NO05G00890, NO05G00890 (gene) Nannochloropsis oceanica

Overview
NameNO05G00890
Unique NameNO05G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3081
Alignment locationchr5:274769..277849 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:274769..277849 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
[Close]
BLAST of NO05G00890 vs. NCBI_GenBank
Match: ETM43601.1 (hypothetical protein L914_10991 [Phytophthora parasitica])

HSP 1 Score: 66.2 bits (160), Expect = 4.800e-7
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 0 
Query:  627 EVRVNAAAILGCLCPPSSSFSLVSSVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL 746
            E R+NA  ++GC+    SS +   +VG  L  + L ++++   A  LNAI D++  DD+E D  F   L FL+ L+    A + K K E  +  +  V HVKET LN  RFIKYK+K L
Sbjct:  542 ESRLNAIGMIGCVGKRCSSPAEKEAVGRAL-VSRLDDSNLEVVAETLNAIFDVY--DDEEFDDTFCA-LNFLSALERTSSALKSKLKAEQKQLDRALVAHVKETRLNLLRFIKYKKKHL 656
[Close]
BLAST of NO05G00890 vs. NCBI_GenBank
Match: ETP41546.1 (hypothetical protein F442_11358 [Phytophthora parasitica P10297])

HSP 1 Score: 66.2 bits (160), Expect = 4.800e-7
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 0 
Query:  627 EVRVNAAAILGCLCPPSSSFSLVSSVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL 746
            E R+NA  ++GC+    SS +   +VG  L  + L ++++   A  LNAI D++  DD+E D  F   L FL+ L+    A + K K E  +  +  V HVKET LN  RFIKYK+K L
Sbjct:  542 ESRLNAIGMIGCVGKRCSSPAEKEAVGRAL-VSRLDDSNLEVVAETLNAIFDVY--DDEEFDDTFCA-LNFLSALERTSSALKSKLKAEQKQLDRALVAHVKETRLNLLRFIKYKKKHL 656
[Close]
BLAST of NO05G00890 vs. NCBI_GenBank
Match: XP_012205737.1 (hypothetical protein SPRG_10784 [Saprolegnia parasitica CBS 223.65] >KDO23589.1 hypothetical protein SPRG_10784 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 66.2 bits (160), Expect = 4.800e-7
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 0 
Query:  627 EVRVNAAAILGCLCPPSSSFSLVSSVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEK 744
            E R  A  +LG L     S +    +G  L   LL++T +     VLNA+ D++S  D++ D +F + L FL  L+ V    + K K EA    +D VGH KET LN  RFIKYK++
Sbjct:  528 EARTAAIRVLGTLGKKPHSLAENQVLGQCL-GTLLSDTDLQVVCEVLNALFDIYS--DEQYDEVFFR-LNFLASLEHVSAGMKAKIKAEAKTLDRDLVGHAKETRLNLLRFIKYKKQ 640
[Close]
BLAST of NO05G00890 vs. NCBI_GenBank
Match: ETK83723.1 (hypothetical protein L915_11158 [Phytophthora parasitica] >ETL37139.1 hypothetical protein L916_11054 [Phytophthora parasitica] >ETP13468.1 hypothetical protein F441_11389 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.5 bits (158), Expect = 8.200e-7
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 0 
Query:  627 EVRVNAAAILGCLCPPSSSFSLVSSVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL 746
            E R+NA  ++GC+    SS +   +VG  L  + L ++ +   A  LNAI D++  DD+E D  F   L FL+ L+    A + K K E  +  +  V HVKET LN  RFIKYK+K L
Sbjct:  542 ESRLNAIGMIGCVGKRCSSPAEKEAVGRAL-VSRLDDSSLEVVAETLNAIFDVY--DDEEFDDTFCA-LNFLSALERTSSALKSKLKAEQKQLDRALVAHVKETRLNLLRFIKYKKKHL 656
[Close]
BLAST of NO05G00890 vs. NCBI_GenBank
Match: XP_008907511.1 (hypothetical protein PPTG_13531 [Phytophthora parasitica INRA-310] >ETN07135.1 hypothetical protein PPTG_13531 [Phytophthora parasitica INRA-310])

