NO05G02670, NO05G02670 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02670
Unique Name	NO05G02670
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3780
Alignment location	chr5:707204..710983 -

Link to JBrowse

Properties


Property Name	Value
Description	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:707204..710983 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000338	protein deneddylation
GO:0006464	cellular protein modification process

Vocabulary: **Cellular Component**
Term	Definition
GO:0008180	COP9 signalosome
GO:0005737	cytoplasm
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR033008	CSN1
IPR019585	26S_proteasome_reg_su-Rpn7
IPR000717	PCI_dom

Homology

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: EWM28121.1 (fusca protein fus6 [Nannochloropsis gaditana])

HSP 1 Score: 620.2 bits (1598), Expect = 6.900e-174
Identity = 300/420 (71.43%), Postives = 355/420 (84.52%), Query Frame = 0

Query:   96 SDDIDAPNFDLEAYAARYVGPTKVRRLLFIAPRCKGRELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEHGVCVD 516
            +DDIDAPNFD++ YAARY G TK+RRLLFIA  CK RELDAYRLALD L +  S+N++LYR+V+GLVAGRLGPAY LD+ WA+ ++K+AA QKERLESDLQ+SRT +AKESIRLGYQDLGEF+YARGDLDNALKNFVRTRDYCS+ RH+V+MCLNVIKV+VGLDSF+HV+TYV+KAEH   +NDPK RHKLKAAAGL QLSQ +Y +AARKFL+CG +GLT+  P D  PA FA VLA EDVA YGGLCALASLDR EL+R +++N  F+GLLDLVP +RELIYDFC S+YG CL  L A+K EL+LD+HL RHV  LYQ+IRERC LQYF PYLSVDL  M+  F  P+  +EKE+A LI +NR+PAR+DSQ+KTLHRRQVDPRE GYKKVF MG++FLRE+RAML R SL+EH V V+
Sbjct:   46 NDDIDAPNFDIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVE 465

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: EWM28122.1 (fusca protein fus6 [Nannochloropsis gaditana])

HSP 1 Score: 602.4 bits (1552), Expect = 1.500e-168
Identity = 292/411 (71.05%), Postives = 346/411 (84.18%), Query Frame = 0

Query:  105 DLEAYAARYVGPTKVRRLLFIAPRCKGRELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEHGVCVD 516
            D++ YAARY G TK+RRLLFIA  CK RELDAYRLALD L +  S+N++LYR+V+GLVAGRLGPAY LD+ WA+ ++K+AA QKERLESDLQ+SRT +AKESIRLGYQDLGEF+YARGDLDNALKNFVRTRDYCS+ RH+V+MCLNVIKV+VGLDSF+HV+TYV+KAEH   +NDPK RHKLKAAAGL QLSQ +Y +AARKFL+CG +GLT+  P D  PA FA VLA EDVA YGGLCALASLDR EL+R +++N  F+GLLDLVP +RELIYDFC S+YG CL  L A+K EL+LD+HL RHV  LYQ+IRERC LQYF PYLSVDL  M+  F  P+  +EKE+A LI +NR+PAR+DSQ+KTLHRRQVDPRE GYKKVF MG++FLRE+RAML R SL+EH V V+
Sbjct:   43 DIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVE 453

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: XP_010255512.1 (PREDICTED: COP9 signalosome complex subunit 1 [Nelumbo nucifera])

HSP 1 Score: 401.7 bits (1031), Expect = 3.800e-108
Identity = 205/414 (49.52%), Postives = 281/414 (67.87%), Query Frame = 0

