NO05G00060, NO05G00060 (gene) Nannochloropsis oceanica

Overview
NameNO05G00060
Unique NameNO05G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length564
Alignment locationchr5:15206..15769 +

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Properties
Property NameValue
DescriptionDynein light chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:15206..15769 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: POM80560.1 (Dynein light chain [Phytophthora palmivora var. palmivora])

HSP 1 Score: 194.9 bits (494), Expect = 1.800e-46
Identity = 93/148 (62.84%), Postives = 118/148 (79.73%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQKPT++ELF MIAEVD + SG ++F E L+VIE QK++A  FDDE D +DAFVACGG  DK GHV+R+ LV++IKKDFGL IDI+ +++++DTDGSGEIEY+EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDKDGSGTIDKYELSKVLEAMGQKPTDEELFQMIAEVDNDHSGEIEFAEFLQVIEAQKLRAAQFDDESDFIDAFVACGGNPDKTGHVERKMLVQLIKKDFGLPIDIDRMLDELDTDGSGEIEYEEFKALLS 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_008605381.1 (hypothetical protein SDRG_01625 [Saprolegnia diclina VS20] >XP_012194262.1 hypothetical protein SPRG_00648 [Saprolegnia parasitica CBS 223.65] >EQC41667.1 hypothetical protein SDRG_01625 [Saprolegnia diclina VS20] >KDO34585.1 hypothetical protein SPRG_00648 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 194.5 bits (493), Expect = 2.300e-46
Identity = 94/148 (63.51%), Postives = 119/148 (80.41%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQ+PTE+ELF MI+EVDE+ SG ++F E L+VIE QK++AL +DDE D VDAFVACGG  DK GHV+R  LV++IKKDFGL IDI+++++++DTDGSGEIEY EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDRDGSGTIDKYELAKVLEAMGQRPTEEELFQMISEVDEDHSGEIEFSEFLQVIEQQKLRALEYDDESDFVDAFVACGGGPDKQGHVERRVLVQLIKKDFGLPIDIDKMLDELDTDGSGEIEYDEFKALLS 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: OWZ18659.1 (Dynein light chain [Phytophthora megakarya])

HSP 1 Score: 194.1 bits (492), Expect = 3.000e-46
Identity = 93/148 (62.84%), Postives = 117/148 (79.05%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQKPT++ELF MIAEVD + SG ++F E L+VIE QK++A  FDDE D +DAFVACGG  DK GHV+R+ LV++IKKDFGL IDI+ +++++DTDGSGEIEY EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDKDGSGTIDKYELSKVLEAMGQKPTDEELFQMIAEVDNDHSGEIEFAEFLQVIEAQKLRAAQFDDESDFIDAFVACGGNPDKTGHVERKMLVQLIKKDFGLPIDIDRMLDELDTDGSGEIEYDEFKALLS 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_008897387.1 (hypothetical protein PPTG_05555 [Phytophthora parasitica INRA-310] >ETI33884.1 hypothetical protein F443_19484 [Phytophthora parasitica P1569] >ETK74255.1 hypothetical protein L915_18903 [Phytophthora parasitica] >ETL27684.1 hypothetical protein L916_18801 [Phytophthora parasitica] >ETL80923.1 hypothetical protein L917_18625 [Phytophthora parasitica] >ETM34117.1 hypothetical protein L914_18723 [Phytophthora parasitica] >ETN17881.1 hypothetical protein PPTG_05555 [Phytophthora parasitica INRA-310] >ETO62683.1 hypothetical protein F444_19434 [Phytophthora parasitica P1976] >ETP03778.1 hypothetical protein F441_19307 [Phytophthora parasitica CJ01A1] >ETP31931.1 hypothetical protein F442_19255 [Phytophthora parasitica P10297] >KUF93861.1 hypothetical protein AM588_10005789 [Phytophthora nicotianae])

