NO05G01790, NO05G01790 (gene) Nannochloropsis oceanica

Overview
NameNO05G01790
Unique NameNO05G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5497
Alignment locationchr5:490481..495977 -

Link to JBrowse

Properties
Property NameValue
DescriptionF-actin-capping protein subunit beta
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:490481..495977 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0051016barbed-end actin filament capping
GO:0051693actin filament capping
GO:0051016barbed-end actin filament capping
Vocabulary: Cellular Component
TermDefinition
GO:0008290F-actin capping protein complex
GO:0008290F-actin capping protein complex
GO:0005856cytoskeleton
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR037282CapZ_alpha/beta
IPR001698CAPZB
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
Homology
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: EWM28164.1 (f-actin-capping protein subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 323.6 bits (828), Expect = 7.400e-85
Identity = 181/347 (52.16%), Postives = 223/347 (64.27%), Query Frame = 0 
Query:   11 RKQLRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDED-DPNDRGGG--NNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATARGAGAT---ASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRKPPP-----------------------PLDCRRYGQTVFPSCVGASAEHTQSLFAAIAKHAALRGDKDGD 329
            ++QLRACLNLMRRLPP+KQ+ NL+ L  LV   +GEEL + VD+PLEE ID +TNQ YLLC +NR+G+SHRSPWSN YFPP P  S+L++P   LR+LEV+ANA FQIYRELYYDGQGVSSV+ W+L DED D ++  G    +   A    GFAGCFAIKK V+G R+ R GTWD+ HVVEVQ      G     A YKLTST+Q+SLF    +  + C A  +T+  EATH VV S GGH++N+GRMIED+EI +RGDL  LY+QRT DIV  VR+                          P +    GQ  F      S+EH +SLFAAIA+  A R     D
Sbjct:    9 QEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRRSSATTKSKGGGVYGENSAEGTRARQRPAEVLSVGQASF------SSEHQKSLFAAIARRNAERESNHKD 349
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: GAY00204.1 (F-actin-capping protein subunit beta, putative [Pythium insidiosum])

HSP 1 Score: 242.3 bits (617), Expect = 2.200e-60
Identity = 134/273 (49.08%), Postives = 179/273 (65.57%), Query Frame = 0 
Query:   13 QLRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATARGAGA---TASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            QL ACLNLMRR+PP   + +L SL +LV P L +EL + VD PL+ A+DP   + YLLCDYNRDG SHRSPWSN Y P  P  +  +FP +SLR LEV+AN +F  YRELYY G G+SSV+ WDL    DP                GFA CF +KK V+G+R    G+W+S+HV EVQ TA  A A    A+Y+LT+TV +++ V+ P++G+    GT+TR  E T   +  A  HV+NMGRM+EDMEI +R  +D LY+ +TR++++ +RK
Sbjct:    6 QLTACLNLMRRMPPRHVEQDLYSLTRLV-PSLTDELYQRVDQPLQVAVDPSNGRKYLLCDYNRDGDSHRSPWSNXYDPEIP-DNEGFFPSESLRDLEVQANEIFDSYRELYYQG-GISSVYMWDL----DP----------------GFAACFLVKKDVVGSRFVENGSWNSIHVFEVQETAEPAVAGKKKATYRLTTTVLLAMKVNRPELGDTTFDGTLTRQAERT-LEIADAFDHVSNMGRMVEDMEIDMRSSMDGLYISKTREVINGMRK 254
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: XP_009037895.1 (hypothetical protein AURANDRAFT_27922 [Aureococcus anophagefferens] >EGB07262.1 hypothetical protein AURANDRAFT_27922 [Aureococcus anophagefferens])