Query:   99 IDAPNFDLEAYAARYVGPTKVRRLLFIAPRC--KGRELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEH 511
            I +   D+EAYA+ Y G TK+ RLLFIA +C  +  +L+A R+A D +K+    N +L+REVV  + GRLGPAY++D AWAD ++++A  +KE+LE++L S RT+L KESIR+GY D G+FYYA G L +A KN+VRTRDYC+ ++H + MCLN I V++ +  F+HVN+YV+KAE TPD  DP    KL+ AAGL  L  + Y  AARKFLE G       +  +N    + +V+A +DVA YGGLCALAS DRTEL+ +V+DN+ FR  L+LVP +RELI+DF  S Y  CL  L  +K  L+LD+HL  HV  LY QIR +  +QY  P++SVDL  M+ AF   V  +EKE+  LI  N++ AR+DS  K L+ R  D R   +++V   G +F R+VRAMLLR +L++H
Sbjct:   29 ISSEQMDVEAYASLYSGRTKITRLLFIADQCGNQSMQLEALRMAYDEIKK--GENTQLFREVVQKIDGRLGPAYRMDQAWADNVDRRAEQRKEKLENELNSYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKNYVRTRDYCTTSKHIIQMCLNAILVSIEMGQFTHVNSYVSKAEQTPDALDPVTVAKLRCAAGLAHLDGKKYKLAARKFLETG------PELGNN----YTEVIAPQDVATYGGLCALASFDRTELKNKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLEYLENLKANLLLDIHLYDHVETLYNQIRHKALIQYTHPFVSVDLRMMASAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDRDVRAMLLRANLLKH 430

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: XP_008799523.1 (PREDICTED: COP9 signalosome complex subunit 1 [Phoenix dactylifera])

HSP 1 Score: 399.8 bits (1026), Expect = 1.500e-107
Identity = 205/408 (50.25%), Postives = 278/408 (68.14%), Query Frame = 0

Query:  105 DLEAYAARYVGPTKVRRLLFIAPRC--KGRELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEH 511
            D+EAYA+ Y G TKV RLLFIA RC  +G +L+A RLA D +K+    + +LYRE    +AGRLGP Y LD AWAD ++++A  +K++LE++L   +T+L KESIR+GY DLG+FYYA G L +A KN+VRTRDYC+ ++H + MCLNVI V++ L  F HV+ YV+KAE TPD  DP    KL+ AAGL  L  + Y  AARKFLE G       +  +N    +A+V+A +DVA YGGLCAL+S DRTEL+ +V+DN+ FR  L+LVP +RELI+DF  S+Y  CL  L  +K  L+LD+HL  HV  LY QIR +  +QY  P++SVDL  M++AF   V  +EKE+  LI  N++ AR+DS  K L+ R  D R   +++V   G +F R+ RAMLLR +L++H
Sbjct:   41 DVEAYASLYTGRTKVTRLLFIADRCGNEGMQLEALRLAYDEIKK--GEDSQLYREAASKIAGRLGPQYTLDQAWADSIDRRAEQRKDKLENELSGYKTNLIKESIRMGYNDLGDFYYAHGQLGDAFKNYVRTRDYCTTSKHIIQMCLNVILVSIELGQFMHVSNYVSKAEQTPDTLDPVTVAKLRCAAGLAYLEAKKYKLAARKFLETG------PELGNN----YAEVIAPQDVATYGGLCALSSFDRTELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCLEYLENLKPNLLLDIHLHDHVETLYTQIRHKAIIQYTHPFISVDLHTMADAFKTGVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGVEFERDARAMLLRANLIKH 436

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: XP_002272895.1 (PREDICTED: COP9 signalosome complex subunit 1 [Vitis vinifera] >CBI38768.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 397.9 bits (1021), Expect = 5.500e-107
Identity = 204/414 (49.28%), Postives = 279/414 (67.39%), Query Frame = 0