HSP 1 Score: 193.7 bits (491), Expect = 4.000e-46
Identity = 93/148 (62.84%), Postives = 117/148 (79.05%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQKPT++ELF MIAEVD + SG ++F E L+VIE QK++A  FDDE D +DAFVACGG  DK GHV+R+ LV++IKKDFGL IDI+ +++++DTDGSGEIEY EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDKDGSGTIDKYELSKVLEAMGQKPTDEELFQMIAEVDNDHSGEIEFAEFLQVIEAQKLRAAQFDDESDFIDAFVACGGNPDKSGHVERKMLVQLIKKDFGLPIDIDRMLDELDTDGSGEIEYDEFKALLS 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_002907680.1 (dynein 18 kDa light chain [Phytophthora infestans T30-4] >EEY64244.1 dynein 18 kDa light chain [Phytophthora infestans T30-4])

HSP 1 Score: 193.4 bits (490), Expect = 5.200e-46
Identity = 93/148 (62.84%), Postives = 117/148 (79.05%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQKPT++ELF MIAEVD + SG ++F E L+VIE QK++A  FDDE D +DAFVACGG  DK GHV+R+ LV++IKKDFGL IDI+ +++++DTDGSGEIEY EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDKDGSGTIDKYELSKVLEAMGQKPTDEELFQMIAEVDNDHSGEIEFAEFLQVIEAQKLRAAQFDDESDFIDAFVACGGSPDKSGHVERKMLVQLIKKDFGLPIDIDRMLDELDTDGSGEIEYDEFKALLS 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_008875908.1 (hypothetical protein H310_11129 [Aphanomyces invadans] >ETV95715.1 hypothetical protein H310_11129 [Aphanomyces invadans])

HSP 1 Score: 192.6 bits (488), Expect = 8.800e-46
Identity = 94/148 (63.51%), Postives = 120/148 (81.08%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVDE+MSG +DF E L+VI+ QK +A  ++DE DM+DAFVACGG+ DK G V+R+TLV+IIK DFGL I+IE++INK+D D SGEIE+ EFK +L+
Sbjct:    1 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLEAMGQQPTEEELFQMISEVDEDMSGAIDFAEFLQVIDNQKDRAALYNDESDMIDAFVACGGKPDKSGVVRRDTLVKIIKVDFGLTINIEDMINKLDVDQSGEIEFDEFKAILT 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: CCI45691.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 192.2 bits (487), Expect = 1.200e-45
Identity = 92/148 (62.16%), Postives = 119/148 (80.41%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVD +MSG +DF E L+VI+ QK +A  +DD+ DM+DAFVACGG  DK G V++E L++IIK+DFGL I+IEE+IN +D DGSG+IEY+EFK +L+
Sbjct:    1 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLQAMGQQPTEEELFQMISEVDNDMSGAIDFAEFLQVIDNQKDRAAMYDDDSDMIDAFVACGGSPDKSGFVRKEALIKIIKQDFGLTINIEEIINTLDVDGSGKIEYKEFKAILT 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: OQR93078.1 (dynein 18 kDa light chain [Achlya hypogyna])

HSP 1 Score: 190.7 bits (483), Expect = 3.400e-45
Identity = 92/148 (62.16%), Postives = 118/148 (79.73%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQ+PTE+ELF MI+EVDE+ SG ++F E L+VIE QK++A+ +DDE D VDAFVACGG   K GHV+R  LV++IKKDFGL IDI+++++++DTDGSGEIEY EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDKDGSGTIDKYELAKVLEAMGQRPTEEELFQMISEVDEDHSGEIEFAEFLQVIEQQKLRAMEYDDESDFVDAFVACGGGPGKEGHVERRVLVQLIKKDFGLPIDIDKMLDELDTDGSGEIEYDEFKALLS 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: CCA18481.1 (dynein light chain putative [Albugo laibachii Nc14])

