NO05G00060, NO05G00060 (gene) Nannochloropsis oceanica

Overview
NameNO05G00060
Unique NameNO05G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length564
Alignment locationchr5:15206..15769 +

Link to JBrowse

Properties
Property NameValue
DescriptionDynein light chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:15206..15769 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: CBN80105.1 (dynein light chain [Ectocarpus siliculosus])

HSP 1 Score: 204.1 bits (518), Expect = 2.900e-49
Identity = 103/148 (69.59%), Postives = 118/148 (79.73%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVLTQEEID CR AF AFD D +G +DV  LR VL  +GQKPTE+ELF MI+EVD+ MSG +DF E L+VIE QK +A  FDDE DM+DAFVACGGR DK GHVKR  LV+IIK DFGL I+IE+LINK+D DGSGEIE+ EFK LLS
Sbjct:   29 MVLTQEEIDGCRDAFLAFDKDRSGNIDVWELRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVIENQKTRAQNFDDETDMIDAFVACGGRMDKTGHVKRGALVKIIKVDFGLTINIEDLINKIDADGSGEIEFPEFKALLS 176
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_002289492.1 (EF hand-containing protein [Thalassiosira pseudonana CCMP1335] >EED93029.1 EF hand-containing protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 203.4 bits (516), Expect = 5.000e-49
Identity = 99/147 (67.35%), Postives = 118/147 (80.27%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLL 148
            MVL+QE+ID CR AF AFD D +GT+DV  LR VL  +GQ PTEDELF MI+EVDE MSG +DFGE L+V+E  K +A   DDE D++DAFVACGG+ DK GHVKRETL+ IIK DFGL IDIE+LINK+DTDGSGEIE+ EF ++L
Sbjct:    1 MVLSQEDIDGCREAFLAFDKDRSGTIDVWELRQVLEAMGQAPTEDELFQMISEVDENMSGSIDFGEFLKVVESHKKRAENLDDENDLLDAFVACGGQPDKGGHVKRETLISIIKHDFGLTIDIEDLINKIDTDGSGEIEFDEFSLML 147
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: OWZ06657.1 (Dynein light chain [Phytophthora megakarya])

HSP 1 Score: 201.1 bits (510), Expect = 2.500e-48
Identity = 98/148 (66.22%), Postives = 122/148 (82.43%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVDE+MSG +DF E L+VI+ QK +A  F+D+ DM+DAFVACGG+ADK G V++ETLVRIIK DFGL I+IEE+INK+D DGSGEIE+ EFK +L+
Sbjct:    1 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLEAMGQQPTEEELFQMISEVDEDMSGAIDFAEFLQVIDNQKDRAAMFEDDSDMIDAFVACGGKADKSGFVRKETLVRIIKGDFGLTINIEEMINKLDVDGSGEIEFDEFKAILT 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_008890391.1 (hypothetical protein PPTG_00695 [Phytophthora parasitica INRA-310] >XP_009523341.1 hypothetical protein PHYSODRAFT_313210 [Phytophthora sojae] >EGZ20624.1 hypothetical protein PHYSODRAFT_313210 [Phytophthora sojae] >ETI56747.1 hypothetical protein F443_00816 [Phytophthora parasitica P1569] >ETK96532.1 hypothetical protein L915_00767 [Phytophthora parasitica] >ETL49884.1 hypothetical protein L916_00760 [Phytophthora parasitica] >ETM02968.1 hypothetical protein L917_00731 [Phytophthora parasitica] >ETM56223.1 hypothetical protein L914_00747 [Phytophthora parasitica] >ETN24316.1 hypothetical protein PPTG_00695 [Phytophthora parasitica INRA-310] >ETO85479.1 hypothetical protein F444_00836 [Phytophthora parasitica P1976] >ETP26517.1 hypothetical protein F441_00809 [Phytophthora parasitica CJ01A1] >ETP54553.1 hypothetical protein F442_00779 [Phytophthora parasitica P10297] >POM68000.1 Dynein 18 kDa light chain [Phytophthora palmivora var. palmivora])

HSP 1 Score: 198.0 bits (502), Expect = 2.100e-47
Identity = 96/148 (64.86%), Postives = 121/148 (81.76%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVDE+MSG +DF E L+VI+ QK +A  F+D+ DM+DAFVACGG+ DK G V++ETLV+IIK DFGL I+IEE+INK+D DGSGEIE+ EFK +L+
Sbjct:    1 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLEAMGQQPTEEELFQMISEVDEDMSGAIDFAEFLQVIDNQKDRAAMFEDDSDMIDAFVACGGKPDKSGFVRKETLVKIIKGDFGLTINIEEMINKLDVDGSGEIEFDEFKAILT 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_009517103.1 (hypothetical protein PHYSODRAFT_353690 [Phytophthora sojae] >EGZ29828.1 hypothetical protein PHYSODRAFT_353690 [Phytophthora sojae])