Query:   99 IDAPNFDLEAYAARYVGPTKVRRLLFIAPRCKGR--ELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEH 511
            I     D+EAYA+ Y G TK+ RLLFIA RC+ R  +++AYR+A D +K+    N +LYREVV  + GRLGP Y LD  W + +E++A  +KE+LE++L + RT+L KESIR+GY D G+FYYA G L +A KN+VRTRDYC+ ++H + MCLN I V++ +  F+HV +YV+KAE TP+  DP    KL+ AAGL  L  + Y  AARKFLE G       +  +N    + +V+A +DVA YGGLCALAS DRTEL+ +V+DN+ FR  L+LVP +RELI+DF  S Y  CL  LG +K  L+LD+HL  HV +LY QIR +  +QY  P++SVDL  M+ AF   V  +EKE+  LI  N++ AR+DS  K L+ R  D R   +++V   G +F R+VRAMLLR +L++H
Sbjct:   30 ISGEALDIEAYASLYSGRTKITRLLFIADRCENRQMQMEAYRMAYDEIKK--GENTQLYREVVQKIDGRLGPQYGLDLVWTESVERRADQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIHMCLNAILVSIEMGQFTHVTSYVSKAEQTPEALDPVTVAKLRCAAGLAHLEAKKYKLAARKFLETGA------ELGNN----YTEVIAPQDVATYGGLCALASFDRTELKNKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLDYLGNLKTNLLLDIHLHDHVEMLYNQIRHKALIQYTHPFVSVDLRMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGNEFDRDVRAMLLRANLLKH 431

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: XP_010919243.1 (PREDICTED: COP9 signalosome complex subunit 1 [Elaeis guineensis])

HSP 1 Score: 394.4 bits (1012), Expect = 6.100e-106
Identity = 203/408 (49.75%), Postives = 277/408 (67.89%), Query Frame = 0

Query:  105 DLEAYAARYVGPTKVRRLLFIAPRC--KGRELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEH 511
            D+EAY + Y G TKV RLLFIA RC  +G +L+A RLA D +K+    + +LYR+V   +AGRLGP Y LD AWADG++++A  +K++LE++L   +T+L KESIR+GY DLG+FYYA G L +A KN+VRTRDYC+ ++H + MCLNVI V++ L  F HV+ YV+KAE TPD+ D     KL+ AAGL  L  + Y  AARKFLE G       +  +N    + +V+A +DVA YGGLCAL+S DR+EL+ +V+DN+ FR  L+LVP +RELI+DF  S Y  CL  L  +K  L+LD+HL  HV  LY QIR +  +QY  P++SVDL  M+ AF   V  +EKE+  LI  N++ AR+DS  K L+ R  D R   +++V   G +F R+VRAMLLR +L++H
Sbjct:   41 DVEAYGSLYTGRTKVIRLLFIADRCGNEGMQLEALRLAYDEIKK--GEDSQLYRDVASKIAGRLGPQYDLDQAWADGIDRRAEQRKDKLENELNGYKTNLIKESIRMGYNDLGDFYYAHGQLGDAFKNYVRTRDYCTTSKHIIHMCLNVILVSIELGQFMHVSNYVSKAEQTPDMLDAVTVAKLRCAAGLAYLEAKKYKLAARKFLETG------PELGNN----YTEVIAPQDVATYGGLCALSSFDRSELKSKVIDNINFRNFLELVPEVRELIHDFYASHYASCLEYLENLKPNLLLDIHLHDHVETLYTQIRHKAIIQYTHPFISVDLHTMASAFKTGVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFERDVRAMLLRANLIKH 436

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: XP_010933872.1 (PREDICTED: COP9 signalosome complex subunit 1 [Elaeis guineensis])

HSP 1 Score: 393.3 bits (1009), Expect = 1.400e-105
Identity = 204/408 (50.00%), Postives = 277/408 (67.89%), Query Frame = 0