HSP 1 Score: 65.5 bits (158), Expect = 8.200e-7
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 0 
Query:  627 EVRVNAAAILGCLCPPSSSFSLVSSVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL 746
            E R+NA  ++GC+    SS +   +VG  L  + L ++ +   A  LNAI D++  DD+E D  F   L FL+ L+    A + K K E  +  +  V HVKET LN  RFIKYK+K L
Sbjct:  542 ESRLNAIGMIGCVGKRCSSPAEKEAVGRAL-VSRLDDSSLEVVAETLNAIFDVY--DDEEFDDTFCA-LNFLSALERTSSALKSKLKAEQKQLDRALVAHVKETRLNLLRFIKYKKKHL 656
[Close]
BLAST of NO05G00890 vs. NCBI_GenBank
Match: ETO72328.1 (hypothetical protein F444_11535 [Phytophthora parasitica P1976] >KUG01983.1 HEAT repeat-containing protein 3 [Phytophthora nicotianae])

HSP 1 Score: 65.5 bits (158), Expect = 8.200e-7
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 0 
Query:  627 EVRVNAAAILGCLCPPSSSFSLVSSVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL 746
            E R+NA  ++GC+    SS +   +VG  L  + L ++ +   A  LNAI D++  DD+E D  F   L FL+ L+    A + K K E  +  +  V HVKET LN  RFIKYK+K L
Sbjct:  542 ESRLNAIGMIGCVGKRCSSPAEKEAVGRAL-VSRLDDSSLEVVAETLNAIFDVY--DDEEFDDTFCA-LNFLSALERTSSALKSKLKAEQKQLDRALVAHVKETRLNLLRFIKYKKKHL 656
[Close]
BLAST of NO05G00890 vs. NCBI_GenBank
Match: XP_008871845.1 (hypothetical protein H310_08023 [Aphanomyces invadans] >ETV99289.1 hypothetical protein H310_08023 [Aphanomyces invadans])