HSP 1 Score: 227.3 bits (578), Expect = 7.200e-56
Identity = 134/269 (49.81%), Postives = 168/269 (62.45%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATARGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            +   L++MRR+PP+K + NL  L+ LV PE  +EL + VD PLEEA   E+ + YLLCDYNRDG S+RSPWSN Y PP       + P   LRALEVEANALF  YRELY++G G SSV+ WDL                      GFAGCF IKK V G      G WDS+HVVEV   A      A+YKLT+TV +S+ V  P +G++ L+G++TR  E   A V  A  HVAN+G MIEDME  +R  LD LY+Q+TR++VSS+RK
Sbjct:    9 ISCALSIMRRMPPNKIEHNLSGLLNLV-PEHTDELLQRVDQPLEEATCAESGRKYLLCDYNRDGDSYRSPWSNAYEPP---LDDGFVPSAKLRALEVEANALFDAYRELYFEG-GTSSVYLWDL--------------------DGGFAGCFLIKKGVSGHEFVSTGAWDSIHVVEV---AEAGDGRATYKLTTTVMLSMDVHKPAVGDSNLSGSLTRMAEKACA-VDEAHPHVANIGSMIEDMETDIRTYLDSLYIQKTREVVSSIRK 248
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: XP_009526386.1 (hypothetical protein PHYSODRAFT_331311 [Phytophthora sojae] >EGZ17328.1 hypothetical protein PHYSODRAFT_331311 [Phytophthora sojae])

HSP 1 Score: 223.4 bits (568), Expect = 1.000e-54
Identity = 122/273 (44.69%), Postives = 176/273 (64.47%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATA----RGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            + +CLNLMRR+PP + + ++ +L +L+ P L ++L + VD PL+ A+DP   + YLLCDYNRDG S+RSPWSN+Y PP P     Y P ++LR LEV+AN +F  YRELYY G G+SSV+ WDL                      GFA CF ++K V+  R   +G+W+S+HV+EVQ  +    +G    A+Y+LT++V +S+ V+ P++G+  L GT+TR  E T A       HV+NMGRM+EDMEI +R  LD LY+ +TR++V+ +RK
Sbjct:    7 MTSCLNLMRRMPPREVETDVYNLTRLL-PALADDLYQRVDQPLQVAVDPTNGRKYLLCDYNRDGDSYRSPWSNQYDPPAPEGEGFY-PSETLRELEVQANEIFDSYRELYYQG-GISSVYMWDLE--------------------PGFAACFLVQKDVLDQRFVEKGSWNSIHVIEVQEGSDVLDKGV-KRATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTLAFEDQF-AHVSNMGRMVEDMEIDMRSSLDGLYISKTREVVNGMRK 254
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: POM81245.1 (F-actin-capping protein subunit beta [Phytophthora palmivora var. palmivora])

HSP 1 Score: 222.6 bits (566), Expect = 1.800e-54
Identity = 120/273 (43.96%), Postives = 176/273 (64.47%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATA----RGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            + +CLNLMRR+PP + + ++ +L +L +P L +EL + VD PL+ A+DP   + YLLCDYNRDG S+RSPW+N+Y  PP      ++P ++LR LEV+AN +F  YRELYY G G+SSV+ WDL                      GFA CF +KK V+  R   +G+W+S+HV+EVQ  +    +G    A+Y+LT++V +S+ V+ P++G+  L GT+TR TE T         HV+NMGRM+EDMEI +R  LD LY+ +TR++++ +RK
Sbjct:    9 MTSCLNLMRRMPPREVETDVYNLTRL-APSLADELYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNEY-DPPAADGEGFYPSETLRELEVQANEIFDSYRELYYQG-GISSVYMWDLE--------------------PGFAACFLVKKDVVDQRFVEKGSWNSIHVIEVQEGSDVLDKGV-KKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQTERTMEFEDQF-AHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 256
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: OQR91838.1 (F-actin-capping protein subunit beta [Achlya hypogyna])