Query:  105 DLEAYAARYVGPTKVRRLLFIAPRC--KGRELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEH 511
            D+EAYA+ Y+G TKV RLLF+A RC  +G +L+A RLA D +K+ G  +  LYREV G +AGRLGP Y LD AWAD ++++A  +K++L+++L   RT+L KESIR+GY DLG+FYYA G L +A KN+VRTRDYC+ ++H + MCLNVI V++ L  F HV+ YV KAE TP+  D     KL+ AAGL  L  + Y  AARKFLE G       +  +N    + +V+A +DVA YGGLCALAS DRTEL+ +V+DN+ FR  L+LVP +RELI+DF  S+Y  CL  L  +K  L+LD+HL  HV  LY QIR +  +QY  P+ SVDL  M+ AF   V  +EKE+  LI  N++ AR+DS  K L+ R  D R   +++V   G +F R+V+A+LLR +L++H
Sbjct:   42 DVEAYASLYIGRTKVMRLLFMAERCGNEGMQLEALRLAYDEIKKGGDSH--LYREVAGKIAGRLGPQYTLDQAWADAIDRRAEQRKDKLDNELNGYRTNLIKESIRMGYNDLGDFYYAHGQLGDAFKNYVRTRDYCTTSKHIIQMCLNVILVSLELGQFLHVSNYVGKAEQTPESLDSITAAKLRCAAGLAYLEAKKYKLAARKFLETG------PELGNN----YTEVIAPQDVATYGGLCALASFDRTELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCLEYLENLKPNLLLDIHLHDHVEALYTQIRHKAIIQYTHPFSSVDLHTMAGAFKTNVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVRQTGVEFERDVKALLLRANLIKH 437

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: PIA49569.1 (hypothetical protein AQUCO_01300395v1, partial [Aquilegia coerulea])

HSP 1 Score: 391.3 bits (1004), Expect = 5.200e-105
Identity = 201/421 (47.74%), Postives = 279/421 (66.27%), Query Frame = 0

Query:   99 IDAPNFDLEAYAARYVGPTKVRRLLFIAPRCKGR--ELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEHGVCVDGG 518
            I +   D+EAYA+ Y G TK+ RLLFIA RC  +  EL+A R+A D +K+    N +L+REVV  + GRLGP+Y +D +WAD ++++A  +K++LE++L + +T+L KESIR+GY D G+F+YA G L +A KN+ RTRDYC+  +H + MCLN I V + +  F+HV   VTKAE +PDL DP    KL+ A+GL  L  + Y +AARKFLE     +T D  N+     +  V+A +DVA YGGLCALAS DRTEL+ +V+DN+ FR  L+LVP +RE+I DF  S Y  CL  L  +K  L+LD+HL  H+  LY QIR +  +QY  P++SVDL  M+ AF   V  +EKE+  LI  N++ AR+DS  K L+ R  D R   +++V  MG DF R+V+AMLLR +L++H   V GG
Sbjct:   38 ISSEQLDVEAYASLYSGRTKISRLLFIADRCGNQTMELEALRMAYDEIKK--GENTQLFREVVQKIDGRLGPSYVMDQSWADSVDRRAEIRKDKLENELNAYKTNLIKESIRMGYNDFGDFFYAHGSLQDAFKNYSRTRDYCTTPKHIIQMCLNTILVGIEMGQFTHVINSVTKAEQSPDLVDPVIIAKLRCASGLACLENKKYKHAARKFLE-----ITPDLANN-----YTDVIAPQDVATYGGLCALASFDRTELKNKVIDNLNFRNFLELVPEVREIINDFYSSHYASCLEYLNNLKANLLLDIHLHDHIETLYNQIRHKALIQYTLPFVSVDLNMMAGAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLKMGNDFDRDVKAMLLRANLLKHEYNVRGG 446

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BLAST of NO05G02670 vs. NCBI_GenBank
Match: CAN74681.1 (hypothetical protein VITISV_025856 [Vitis vinifera])

HSP 1 Score: 389.8 bits (1000), Expect = 1.500e-104
Identity = 204/424 (48.11%), Postives = 279/424 (65.80%), Query Frame = 0