HSP 1 Score: 196.8 bits (499), Expect = 4.700e-47
Identity = 94/148 (63.51%), Postives = 119/148 (80.41%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQKPT++ELF MIAEVD + SG ++F E L+VIE QK++A  FDDE D +DAFVACGG ADK GHV+R+ LV++IKKDFGL IDI+ +++++DTDGSGEIEY+EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDKDGSGTIDKYELSKVLEAMGQKPTDEELFQMIAEVDNDHSGEIEFAEFLQVIEAQKLRAAQFDDESDFIDAFVACGGNADKTGHVERKMLVQLIKKDFGLPIDIDRMLDELDTDGSGEIEYEEFKALLS 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_009037662.1 (hypothetical protein AURANDRAFT_7786, partial [Aureococcus anophagefferens] >EGB07667.1 hypothetical protein AURANDRAFT_7786, partial [Aureococcus anophagefferens])

HSP 1 Score: 196.4 bits (498), Expect = 6.100e-47
Identity = 99/138 (71.74%), Postives = 113/138 (81.88%), Query Frame = 0 
Query:   11 CRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            CR AF AFD D +GT+DV  LR VL  +GQKPTE+ELF MI+EVDE MSG +DF E L+VIE QK +A  FDDE DM+DAFVACGGR DK GHV+RETLV+IIK DFGL IDIEELINK+DTD SGEIE++EFK LLS
Sbjct:    1 CRDAFLAFDKDRSGTIDVWELRQVLEAMGQKPTEEELFQMISEVDENMSGSIDFAEFLKVIENQKDRAENFDDENDMIDAFVACGGRPDKHGHVRRETLVKIIKHDFGLTIDIEELINKIDTDLSGEIEFEEFKALLS 138
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: OQS03242.1 (hypothetical protein THRCLA_04466 [Thraustotheca clavata])

HSP 1 Score: 195.7 bits (496), Expect = 1.000e-46
Identity = 96/148 (64.86%), Postives = 121/148 (81.76%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVD++MSG +DF E L+VI+ QK +A  ++DE DM+DAFVACGG+ DK G VKRETLV+IIK DFGL I+IEE+INK+D D SGEIE++EFK +L+
Sbjct: 2881 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLEAMGQQPTEEELFQMISEVDDDMSGAIDFAEFLQVIDNQKDRAAMYNDESDMIDAFVACGGKPDKTGVVKRETLVKIIKIDFGLTINIEEMINKLDVDQSGEIEFEEFKAILT 3028
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_009828937.1 (hypothetical protein H257_05695 [Aphanomyces astaci] >ETV81079.1 hypothetical protein H257_05695 [Aphanomyces astaci])

HSP 1 Score: 195.3 bits (495), Expect = 1.400e-46
Identity = 96/148 (64.86%), Postives = 121/148 (81.76%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVDE+MSG +DF E L+VI+ QK +A  ++DE DM+DAFVACGG+ DK G VKR+TLV+IIK DFGL I+IEE+INK+D D SGEIE++EFK +L+
Sbjct:    1 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLEAMGQQPTEEELFQMISEVDEDMSGAIDFAEFLQVIDNQKDRAALYNDESDMIDAFVACGGKPDKSGVVKRDTLVKIIKIDFGLTINIEEMINKLDVDQSGEIEFEEFKAILT 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: XP_008608166.1 (hypothetical protein SDRG_04278 [Saprolegnia diclina VS20] >XP_012201598.1 hypothetical protein SPRG_20362 [Saprolegnia parasitica CBS 223.65] >EQC38574.1 hypothetical protein SDRG_04278 [Saprolegnia diclina VS20] >KDO27685.1 hypothetical protein SPRG_20362 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 194.9 bits (494), Expect = 1.800e-46
Identity = 96/148 (64.86%), Postives = 120/148 (81.08%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            MVL Q+EIDACR AF AFD D +GT+DV  LR VL  +GQ+PTE+ELF MI+EVDE+MSG +DF E L+VI+ QK +A  ++DE DM+DAFVACGG+ DK G VKR+TLV+IIK DFGL I+IEE+INK+D D SGEIE+ EFK +L+
Sbjct:    1 MVLAQDEIDACREAFLAFDKDRSGTIDVWELRQVLEAMGQQPTEEELFQMISEVDEDMSGAIDFAEFLQVIDNQKDRAAMYNDESDMIDAFVACGGKPDKTGVVKRDTLVKIIKVDFGLTINIEEMINKLDVDQSGEIEFAEFKAILT 148
[Close]
BLAST of NO05G00060 vs. NCBI_GenBank
Match: OQR96791.1 (dynein 18 kDa light chain [Thraustotheca clavata])