HSP 1 Score: 221.1 bits (562), Expect = 5.200e-54
Identity = 122/269 (45.35%), Postives = 166/269 (61.71%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATARGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            L  CLN++RR+PP +  ++L  L  LV PEL +EL + VD PL + +DP T + +LLCDYNRDG SHRSPWSN YFPP       + P DSLR LEV+AN +F +YRE+YY G G+SSV+ WDL                      GFA CF IKK V   R  + G W+S+HV+EVQ     +   A YKLT+T+ +++ V+  ++G   L G +TR TE T     S   H+ NMGR+IEDMEI +R  LD +Y+ +TR++++ +RK
Sbjct:    6 LSCCLNVLRRMPPGQVAEDLRGLSALV-PELEDELLQRVDQPLGQMVDPTTGRAFLLCDYNRDGDSHRSPWSNAYFPPID-DGEGFTPSDSLRQLEVQANEIFDVYREMYYQG-GISSVYMWDLE--------------------PGFAACFLIKKDVHQQRFVQNGGWNSIHVIEVQ---EKSAKEAVYKLTTTILLTMDVNRVELGHLNLDGNLTRQTEKT-LPFDSQSAHLTNMGRLIEDMEIEMRSSLDRVYISKTREVINGIRK 247
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: XP_002900965.1 (F-actin-capping protein subunit beta, putative [Phytophthora infestans T30-4] >EEY59355.1 F-actin-capping protein subunit beta, putative [Phytophthora infestans T30-4])

HSP 1 Score: 219.5 bits (558), Expect = 1.500e-53
Identity = 120/273 (43.96%), Postives = 173/273 (63.37%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATA----RGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            + +CLNLMRR+PP + + ++ +L +LV P + +EL + VD PL+ A+DP   + YLLCDYNRDG S+RSPW+N+Y  PP      +FP ++LR LEV AN +F  YRELYY G G+SSV+ WDL                      GFA CF +KK V+  R   +G W+S+HV+EVQ  +    +G    A+Y+LT++V +S+ V+ P++G+  L GT+TR  E T         HV+NMGRM+EDMEI +R  LD LY+ +TR++++ +RK
Sbjct:   12 MTSCLNLMRRMPPREVETDVYNLTRLV-PSIADELYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQY-DPPASDGEGFFPSETLRELEVHANEIFDSYRELYYQG-GISSVYMWDLE--------------------LGFAACFLVKKDVLDQRFIEKGEWNSIHVIEVQEGSDVLDKGV-KKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTMEFEDQF-AHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 259
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: OWZ14437.1 (F-actin-capping protein subunit beta [Phytophthora megakarya])

HSP 1 Score: 219.5 bits (558), Expect = 1.500e-53
Identity = 120/273 (43.96%), Postives = 175/273 (64.10%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATA----RGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            + ACLNLMRR+PP + + ++ +L +LV P L +EL + VD PL+ A+DP   + YLLCDYNRDG S+RSPW+N+Y  P       ++P ++LR LEV+AN +F  YRELYY G G+SSV+ WDL                      GFA CF +KK V+  R   +G+W+S+HV+EVQ  +    +G    A+Y+LT++V +S+ V+ P++G+  + GT+TR TE T         HV+NMGRM+EDMEI +R  LD LY+ +TR++++ +RK
Sbjct:    6 MTACLNLMRRMPPREVETDVYNLTRLV-PSLTDELYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQY-DPAVSDGEGFYPSETLRELEVQANEIFDSYRELYYQG-GISSVYMWDLE--------------------PGFAACFLVKKDVLDQRFVEKGSWNSIHVIEVQEGSDVLDKGV-KKATYRLTTSVLLSMKVNRPELGDLTMDGTLTRQTERTMEFEDQF-AHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 253
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: ETL40036.1 (hypothetical protein L916_08701 [Phytophthora parasitica] >ETP16490.1 hypothetical protein F441_08915 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 218.4 bits (555), Expect = 3.400e-53
Identity = 117/273 (42.86%), Postives = 174/273 (63.74%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATA----RGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            + +CLNLMRR+PP + + ++ +L +LV P + ++L + VD PL+ A+DP   + YLLCDYNRDG S+RSPW+N+Y  PP      ++P ++LR LE++AN +F  YRELYY G G+SSV+ WDL                      GFA CF +KK V+  R   +G W+S+HV+EVQ  +    +G    A+Y+LT++V +S+ V+ P++G+  L GT+TR  E T         HV+NMGRM+EDMEI +R  LD LY+ +TR++++ +RK
Sbjct:   11 MTSCLNLMRRMPPREVETDVYNLTRLV-PSIADDLYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQY-DPPAADGEGFYPSETLRELEIQANEIFDSYRELYYQG-GISSVYMWDLE--------------------PGFAACFLVKKDVVDQRFVEKGEWNSIHVIEVQEGSDVLDKGV-KKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTMEFEDQF-AHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 258
[Close]
BLAST of NO05G01790 vs. NCBI_GenBank
Match: XP_008905840.1 (hypothetical protein PPTG_11511 [Phytophthora parasitica INRA-310] >ETI46700.1 hypothetical protein F443_08944 [Phytophthora parasitica P1569] >ETK86626.1 hypothetical protein L915_08773 [Phytophthora parasitica] >ETL93168.1 hypothetical protein L917_08618 [Phytophthora parasitica] >ETM46460.1 hypothetical protein L914_08652 [Phytophthora parasitica] >ETN08653.1 hypothetical protein PPTG_11511 [Phytophthora parasitica INRA-310] >ETO75391.1 hypothetical protein F444_09013 [Phytophthora parasitica P1976] >ETP44551.1 hypothetical protein F442_08875 [Phytophthora parasitica P10297] >KUF88467.1 hypothetical protein AM588_10002717 [Phytophthora nicotianae])