Query:   99 IDAPNFDLEAYAARYVGPTKVRRLLFIAPRCKGR--ELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELR----------RRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEH 511
            I     D+EAYA+ Y G TK+ RLLFIA RC+ R  +++AYR+A D +K+    N +LYREVV  + GRLGP Y LD  W + +E++A  +KE+LE++L + RT+L KESIR+GY D G+FYYA G L +A KN+VRTRDYC+ ++H + MCLN I V++ +  F+HV +YV+KAE TP+  DP    KL+ AAGL  L  + Y  AARKFLE G       +  +N    + +V+A +DVA YGGLCALAS DRTEL+           +V+DN+ FR  L+LVP +RELI+DF  S Y  CL  LG +K  L+LD+HL  HV +LY QIR +  +QY  P++SVDL  M+ AF   V  +EKE+  LI  N++ AR+DS  K L+ R  D R   +++V   G +F R+VRAMLLR +L++H
Sbjct:   30 ISGEALDIEAYASLYSGRTKITRLLFIADRCENRQMQMEAYRMAYDEIKK--GENTQLYREVVQKIDGRLGPQYGLDLVWTESVERRADQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIHMCLNAILVSIEMGQFTHVTSYVSKAEQTPEALDPVTVAKLRCAAGLAHLEAKKYKLAARKFLETGA------ELGNN----YTEVIAPQDVATYGGLCALASFDRTELKASIECFSFSINKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLDYLGNLKTNLLLDIHLHDHVEMLYNQIRHKALIQYTHPFVSVDLRMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGNEFDRDVRAMLLRANLLKH 441

[Close]

BLAST of NO05G02670 vs. NCBI_GenBank
Match: NP_001149716.1 (fusca homolog [Zea mays] >ACG36499.1 COP9 signalosome complex subunit 1 [Zea mays])

HSP 1 Score: 389.4 bits (999), Expect = 2.000e-104
Identity = 199/414 (48.07%), Postives = 285/414 (68.84%), Query Frame = 0

Query:   99 IDAPNFDLEAYAARYVGPTKVRRLLFIAPRC--KGRELDAYRLALDTLKERGSMNVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRTSLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLNVIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHYTNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLDRTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGELMLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEKEVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRAMLLRTSLVEH 511
            + A   D+EAYAA+Y G T++ RLLF+A RC  +  +L+A R+A D +K RG  +V+L+R+VV  + GRLGP Y LD AW   + ++A  +KE+LES+L   RT+L KESIR+GY D+G+F+YA G L +A K+++RTRDYC+ ++H V MC+NVI V++ L  ++HV+ YV+KAE TPD  DP    KLKAAAGL  L  + Y  AARKF+E G+      +  +N    F++V+A +DVAVYG LCALAS DR++L+ +V+DN+ FR  LDLVP +REL+ DF  S+YG CL  L  +K  L+LD+HL +HV  LY +IR +  +QY  P++SVDL  M+ AF   V  ++KE+A LI  +++ AR+DS  K L+ R  D R   +++V   G DF R+V++MLLR +L++H
Sbjct:   32 VSAEQLDVEAYAAQYSGRTRLVRLLFVADRCGVEAMQLEALRMAYDEIK-RGE-DVQLHRDVVTKIGGRLGPRYGLDQAWVFSVSRRADQRKEKLESELNGYRTNLIKESIRMGYNDIGDFFYAHGQLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQYAHVSNYVSKAEQTPDSLDPTIVAKLKAAAGLANLETKKYKFAARKFVETGI------ELGNN----FSEVIAPQDVAVYGALCALASFDRSDLKSKVIDNINFRNFLDLVPEVRELVNDFYASRYGSCLGHLEKLKPNLLLDIHLHQHVETLYMEIRHKAIIQYTLPFISVDLNTMAAAFKTSVSMLQKELAALITEDKIQARIDSHNKILYARHADQRNATFQRVLQTGNDFERDVKSMLLRANLLKH 433

The following BLAST results are available for this feature:

BLAST of NO05G02670 vs. NCBI_GenBank

BLAST of NO05G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28121.1	6.900e-174	71.43	fusca protein fus6 [Nannochloropsis gaditana]	[more]
EWM28122.1	1.500e-168	71.05	fusca protein fus6 [Nannochloropsis gaditana]	[more]
XP_010255512.1	3.800e-108	49.52	PREDICTED: COP9 signalosome complex subunit 1 [Nel...	[more]
XP_008799523.1	1.500e-107	50.25	PREDICTED: COP9 signalosome complex subunit 1 [Pho...	[more]
XP_002272895.1	5.500e-107	49.28	PREDICTED: COP9 signalosome complex subunit 1 [Vit...	[more]
XP_010919243.1	6.100e-106	49.75	PREDICTED: COP9 signalosome complex subunit 1 [Ela...	[more]
XP_010933872.1	1.400e-105	50.00	PREDICTED: COP9 signalosome complex subunit 1 [Ela...	[more]
PIA49569.1	5.200e-105	47.74	hypothetical protein AQUCO_01300395v1, partial [Aq...	[more]
CAN74681.1	1.500e-104	48.11	hypothetical protein VITISV_025856 [Vitis vinifera...	[more]
NP_001149716.1	2.000e-104	48.07	fusca homolog [Zea mays] >ACG36499.1 COP9 signalos...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL083	nonsL083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR121	ngnoR121	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR117	ngnoR117	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003601	NSK003601	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G02670.1	NO05G02670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553582	gene_3070	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100036g40	gene2433	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G02670.1	NO05G02670.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G02670 ID=NO05G02670|Name=NO05G02670|organism=Nannochloropsis oceanica|type=gene|length=3780bp
TTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTTGAAGAATTCTTCCC
ACATTTGGAGCACGGTCCATCCTGCTACTAAAGCCCAGAGGTGAGCGCTG
TCTCTGGCGCTGACATCACCGACAACCCCCTCCGAATCTGCGGTTGGTGG
TGGCGGCGAGTGAGGGGGTAGCAAGCGCAGTAATGTCTGGTGCTGTAGGA
TGATGAAGGCGTAGGTGCGTTGAAACAGCTCAGAATACCGACTCAACTGC
AGTAAGAGGCCCGCTTCCCGTGCAAAGAGGTACTGCTGTACTTCGAGCAT
CCCAATGCTGCTCCCTGACTTCTCGCTGCCTTCTTGCCCCGTCGTTGCCC
CGAGCTTCGCTCGAAATTCAAAGACGGGAAAATCCAATACGGGAACACCA
CCACCGGCCATCGCGTTCATCCCACCACCTCTACCACCACTAGAAGAAGC
CACTCGACTGGGCTGAAACATCATCAGGGTCTTGGGCGGCATGATCACGC
TATTTCCACTACTACTACCACTACTACTACTACTACTACTACTACTCCTC
CTCCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTACCACTACTACC
ACCACCACCACCACCACCACCACTACTCCTCCCAAAGTCGGCAGCAGAAG
AGGGCATCAGAGCCGCTTGCCAGCGATTGGTTAAAGCAGACAATTCCTGA
TAATGATGCAAAGCCTCCCCCGGAAGCTGAAGTTGCTCATTCATCAATGC
CAAGCTCTCCTTGGCAAAAAACAAGCGGAAAAAGAAATCTTCCCCAGGGG
CAGCAGCAGCAGCAGCAGCAGTGGCAGTACGACTAGAGGCCCCTTCCTCC
AACTCACGGACCTGCTCCTGATAAGCCTTCGAACGGGCAATAAATGTGTT
CCCCACTACCGTCTTAATTTTCGCCATAACATCCCCCCACTGCTCCTGAT
GATTCTGCTGCAGAATGATGCCGTTCCCCGCCCCGGTACCTGCGGGCCCT
CGCCCCCCCATGGAACCCGACACACCCTGCTCAAACAGCGTCAACATACT