HSP 1 Score: 65.5 bits (158), Expect = 8.200e-7
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 0 
Query:  621 RTSPYFEVRVNAAAILGCLCPPSSSFSLVSSVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEK 744
            + SP  E R  A  ++G L     S    + V AT    +L +T +     VLNA+ D++S  D++ D +F + + FLT L+ V    + K K EA    ++ + H KET LN  RFIKYK++
Sbjct:  540 QASPSVEARSCAVRLIGTLGKKPHSLP-ENKVLATCLSTVLRDTDLAVVCEVLNALFDIYS--DEQYDAVFHE-VNFLTALEHVSAGMKSKIKSEAKSLDRELIAHAKETRLNLLRFIKYKKQ 658
The following BLAST results are available for this feature:
BLAST of NO05G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
ETM43601.14.800e-739.50hypothetical protein L914_10991 [Phytophthora para... [more]
ETP41546.14.800e-739.50hypothetical protein F442_11358 [Phytophthora para... [more]
XP_012205737.14.800e-738.46hypothetical protein SPRG_10784 [Saprolegnia paras... [more]
ETK83723.18.200e-739.50hypothetical protein L915_11158 [Phytophthora para... [more]
XP_008907511.18.200e-739.50hypothetical protein PPTG_13531 [Phytophthora para... [more]
ETO72328.18.200e-739.50hypothetical protein F444_11535 [Phytophthora para... [more]
XP_008871845.18.200e-734.96hypothetical protein H310_08023 [Aphanomyces invad... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL084nonsL084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR122ngnoR122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003777NSK003777Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00890.1NO05G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583674gene_2880Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g16gene2279Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00890.1NO05G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00890 ID=NO05G00890|Name=NO05G00890|organism=Nannochloropsis oceanica|type=gene|length=3081bp
CATCAGGGCGAAGGCTAGCCATGGGCAAGGCGAAAAAAGCGCGGGCCTTA
CGCAACGCCCGGCACGACCCTTTGGGGTTGGGTGGCTCCCCGGCTGCCGC
CGCACGAGGGGCTACCATGAGTTCCCCTGCAGCTGGCCGCGCGTGCATGG
GACAAAAGCAACAATATAAGGCACAAAAGCTCTTAGAAGATCTGCGGAGC
CCAGATTTGATACGGAAAGAAGCAGCCGTGATGGCCATGGCTCAGTTGCT
GGCTGTGGGGGATAGTCCAGAGGATGGCGAGGAGGAGGAAGAGGATGAGA
AAGGGATGGATGGCACAGGTGCAGGCGGAAGCGCGGGCAGCAGCAAAAAT
AAAAGTACCAGTCGGTTCCGGGCCTTGATCCACAAGTTGGTGGATGGTGG
CGCGGTGCCTTTGTTGATGGAGCGGATGTTTGATACGTCCTCTGCGGTGA
CGCTTCATGCGGCGGGGGCGTTGCGgtacgtacacgcgcatggataaagg
gttggagacattagggggaaaagagtattgctgtaaattttgccgaaaaa
aatctgtgtttgtgtatgcgtgagtcaaggatgtaacaagatatttgcta
ctcttgaagcgtctcctcggagcccttctgatgacatcttatccaccaag
atcgctgagaccacacacaagcacgcactccacccttcgttttctttgtt
atttcctccgccccctctccctacagccagtccctgattcacccactcac
atctactcacacccctccctccctccctcccttcctctctccctccttcc
tacagCAACATGGCCTCCCTCCACGACCCCCGCCTAGCCACCCAAATGAT
CAAAGAAGACGTGTTCACCGCCCTCCTCGGCCTGCTCGACAAAGTAGGGC
AGGGTGGGTTTGAGGCAGCGCCCCTGATCACACAGATATTGGGGACCATG
GCGGGATTATGTGAAACGAGCGAGGTGGCAGGACAGGTGCTGTCGCGACA
CCAAGGACTCGAGGCATTGTTGGATGTGATGGGGACGTACGTGGAGGAGA
TGGAAAGGGAGGGAAGGAAGGATGGCGAGGTGGAGGAGGGGGAAGGGGAG
GAGGAGGAAGTAGAAGAGGAGGAGCAGGGGGGGGGGAGGACATGGTGGTG
GAGGAGGGGGCAAGGAGCAGAGGCAAGGGGAGGGGTCGAAAGAGAGAAAG
CAGCAAGAAAATCACACACCTTTGCCCTTCCGgtaccgccatgaccaagc
aagacagaatcaaagcagcacaagcaatcgtggccttgggtgctcaaact
ctccacgccgccacccgcggcaactaccccctcgtcgaccagctttgccg
acacccagtcatcctccccttcctcacctccctcctctcctcccatcccc
ttttcccctcgttcccccctgccctcactcccgccgcccgcctccatctt
gccggatgcttggcccatgtgtaccttgtcctcctccctgggcgtttcac
ggaccacaagaacaaacccttccctttcttgcctcagCCGGAGCAGCTGC
TGATGATGGTGCTAAAGGACGGAGTACGGGAGGGCTTAGAGTGGGAGGCC
GGGTTACTAGGAGCTGTGGTGGCTGATGTGGAACGAGTGAGAGACGCCAA
GGCCGCAGTTGAGAGGGAGAAGAAGGCGAGGAGGAAGGAGGGAGAGGAGG
AGGAAGGAGATGGGGGACAGGAGGAGGAAGGGGAAAAGAAGGGAGAGCAG
AGGAAAGGAGATGAAGAAATGGATACGGAAGAAGTAGCAACCGCCGGAAG
GGGGCGAGGGGAAGGGGGAGGTGCCGAGGGAGGGAGGGGGGGGAGGCGCG
ACTTACGGATGGCACGGAGGGGGGCTCGGAAGGAATTGGAAGAGGCTCAA
GCTTCTCTAGCAGCAGCAGAGGAAGAGTGGGAGGAGAAGGTGGTGATCAC
TCTCAGTCTTGCATTGGATGTAGTGGCTACCTTGGTGGGGGAGGGGGGAG
GGGGGGACGAGAATGACGACGACGACGAGGAGGAGGAGGAGGAGGAGTGG
GATTCGGACCAGGACGAGGATCGAATGGAGGCCATGGCGGTAGAGATGAT
AACGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGg
tatcggtgacacgacagcggcttttctccttgcttgtgagcacgggtgtg
ctgtctcgtacattccacgtggcgcagtcactctccaagtgcttgctaca
agctttggcctccctccctcccttcatccccccccctcctctttctcctc
ctccaccacttctacgagcactacccccacctccgagGCAGGGAATGAGG
ACGAGGAAGCAAAGAAGATGAGGACTTTGGCTATTATCCCCATCCCTCTG
ATTAGACAAGTGTTGGAATTGAGGTCACGGGCGCTGCTGGTGTTGGGGGG
ACTGCTCACAGAGATGCCTTCATCGATGATTGAAACGGAGGGAGCGGCGG
CGTGGACGGCCTTGCTGGAGATGGGGGAGGAAGGAATGGAGGAGGAGAGA
AGGGGCCATGCTCCGTGGTACTGCCGAGGGGAGGAGCCATGCCTTGGGCT
CCTGACTGGTGTGATGTGTGCCTTTGTCAGGAGGAGGGGGCAGGGAGGGA
CGGAAGGAGGACGGGCAGGCGGAAAAGAGGTTGAGTTGCTGGCACGGATG
GTGAGGACGTCCCCCTATTTTGAGGTGAGGGTTAATGCGGCTGCGATTCT
GGGTTGTCTATGCCCTCCCTCTTCCTCGTTCTCCCTCGTGTCCTCGGTAG
GAGCAACCTTAAAGGAGGCATTGCTGACCGAGACGCACGTGCTGGGAGAA
GCAGCTGTATTGAATGCGATCATGGACTTGTTTTCTGATGACGACCAAGA
GAGGGATCGAATCTTCCAGAAACATCTAGGATTCTTGACGGTGTTGAAGG
AGGTGCTGCCTGCGTTTCGGTTGAAGTGTAAAGTGGAGGCGGGGAAGCAC
GGGAAAGATGCTGTTGGGCACGTGAAAGAGACGGCATTGAATACGGCCCG
ATTCATCAAGTACAAGGAAAAGACGCTTTAG
back to top