HSP 1 Score: 218.0 bits (554), Expect = 4.400e-53
Identity = 117/273 (42.86%), Postives = 174/273 (63.74%), Query Frame = 0 
Query:   14 LRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAECVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYFPPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGNNSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATA----RGAGATASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANMGRMIEDMEISVRGDLDVLYMQRTRDIVSSVRK 283
            + +CLNLMRR+PP + + ++ +L +LV P + ++L + VD PL+ A+DP   + YLLCDYNRDG S+RSPW+N+Y  PP      ++P ++LR LE++AN +F  YRELYY G G+SSV+ WDL                      GFA CF +KK V+  R   +G W+S+HV+EVQ  +    +G    A+Y+LT++V +S+ V+ P++G+  L GT+TR  E T         HV+NMGRM+EDMEI +R  LD LY+ +TR++++ +RK
Sbjct:   11 MTSCLNLMRRMPPREVETDVYNLTRLV-PSIADDLYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQY-DPPAADGEGFYPSETLRELEIQANEIFDSYRELYYQG-GISSVYMWDLE--------------------PGFAACFLVKKDVVDQRFVEKGGWNSIHVIEVQEGSDVLDKGV-KKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTMEFEDQF-AHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 258
The following BLAST results are available for this feature:
BLAST of NO05G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28164.17.400e-8552.16f-actin-capping protein subunit beta [Nannochlorop... [more]
GAY00204.12.200e-6049.08F-actin-capping protein subunit beta, putative [Py... [more]
XP_009037895.17.200e-5649.81hypothetical protein AURANDRAFT_27922 [Aureococcus... [more]
XP_009526386.11.000e-5444.69hypothetical protein PHYSODRAFT_331311 [Phytophtho... [more]
POM81245.11.800e-5443.96F-actin-capping protein subunit beta [Phytophthora... [more]
OQR91838.15.200e-5445.35F-actin-capping protein subunit beta [Achlya hypog... [more]
XP_002900965.11.500e-5343.96F-actin-capping protein subunit beta, putative [Ph... [more]
OWZ14437.11.500e-5343.96F-actin-capping protein subunit beta [Phytophthora... [more]
ETL40036.13.400e-5342.86hypothetical protein L916_08701 [Phytophthora para... [more]