CGACCGGTCCCCCGTCACTTTGCTACAAAAGTCCGCCGCTATCCTCGAAT
AAATCTTGAGGTATATATCATGCGTGTTGTTCTGCGTGCCCAAGGGGACA
TAGACCAACAACCATTCTTCGTGCCGCTCTGTTCGCTCGTCGACCCAGGC
CTTGACCTTGGCCTTTACAGCGGTCTTGTACGCCTCGGTCGTCTCACAAA
CCACTAGATTTAGATGCGCATATGGAGCGCGATAATCGCTCGTACGACCT
CCGTCTCGTCCTCCCAGGTTTCTGAAGAGGGCATGGTCGTGGGCTACCAC
TTGCACAGGCAGCCTCGAGATCGTGACGAGGGTGCTGCCCGAGGTGCCCG
AAGGCAGCCGGGTGCGCCAAGCTACATCTCTCAGGGGAAGTTGCGCCTTA
AAATACCGCTCCAAAAACTGCCAGACTTGTCCGAGCTCGTCATGGTAGGC
CAAGGCACACACGGTGGAGGTGGTTGGAGTGGTGGAGTGGGAGGCAGAGT
TGGAGGAGAGGGAGGACTTTGGGCCAGAGGAGGAGAGCAGTGGAGGCGGA
TGCAACGGCCGTGGGGGCGGGTCCATGGCCTTGATATATCGTACCCTGCT
GCTGCGCTGAGGACGAGATAGTGAGAAACGCACGTAAAAGTGAGAACAAC
AGAGTTGTTGTGTTGAGCAAGGGCATGGTGAAGAAGCAAGAGCGAACGTC
GCGCCTCCTCTCGCCGGACGCGCTTGAGGTTTGTTCCAAGACCCACATAT
CGCAACCCTTACCACACACCACAGACAAATATCAGCCTCAAATGCAAGCG
GCAGCGCCCAACGTGGAGGAGAGGGACATGGAGGTAGTGGACGCCAACGC
TCTTGACGCGGAAGAGGGAGGAGGTGAGGGTGCTCATTCAGCCTCGTCCT
CGGCTGCACCAGCAGCCCAAACCTGCAGCACAAACAACACGAGCAGCAGT
AGATGCGGCAGCGATGACATTGATGCGCCCAATTTCGgtacgtttttgat
agtgacgctgggtgtctcgagtaaagagtcaatgttgactctccccttgt
gcctcctatcatttttcgtaagacttcctctcttcttattctgtgcccgc
gccccgcctttccacaaacccgcctcgcgctccccgccacttggctactt
tttaccaggcctgcgtgctctcttcctttatttgttcctacccattaacc
cggtcgcccaccttcctctctgtacccccaatccttttaatcccaccctt
tttagACCTCGAAGCCTACGCGGCCAGGTACGTTGGCCCCACCAAGGTCC
GTCGCCTACTCTTTATTGCGCCCCGTTGCAAGGGTCGGGAGCTGGACGCG
TACCGCCTTGCCTTGGATACCCTGAAAGAGCGGGGATCGATGAATGTGGA
GCTGTACCGGGAGGTGGTGGGTTTGGTTGCTGGCCGTTTAGGTCCTGCGT
ATCAGCTGGACTCTGCATGGGCGGATGGGCTTGAGAAGCAGGCAGCGGCA
CAGAAGGAACGGTTAGAGAGTGATTTGCAGAGTTCGCGGACGAGTTTGGC
GAAGGAGAGCATTCGATTGGGGTATCAAGATTTGGGGGAATTTTATTATG
CCCGTGGTGATTTGGATAATGCCTTGAAGAACTTTGTCCGTACCCGGGAC
TACTGCTCCATGACCCGTCATAGCGTCGATATGTGCCTGAACGTGATCAA
GGTGGCCGTGGGGCTCGACAGCTTCTCGCATGTCAACACCTACGTCACGA
AAGCCGAACATACCCCTGACTTGAACGATCCCAAGGCCCGGCACAAGCTC
AAGGCTGCCGCCGGGCTCGTTCAACTCTCCCAACAGCACTATACGAACGC
TGCACGGAAATTTCTTGAATGTGGGGTTGCGGGGCTGACGAAGGATAAGC
CTAACGATAATGCTCCTGCTCCCTTCGCTCAGGTCCTGGCTGCGGAGGAC
GTGGCGGTGTATGGGGGGTTGTGCGCGTTGGCCTCGCTTGATCGGACGGA
ACTGCGACGACGGGTGGTGGATAACATGGCTTTTAGGGGCTTACTAGATC
TGGTCCCATGGATGCGGGAGCTGATTTATGATTTCTGTGGCTCGAAGTAT
GGGGGCTGCTTGAGGGTCTTGGGTGCGATGAAGGGGGAGTTAATGCTGGA
CTTACATCTAGCACGGCATGTGAGTGTTTTATACCAGCAGATACGCGAGA
GATGCTTCTTGCAGTATTTTTCGCCGTATCTGAGCGTGGACTTGGCGAGG
ATGAGCGAGGCCTTTGGTGCGCCGGTGGGGGAGATGGAAAAGGAGGTGGC
CAAATTGATCCGGAGTAATCGGTTGCCGGCACGTGTGGACAGTCAGAAGA
AGACATTGCACAGGCGTCAGGTGGACCCGAGGGAGGAGGGGTATAAGAAA
GTGTTTGGGATGGGCAAGGATTTCCTGAGGGAGGTGAGGGCGATGCTGTT
GAGAACGAGTTTGGTGGAGCATGGGGTGTGTGTGGATGGAGGAGGAGTGG
GAGGGAGGGAGGGAGGAAGAAGGGGGTTTCTGGCTGGTGGGCGTTTGAGC
CAGTCGCATTCGATGGGAATCACGGGGGGCTTTGTGGGTGGGAGAGGGAG
GGGTGGGGGGAGGGAGGGGAGGATGGAAGGGGAGAGTTCGGCGGAGGAGG
AGGAGGGAGAGGAGGAGGAGGAGGAGGAGGAGATGATGGAGGGAGGGGAT
GAGCACCATGGGTGTGGGGGGGGGGGGTAG