protein sequence of NO05G00890.1

>NO05G00890.1-protein ID=NO05G00890.1-protein|Name=NO05G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp
MGKAKKARALRNARHDPLGLGGSPAAAARGATMSSPAAGRACMGQKQQYK
AQKLLEDLRSPDLIRKEAAVMAMAQLLAVGDSPEDGEEEEEDEKGMDGTG
AGGSAGSSKNKSTSRFRALIHKLVDGGAVPLLMERMFDTSSAVTLHAAGA
LRNMASLHDPRLATQMIKEDVFTALLGLLDKVGQGGFEAAPLITQILGTM
AGLCETSEVAGQVLSRHQGLEALLDVMGTYVEEMEREGRKDGEVEEGEGE
EEEVEEEEQGGGRTWWWRRGQGAEARGGVEREKAARKSHTFALPPEQLLM
MVLKDGVREGLEWEAGLLGAVVADVERVRDAKAAVEREKKARRKEGEEEE
GDGGQEEEGEKKGEQRKGDEEMDTEEVATAGRGRGEGGGAEGGRGGRRDL
RMARRGARKELEEAQASLAAAEEEWEEKVVITLSLALDVVATLVGEGGGG
DENDDDDEEEEEEEWDSDQDEDRMEAMAVEMITAGREGGREGGREGRKAG
NEDEEAKKMRTLAIIPIPLIRQVLELRSRALLVLGGLLTEMPSSMIETEG
AAAWTALLEMGEEGMEEERRGHAPWYCRGEEPCLGLLTGVMCAFVRRRGQ
GGTEGGRAGGKEVELLARMVRTSPYFEVRVNAAAILGCLCPPSSSFSLVS
SVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTV
LKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL*
back to top
Synonyms
Publications