XP_008905840.14.400e-5342.86hypothetical protein PPTG_11511 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003689NSK003689Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01790.1NO05G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539939gene_2969Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g104gene2357Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01790.1NO05G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01790 ID=NO05G01790|Name=NO05G01790|organism=Nannochloropsis oceanica|type=gene|length=5497bp
ATTTCGTATTCCATTCTCCTTTCTTCTTTTCTACGCTGACTTGTGTGTGC
GTCCGTTACTATGTACGTGGATGCTCTCCGATTTAAAAGCATGCGAACTC
ACCTTTGCTTTTTGTGTTGAGGGGAGGTTGATTTTTGATCCAAGTCTTTA
ATTGTGTGGGTGTGGGTGTTACTCCTCTCAATTAGTTTCGTTTGATTTTA
TGTGTGTGCGTGCATGTTGTTTCTTGCCCTCTCACCTCCTTAAGCACAGC
ACCAAAAAATACATCCTTGTCTCTTTTCAAAAATCGCTCACACCCGTTGC
AGCTTCTTTCCCCCCTCCTCTTCCTCCTCCTTATCCTGCTCCTGCTCCTG
CTCCTTCCGATGCAGATGAAATTCTCGCGATTGCGCCGCCTCAAATGTAA
TCGTCGATGCCTGTGACTCCATCCCCAACCCCTCCCCCTCCCTCTCCCCT
GCAGCCCTTGCAGCATTGGCACTCTCCCTCTCGAGAATCAAGCGATTGAG
AGTCTGAATAACTGGATCGTCGAGGGTATACCTCTTGGTGGACAAAAGCA
GCTCTCTCTCTGTTCTCAACCGATGAGTCTCGTCCAACAAAAGGCGGCTT
TGACTGTCTGCGCCGGCACGATCAAGTGGATGAGGGTCAAGTAACGTCAC
CTCTTCCTCGTCCCCCCCCTCACCCTCCTCGTCATCACCCTCACTCATCA
TCAGACGCATCAGCTGATTATTTTTCTGGTGTCGTCGGCGGTTGGCGGCT
ATTTGCTCAAGCAGGGCTGCTCTCGCCACTCCTGTTACGGTTGCTGCTGC
TTGAGGAGCTTCCCGTGACTGCCCTCCTCCTCCTCCCATCCCGAAGGCGA
TAGGAAGTGGCCCTGGCACCGGCGATAGCCTTCCACTGTCTCCACCACCA
GCAGCACCTCTACCACTAGCAGCACCACCAGCAGAACCACATACAGCACC
AGAGGAAGTGGAATTATGCCCCCACCGAGTGGAGACTCCAAAGTTCTCTT
TATTCTCATTCCGGGGTGGGGAGGAAGAGGTAGGGCTTGCGCGATGCTGT
CGTCGGCTTGGTCCTTCTTCCACTCCGCCTCCTCTTTCTCCTCCTTTATC
ACCACCCTGACCATCCCCCCTTTCCCTCCTCACATCGACCTGATACTGCT
GTTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGTGG
TGCTGCCATCGCCCCTTCTTCCCCCCTCCTCCCTCCCCCGTCGGCATGCC
CCCAAACTGCCTCACAGCGTCCAAGGTCATTTTGATGTCCCGCAGCTCGC
CTCTTTCCCCATCCAGCCGACACGTCCCTCCCTCCTCCGCCACCACGTAT
TTCAGCCGCATCTCATCCAAATGTTTCCGAATATTGACGTTCGTCCTTTT
TTGCTCCCGTTTCAGCGCCCGAGCTACCCGCTGGGCCGCGGCCCTGTACT
GTTCTTTTTCTAGGAAAGCCTGTGTTTTCTCTCCCTTTTCACGCTCTATT
CGGACGAGTAATTCCGCTTTTTCCCCCTTGAGTGTTGCAACCTCCTGTTG
CAATACAGTTGGTGTCGCTTTGCGTGCCTCCCGTCGAAAGCGAGCAAAGT
CCTCCTGGACCTCTTTTATCTTCGCCTCCGCCTCCTTCCTCGCTTGCGTC
ATGCGCGCCAGCTGTCCCTCCAACTCCCTATTCCTCAGCCCCTCTACCTC
CTTCTGATGTTTCCCCTCCTCCCTCAACCTCCGCTGCAAGGCCTGACACT
CCTCCACCTGCTTCTTCGCGCGTGCTTTCAGCTCCTCCTCCCTCCCATCC