HSP 1 Score: 194.9 bits (494), Expect = 1.800e-46
Identity = 94/148 (63.51%), Postives = 119/148 (80.41%), Query Frame = 0 
Query:    1 MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMMIAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADKLGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS 149
            M+LTQEEIDACR +F  FD D +GT+D   L  VL  +GQKPTE+ELF MI+EVDE+ SG ++F E L+VIE QK++AL +DDE D +DAFVACGG  DK GHV+R  LV++IKKDFGL IDI+++++++DTDGSGEIEY EFK LLS
Sbjct:    1 MILTQEEIDACRESFVHFDKDGSGTIDKYELAKVLEAMGQKPTEEELFQMISEVDEDHSGEIEFSEFLQVIEQQKLRALEYDDESDFIDAFVACGGGPDKEGHVERRVLVQLIKKDFGLPIDIDKMLDELDTDGSGEIEYDEFKALLS 148
The following BLAST results are available for this feature:
BLAST of NO05G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN80105.12.900e-4969.59dynein light chain [Ectocarpus siliculosus][more]
XP_002289492.15.000e-4967.35EF hand-containing protein [Thalassiosira pseudona... [more]
OWZ06657.12.500e-4866.22Dynein light chain [Phytophthora megakarya][more]
XP_008890391.12.100e-4764.86hypothetical protein PPTG_00695 [Phytophthora para... [more]
XP_009517103.14.700e-4763.51hypothetical protein PHYSODRAFT_353690 [Phytophtho... [more]
XP_009037662.16.100e-4771.74hypothetical protein AURANDRAFT_7786, partial [Aur... [more]
OQS03242.11.000e-4664.86hypothetical protein THRCLA_04466 [Thraustotheca c... [more]
XP_009828937.11.400e-4664.86hypothetical protein H257_05695 [Aphanomyces astac... [more]
XP_008608166.11.800e-4664.86hypothetical protein SDRG_04278 [Saprolegnia dicli... [more]
OQR96791.11.800e-4663.51dynein 18 kDa light chain [Thraustotheca clavata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003918NSK003918Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00060.1NO05G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00060.1NO05G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00060 ID=NO05G00060|Name=NO05G00060|organism=Nannochloropsis oceanica|type=gene|length=564bp
ATGGTCTTGACCCAAGAAGAGATCGACGCCTGCCGGGCGGCGTTTCAAGC
CTTTGACGCGGATAACACGGGCACTTTAGACGTGGCGGCGTTGCGTGGGG
TGCTTGGGTTTTTGGGACAAAAGCCCACTGAGGACGAATTATTTATGATG
ATTGCCGAAGTCGACGAAGAGATGAGTGGCATGCTCGACTTTGGGGAGCT
CTTGCGAGTAATTGAGGTGCAAAAGATGAAAGCTTTGGCGTTTGACGACG
AGGGCGACATGGTCGATGCCTTTGTGGCCTGTGGGGGCCGAGCAGACAAG
CTGGGGCACGTAAAACGGGAAACGCTGGTGCGCATTATCAAGAAGGATTT
CGGCTTGATGATTGATATCGAGGAATTGATTAATAAAGTGGACACGGACG
Ggtgcgtttcttgtggatgggaatggtgggatgagtaggagggcggacgg
atgagatctacatgtcttattttccattttttccccttcttatttcccac
attctaaccaatacccagGTCAGGCGAAATTGAGTACCAGGAGTTTAAGA
TGCTGCTCTCTTAG
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protein sequence of NO05G00060.1

>NO05G00060.1-protein ID=NO05G00060.1-protein|Name=NO05G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MVLTQEEIDACRAAFQAFDADNTGTLDVAALRGVLGFLGQKPTEDELFMM
IAEVDEEMSGMLDFGELLRVIEVQKMKALAFDDEGDMVDAFVACGGRADK
LGHVKRETLVRIIKKDFGLMIDIEELINKVDTDGSGEIEYQEFKMLLS*
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Synonyms
Publications