NO05G04180, NO05G04180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_008621624.1 (hypothetical protein SDRG_17165 [Saprolegnia diclina VS20] >EQC24947.1 hypothetical protein SDRG_17165 [Saprolegnia diclina VS20]) HSP 1 Score: 101.3 bits (251), Expect = 3.100e-18 Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 69 RAPSKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 +APSK E LS KL A +WV G+ + +Y D V L D R++R YF+I ++C G+N CI AYL ++LP+++ VDLEW++YCPRMIP AT +V A Sbjct: 277 KAPSKA------EWLSTKLHALLWVAGACLLAYYLDVVRVALRDPRVHRLYFNIGVVCAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATVVGLVGA 372
BLAST of NO05G04180 vs. NCBI_GenBank
Match: CBN79064.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 98.6 bits (244), Expect = 2.000e-17 Identity = 45/103 (43.69%), Postives = 70/103 (67.96%), Query Frame = 0 Query: 68 ERAPSKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 E SKR+R+++ +R+S KL A WVV +A+++ TDFV L+ DER+ R +F+I ++C +N I AYL V+LP ++G+ + W +Y PR IP AT ++CA Sbjct: 100 EAEQSKRRRSQLADRISNKLHAFFWVVVGVAVVYRTDFVRVLVEDERVDRLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICA 202
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_024581901.1 (hypothetical protein PHALS_01822 [Plasmopara halstedii] >CEG45532.1 hypothetical protein PHALS_01822 [Plasmopara halstedii]) HSP 1 Score: 98.2 bits (243), Expect = 2.600e-17 Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 0 Query: 73 KRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 + Q+A +W S +L A +WV + + + TDF + D R+ R +F +A+IC GIN+CI YL +YLP+IK ++LEW++YCPR+IP+AT V+ F Sbjct: 38 RSQQAVLW---STRLHALLWVAAAGLVAYGTDFFSVIFTDPRVIREFFQVALICTGINICITVYLALYLPYIKRIELEWSVYCPRVIPSATIVGVIATF 133
BLAST of NO05G04180 vs. NCBI_GenBank
Match: OQS04007.1 (transmembrane protein [Thraustotheca clavata]) HSP 1 Score: 98.2 bits (243), Expect = 2.600e-17 Identity = 40/90 (44.44%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 81 ERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 E +S KL A +W+ ++A+ + D ++ +D R++R YF+I ++C G+N CI YL V+LP++K +DLEW++YCPRMIP AT ++CA Sbjct: 40 EYVSTKLHAALWIGSAVALAYCLDVLNVAFHDPRVHRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCA 129
BLAST of NO05G04180 vs. NCBI_GenBank
Match: CCA23966.1 (transmembrane protein putative [Albugo laibachii Nc14]) HSP 1 Score: 96.3 bits (238), Expect = 1.000e-16 Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 0 Query: 72 SKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 S+ QRAE++ S KL A +WVV ++ HY DFVH + D R+ +F++A+I GI CI YL ++LP++K + LEW++YCPRMIP AT +F Sbjct: 66 SRSQRAELY---STKLHALLWVVTALIAAHYLDFVHVICYDPRVRTAFFYVAVILSGIYACITCYLAIWLPYVKNIRLEWSVYCPRMIPTATLVGFSASF 162
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_008621625.1 (hypothetical protein SDRG_17166 [Saprolegnia diclina VS20] >EQC24948.1 hypothetical protein SDRG_17166 [Saprolegnia diclina VS20]) HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16 Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0 Query: 69 RAPSKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 +APSK E LS KL A +WV G+ + +Y D V L D R++R YF+I + G+N CI AYL ++LP+++ VDLEW++YCPRMIP AT +V A Sbjct: 39 KAPSKA------EWLSTKLHALLWVAGACLLAYYLDVVRVALRDPRVHRLYFNIGVASAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATVVGLVGA 134
BLAST of NO05G04180 vs. NCBI_GenBank
Match: OQR97437.1 (transmembrane protein [Achlya hypogyna]) HSP 1 Score: 95.9 bits (237), Expect = 1.300e-16 Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 0 Query: 81 ERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 E LS KL A +WVV + + ++ D + D R++R F++ ++C GIN CI AYL ++LP++K +DLEW++YCPRMIP AT + CA Sbjct: 47 EWLSTKLHAALWVVCAGLVAYFLDVFNVAFGDPRVHRLSFNVGLVCFGINCCITAYLAIWLPYVKKIDLEWSVYCPRMIPTATVAGLGCA 136
BLAST of NO05G04180 vs. NCBI_GenBank
Match: CCI41347.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 91.3 bits (225), Expect = 3.200e-15 Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 0 Query: 67 RERAPSKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 + A S+ QRAE++ S KL A +W+V ++ Y D VH + D R+ G+FH+A+ G+ CI YL ++LP+++ + LEW++YCPRMIP AT +F Sbjct: 61 KAHARSRSQRAELY---STKLHALLWIVAAIIAASYLDIVHVIFYDTRVRTGFFHVAVFLSGLYACITCYLAIWLPYVQKIRLEWSVYCPRMIPTATMAGFSASF 162
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_008913913.1 (hypothetical protein PPTG_17711 [Phytophthora parasitica INRA-310] >ETN00862.1 hypothetical protein PPTG_17711 [Phytophthora parasitica INRA-310]) HSP 1 Score: 80.9 bits (198), Expect = 4.400e-12 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0 Query: 118 GYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 G+F +A++C GIN+CI AYL VYLP+IK + LEW++YCPRMIP AT VV AF Sbjct: 15 GFFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAF 68
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_002289896.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93433.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 73.6 bits (179), Expect = 6.900e-10 Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 0 Query: 81 ERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLE-------------WAIYCPRMIPAATATAVVCAF 172 ER+S KL A WVV + I YT H L DERI R FH +++ +N+ + YL+VYLP+IK L W YCP +IP TA V+ +F Sbjct: 47 ERISDKLHALAWVVTAYFIASYTRLFHTLFTDERILRPIFHASLVLFAVNVVLTLYLIVYLPYIKFPKLSLSNTKLSASSSVFWDAYCPNVIPTMTAGGVIGSF 150 The following BLAST results are available for this feature:
BLAST of NO05G04180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04180 ID=NO05G04180|Name=NO05G04180|organism=Nannochloropsis oceanica|type=gene|length=5211bpback to top protein sequence of NO05G04180.2 >NO05G04180.2-protein ID=NO05G04180.2-protein|Name=NO05G04180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=173bpback to top protein sequence of NO05G04180.1 >NO05G04180.1-protein ID=NO05G04180.1-protein|Name=NO05G04180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bpback to top Synonyms
Publications
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