ACCGTCCTCTCCCTCTCCTCCACTTTGCCCACCCTCCTCTTCAGCTCCGC
CTCCAACCTCTCAAATTCTGCCCGTCTCTTCACCCAAAACTCCTGCTGCT
CCTTCTTTCTCCTCTCATGCATCCTGTCCAGCATCGACATTCGTTCGGCC
TCTTTGGCTCGTAGCCTCTCGGACCACTCCACCTCGGTCCGATGCCTCCA
ATCCTCAAATTCCAATTTTTTCCTTTCCACATCCAATAGGGTCAATGCAA
GGGGGAAGGAGGGAGGAAGGGTGGATAGGTGGGGTTGTTGTGCTTGTTGT
TGGACCATGTTGACTGCCGCTGTTTCTGCTGATGCTGCTGATGCTGCTGG
TGCCTCAGTTGCTGCCGGTGAGACGGGGTCGGCGGCTCCCAAGTCCTCTA
GCACTAGGACAGCTCGCAAGGACGCCCCGTCTTCGCCACCACTGCCGCTG
CTGCTGGTGTCAATGAGAGGCAAGTACCTATCGAGCACGCGCATTACTAC
AGGAGGAGGAGCAGCAGCAGAGGAAGAGGTGCGTTGCCGGGCATCAAACC
GTCGGCACGCATCATACGACTTAAATACCCTCGGTTTTATCACACTTCGG
AAACTCACCGAGGTATCCTGCATTAATTCCAGCAGAGGAAGCATCACCCG
CCCAATTTCCACTCCTCCTCCTCCTATTCTTCCTCCAGTATCCTTCGCCT
TAACTCTTACTTCAAAAGGATGCCCCTCCGCTACCTCATCCAACCCTTCA
TAACTCCCCGGAAAATCAAACGTACAACACGCACGCATCATCGGCGTCTC
CACCCTGGCCGCAGCCCAGACAGGCGTCGAGACAACAGGTCGATCCAATG
CCGAAGTCTCTCGCTCCCTCCCTCCTGCGCGTGATGCATCGGCAGCTTTA
AGATGCGGATAATGGTACGCAAGGTAAATCTGATGGGCTCGACTCAAACC
AACGACAGCCCGCAAATCTACTGAGAGTCGGAAATTCCGTCGGCCTGCTG
GACGGAGGTGAGCCTCGTCTTCCTCTTGTTGGGCCAGCAGGGAGTCCTCT
CCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCGT
CTCTTCCTCCTCCTCATCTTCCTCTTCCCCCTCCCCTTCCCTTATATTTC
TAACAGTATGTGTCGCTGAGGCAGCATGCGGTATACCAGACAAGCCCTTA
TCGGCCGCTGGAGGGGATATCTGTCGTGCCTGCCTTCCTCTCTCCTCCCC
CATTCCCTCCACTATGGATCCCTCCCCAAAATCCCTCTCCAGTCTGACAC
GTACATCTACCCACACCCCACTCGGCATACCTAGTGGCCCATTCTCCCCC
CATTCCTCCATTTCGAAGCGCCCGAAAGATTCATGCGGAAAGAAGTCTAC
TGTCATGTCTTCGGGTGCCCTTCCCTGGAAGAGTAAGTCATGCAAGTCCA
ATCTCGCCACAGCCACGAACCGTTTGGGTGCACACAAAAAGATTTGCAGC
CATCGATTACTCTCCTCATCCCCGATGCTGCCATTGCTGGTGTCGGCATC
ATCGCGACCCGAGAACCAGGCCGCTAGGTCTGCCCCGCACGCAGCACTAC
GCAAGCGAAAAACGTCCGTGCTCCGCCGTCCGCTTCCACCTTTGACCTCT
TCCTCGAGCGCATACACACGGTCAGTACAGGCCACGGACTTGAACAAGAC
ATACGAGAGCCACATGCCTCCCTCATCAGCCTCAGGCAACCGCTGCAAGC
CTCCCCCGTTCCCACCCCAGCCCACTATGTCGACGGTGAAGAGAAAGTAG
TCCCGCCCGCGTCCAATTGGGAAGGCCGTCTGCTCCTCCAAATCCTCTTC
CTCTGTCTCGTCAGGCGATGCTCGTGATGACATGGCCCTGTTTGCAGCTG
TGGGTGCGGTGAGTGCGCGTTTGATGTAAACCAGGGCAGGCGGGCTGTCT
GTTGCAGCCCTTGCCTCGCCAAACCTACGGCAACAGCGACTTTTCAGTGC
TTCAGTGCTCAGGTAAGGGACATGGACACCTCACGCGGTGTGGAGCAATA
AAGGATCTGAGGCTGTGCAAATGTGTGTTGTATGAAGCGTGAAAAGTGAG
AGTGCCTCTTGCATTTTGTTGGCATGCAATGATGAACGCCGCGTGCGAGA