HSP 1 Score: 190.3 bits (482), Expect = 4.400e-45
Identity = 90/148 (60.81%), Postives = 121/148 (81.76%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVD +MSG +DF E L+VI+ QK +A  +DD+ DM+DAFVACGG +DK G V++E L++IIK+DFGL I+IEE+INK+D DG+G+I+++EFK +L+
Sbjct:   28 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLQAMGQQPTEEELFQMISEVDNDMSGAIDFAEFLQVIDNQKDRAALYDDDSDMIDAFVACGGSSDKSGFVRKEGLIKIIKQDFGLTINIEEMINKLDVDGNGKIKFKEFKAILT 175
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_009841674.1 (hypothetical protein H257_15315 [Aphanomyces astaci] >ETV68720.1 hypothetical protein H257_15315 [Aphanomyces astaci])

HSP 1 Score: 189.9 bits (481), Expect = 5.700e-45
Identity = 91/148 (61.49%), Postives = 117/148 (79.05%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQKP+E+ELF MI+EVD++ SG ++F E LRVIE QK +A+ +DDE D +DA+VACGG  DK GHV+R  LV +IKKDFGL IDI+++++++DTDGSGEIEY EFK LLS
Sbjct:    1 MLLTQEEIDACRDSFVHFDKDGSGTIDKYELAKVLEAMGQKPSEEELFQMISEVDDDHSGEIEFPEFLRVIETQKRRAMEYDDESDFIDAYVACGGGPDKTGHVERRVLVHLIKKDFGLPIDIDKMLDELDTDGSGEIEYDEFKALLS 148
The following BLAST results are available for this feature:
BLAST of NO05G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
POM80560.11.800e-4662.84Dynein light chain [Phytophthora palmivora var. pa... [more]
XP_008605381.12.300e-4663.51hypothetical protein SDRG_01625 [Saprolegnia dicli... [more]
OWZ18659.13.000e-4662.84Dynein light chain [Phytophthora megakarya][more]
XP_008897387.14.000e-4662.84hypothetical protein PPTG_05555 [Phytophthora para... [more]
XP_002907680.15.200e-4662.84dynein 18 kDa light chain [Phytophthora infestans ... [more]
XP_008875908.18.800e-4663.51hypothetical protein H310_11129 [Aphanomyces invad... [more]
CCI45691.11.200e-4562.16unnamed protein product [Albugo candida][more]
OQR93078.13.400e-4562.16dynein 18 kDa light chain [Achlya hypogyna][more]
CCA18481.14.400e-4560.81dynein light chain putative [Albugo laibachii Nc14... [more]
XP_009841674.15.700e-4561.49hypothetical protein H257_15315 [Aphanomyces astac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003918NSK003918Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00060.1NO05G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00060.1NO05G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00060 ID=NO05G00060|Name=NO05G00060|organism=Nannochloropsis oceanica|type=gene|length=564bp
ATGGTCTTGACCCAAGAAGAGATCGACGCCTGCCGGGCGGCGTTTCAAGC
CTTTGACGCGGATAACACGGGCACTTTAGACGTGGCGGCGTTGCGTGGGG
TGCTTGGGTTTTTGGGACAAAAGCCCACTGAGGACGAATTATTTATGATG
ATTGCCGAAGTCGACGAAGAGATGAGTGGCATGCTCGACTTTGGGGAGCT
CTTGCGAGTAATTGAGGTGCAAAAGATGAAAGCTTTGGCGTTTGACGACG
AGGGCGACATGGTCGATGCCTTTGTGGCCTGTGGGGGCCGAGCAGACAAG
CTGGGGCACGTAAAACGGGAAACGCTGGTGCGCATTATCAAGAAGGATTT
CGGCTTGATGATTGATATCGAGGAATTGATTAATAAAGTGGACACGGACG
Ggtgcgtttcttgtggatgggaatggtgggatgagtaggagggcggacgg
atgagatctacatgtcttattttccattttttccccttcttatttcccac
attctaaccaatacccagGTCAGGCGAAATTGAGTACCAGGAGTTTAAGA
TGCTGCTCTCTTAG
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protein sequence of NO05G00060.1

>NO05G00060.1-protein ID=NO05G00060.1-protein|Name=NO05G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMM
IAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADK
LGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS*
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Synonyms
Publications