLMQEEELDKLGFHEK--GMQ-----KTRAPS-YEGRKEEEGFVAGLGVKKAR 184
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_008613345.1 (hypothetical protein SDRG_09206 [Saprolegnia diclina VS20] >XP_012200294.1 hypothetical protein SPRG_06185 [Saprolegnia parasitica CBS 223.65] >EQC33222.1 hypothetical protein SDRG_09206 [Saprolegnia diclina VS20] >KDO29130.1 hypothetical protein SPRG_06185 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 71.2 bits (173), Expect = 2.300e-9 Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVK 108 +C+ +L C+ ++ CK LS+ YLQCRM+K LMQ E+L KLGF+E K KT + ++ KRE EGFV GTG+K Sbjct: 26 ECKEQIKVYLACLREKSNNHIDCKHLSQQYLQCRMDKGLMQPENLEKLGFDE--------KSYKTGRARSFEGKREKEGFVAGTGIK 104
BLAST of NO05G04250 vs. NCBI_GenBank
Match: XP_002902282.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY56954.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 69.7 bits (169), Expect = 6.700e-9 Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111 +C+ EFL C+ ++ + CK LS AYLQCRM+K LM+ E+L KLGF E EG ++ ++T + ++E EGFV G G+K SR Sbjct: 26 ECKPAMKEFLVCMREHRNSHIDCKTLSAAYLQCRMDKGLMKPEELEKLGFHE--EGMKKMWTEQTN-----EGRKEGEGFVAGLGIKKSR 108
BLAST of NO05G04250 vs. NCBI_GenBank
Match: GAX94530.1 (Hypothetical protein PINS_002421 [Pythium insidiosum]) HSP 1 Score: 69.7 bits (169), Expect = 6.700e-9 Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 0 Query: 19 NSQCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSR 111 + +C+ EFL CI + + CK LSKAYL CR+++ LMQ+E+L LGF EK G + KTR Y+ ++E EGFV G GVK +R Sbjct: 24 DGECKPKMKEFLACIREHNASHIDCKHLSKAYLACRIDRGLMQEEELDXLGFHEK--GMQ-----KTRAPS-YEGRKEEEGFVAGLGVKKAR 107
BLAST of NO05G04250 vs. NCBI_GenBank
Match: OQR85957.1 (hypothetical protein ACHHYP_11141 [Achlya hypogyna]) HSP 1 Score: 68.9 bits (167), Expect = 1.100e-8 Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVK 108 +C+ +L C+ ++ CK LS+ YLQCRM+K LMQ E+L KLGF+EK A+ ++ KRE EGFV GTG+K Sbjct: 26 ECKEQIKVYLACLREKHNNHIDCKHLSQQYLQCRMDKGLMQPENLEKLGFDEKSYSTGRARS--------FEGKREKEGFVAGTGIK 104
BLAST of NO05G04250 vs. NCBI_GenBank
Match: OQS03852.1 (hypothetical protein THRCLA_21043 [Thraustotheca clavata]) HSP 1 Score: 66.6 bits (161), Expect = 5.700e-8 Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGS 110 +C+ +L C+ K + CK L++ YL+CRMEK LMQ+E+L KLGF+EK A + KRE EGFV GTG+K + Sbjct: 26 ECKEPIKVYLECLRQKKNNQIDCKHLAQRYLECRMEKGLMQRENLDKLGFDEKSYNTGRATSS--------EGKREKEGFVAGTGIKAA 106
BLAST of NO05G04250 vs. NCBI_GenBank
Match: CBJ32343.1 (COX19 homolog, cytochrome c oxidase assembly protein [Ectocarpus siliculosus]) HSP 1 Score: 66.2 bits (160), Expect = 7.400e-8 Identity = 37/95 (38.95%), Postives = 52/95 (54.74%), Query Frame = 0 Query: 21 QCRAVAHEFLGCIESNKRDYSACKDLSKAYLQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGFVGGTGVKGSRKGYFS 116 +C+ FL C++ + D+ CK LSK YL CRM++NLM +E+ KLGF EE E R + +E EGFVGGT ++ G+ S Sbjct: 25 ECKPHMKAFLACLKKHDSDHLPCKSLSKLYLACRMDRNLMAREEFEKLGF-----STEEEYERIRRQAPVKEGTKEGEGFVGGTHIRQRGGGWLS 114 The following BLAST results are available for this feature:
BLAST of NO05G04250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 15
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04250 ID=NO05G04250|Name=NO05G04250|organism=Nannochloropsis oceanica|type=gene|length=2285bpback to top protein sequence of NO05G04250.3 >NO05G04250.3-protein ID=NO05G04250.3-protein|Name=NO05G04250.3|organism=Nannochloropsis oceanica|type=polypeptide|length=112bpback to top protein sequence of NO05G04250.2 >NO05G04250.2-protein ID=NO05G04250.2-protein|Name=NO05G04250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=116bpback to top protein sequence of NO05G04250.1 >NO05G04250.1-protein ID=NO05G04250.1-protein|Name=NO05G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bpback to top Synonyms
Publications
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