protein sequence of NO05G02670.1

>NO05G02670.1-protein ID=NO05G02670.1-protein|Name=NO05G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp
MVKKQERTSRLLSPDALEVCSKTHISQPLPHTTDKYQPQMQAAAPNVEER
DMEVVDANALDAEEGGGEGAHSASSSAAPAAQTCSTNNTSSSRCGSDDID
APNFDLEAYAARYVGPTKVRRLLFIAPRCKGRELDAYRLALDTLKERGSM
NVELYREVVGLVAGRLGPAYQLDSAWADGLEKQAAAQKERLESDLQSSRT
SLAKESIRLGYQDLGEFYYARGDLDNALKNFVRTRDYCSMTRHSVDMCLN
VIKVAVGLDSFSHVNTYVTKAEHTPDLNDPKARHKLKAAAGLVQLSQQHY
TNAARKFLECGVAGLTKDKPNDNAPAPFAQVLAAEDVAVYGGLCALASLD
RTELRRRVVDNMAFRGLLDLVPWMRELIYDFCGSKYGGCLRVLGAMKGEL
MLDLHLARHVSVLYQQIRERCFLQYFSPYLSVDLARMSEAFGAPVGEMEK
EVAKLIRSNRLPARVDSQKKTLHRRQVDPREEGYKKVFGMGKDFLREVRA
MLLRTSLVEHGVCVDGGGVGGREGGRRGFLAGGRLSQSHSMGITGGFVGG
RGRGGGREGRMEGESSAEEEEGEEEEEEEEMMEGGDEHHGCGGGG*

Synonyms

Publications