GAATCTGACGGGAAGGCCTGCCTCCAAGCCCAGCAGCCTGGGCTTAGGGG
AGGAGGGACTGGAGCTGGGGAACTTGGTGCCACGGAGGCTCAACCTCGTG
CACTAATTAAGCAACACGAAGGCCGGTCTGATAGTTAAGGCCAGAGGCAC
ATTTTGATCAGCTTTGCTCAGGCGTGAGCACACTCTCCCACGTAATGACT
TCCACCCCCTCGTCACACACAGCACAGCCAACCCTATCCTGGTGCAACTT
CAGCTTTGTCGCCGCCTTTGTTTCCACCCCGATATCAACCCACCCGCAAC
TGCCAAAATGAGCACCACTGCCAAAAACATCCCGCCCAGAAAGCAGCTCC
GCGCATGCTTGAACCTTATGCGACGTCTACCACCCCACAAGCAGAAGGAC
AACCTCGAGAGTCTGATGCAGCTCGTGTCACCAGAGTTGGGAGAGGAGCT
CGCCGAGTGCGTCGACATCCCTTTGGAAGAAGCCATTGACCCCGAGACGg
tacgtgtggtatgaaagagtgggcggcggggcagtgggcgagtgtggtct
cgcccatttggctggtcgtcgcacaagaaatgagacttgcgcactagaga
ccacacccttgcagcttgaaagcttttttgtcagccaatataaagcctac
cctcgttctgctggcgcaattttaacctcccacctttctcaccaccacat
gctcatcagAATCAACACTATCTTCTTTGCGACTACAATCGTGACGGCGC
GTCGCACCGATCCCCATGGTCCAACAAGTACTTTCCTCCTCCTCCTCTTT
CCTCCACTTTGTATTTCCCTCCTGATTCGTTGCGCGCATTGGAGGTGGAG
GCGAATGCACTCTTTCAGATTTATCGTGAGCTGTACTATGATGGACAAGG
GGTCTCCTCTGTATTTTTCTGGGACTTGCCTGACGAGGACGATCCCAATG
ACAGAGGAGGGGGCAACAACAGCATCAGAGCAGGCGGTGGTGATGGATTT
GCCGGTTGCTTTGCAATCAAAAAGAAGGTAATGGGCACGCGGGCCTTCCG
GGAGGGTACCTGGGACTCGATGCACGTAGTCGAGGTTCAAGCTACAGCAC
GGGGAGCAGGAGCAACAGCAAGCTATAAATTGACAAGCACTGTGCAAATA
TCCTTATTTGTCGATCATCCCGACATTGGGGAGGCTTGCTTGGCGGGGAC
GGTGACGAGGGCGACTGAAGCGACGCACGCAGTGGTGGGCAGCGCAGGGG
GGCACGTTGCGAATATGGGGAGAATGATTGAAGACATGGAGATCTCGGTG
CGAGGTGATTTAGACGTCCTCTACATGCAGCGGACGCGAGATATTGTGAG
TAGCGTGCGCAAGCCACCGCCTCCTCTGGACTGTAGGAGATACGGACAGA
CAGTCTTTCCTTCGTGTGTGGGTGCGTCAGCAGAGCACACTCAATCTTTG
TTTGCCGCTATTGCTAAGCACGCCGCTCTGCGGGGCGATAAAGACGGAGA
TGTGTTCGAAGGATGATAAAATGAAATTGAAATAAAATATTTACATT
back to top

protein sequence of NO05G01790.1

>NO05G01790.1-protein ID=NO05G01790.1-protein|Name=NO05G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MSTTAKNIPPRKQLRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAE
CVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYF
PPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGN
NSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATARGAGAT
ASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANM
GRMIEDMEISVRGDLDVLYMQRTRDIVSSVRKPPPPLDCRRYGQTVFPSC
VGASAEHTQSLFAAIAKHAALRGDKDGDVFEG*
back to top
Synonyms
Publications