NO04G04360, NO04G04360 (gene) Nannochloropsis oceanica

Overview
NameNO04G04360
Unique NameNO04G04360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3052
Alignment locationchr4:1178901..1181952 -

Link to JBrowse

Properties
Property NameValue
DescriptionExosome component 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1178901..1181952 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
GO:00084083'-5' exonuclease activity
GO:0003824catalytic activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO:0006139nucleobase-containing compound metabolic process
GO:0090305nucleic acid phosphodiester bond hydrolysis
GO:0044237cellular metabolic process
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0000176nuclear exosome (RNase complex)
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR010997HRDC-like
IPR002121HRDC_dom
IPR0025623'-5'_exonuclease_dom
Homology
BLAST of NO04G04360 vs. NCBI_GenBank
Match: EWM28817.1 (exosome component 10 [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 3.500e-100
Identity = 313/691 (45.30%), Postives = 379/691 (54.85%), Query Frame = 0
Query:    1 MRSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRRELGREGGRVRGVWDGSREVCLLRYRKEKFDPEGYLKLMVG--------GMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTECGGAGGSLPMLVTKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSSTSVFDLHLRRQ---EPKDASLPXXXXXXXXXXXPTEELYLTAGWTSPL--------IPSSLDTMPSLAVPPTV----ISTTANTTAIID-------PSRQGGRGGGMA-VVPAQGNAGMETYRSFSHSLELSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWDSTHLQYAAGVDPLAAARVLLRKEQGLPAINDATVEFDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSMADIYKISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPFDPELEGYFGGSAVVTGVMAPSFTSHGGNSAAVLANKKTRKHDAEDTLKFMSSIGWVNPAA 661
            +RSFQGLVCLMQ+STR+RDFL+DTL   +RR +GPLL DLFTDHTV+K+FHGA+SDIKWLQRDFGLYVVNLFDTF+AAQAL  P KSLAYLL HY GV  DKQYQLADWR+RPLPE M  YAREDTHYLL++ +CLRR+LGRE GR++ V +GS+ V LLRYRKE FDPEGY +L+ G        G GG +GG    + + L+ L++WRD VAREEDES GYVC D+LL R+AK+RP T GG+ EC G+G +LP LV  R E                                          +S+ D   +R+      ++              P  +        +PL        + S++   P+L +PP +    +  +A  T   D        S   GR G  A VV A GN G+E++R   HS+ LS                                                          E D+    YA  +DPLA AR LLRKEQGLP +N+A V+F XXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXX                              P DPEL  YFG +  +    +P   SH G   +VL NK+TR  D E+ +KFMSSIGWV+  A
Sbjct:  314 LRSFQGLVCLMQISTRERDFLVDTL--ALRREVGPLLHDLFTDHTVLKIFHGAESDIKWLQRDFGLYVVNLFDTFVAAQALHMPKKSLAYLLQHYVGVVLDKQYQLADWRVRPLPEKMLHYAREDTHYLLHLHDCLRRDLGREQGRIQEVLEGSQAVSLLRYRKETFDPEGYGRLLQGPRRWTGERGEGGREGGLAPVQRETLKALYDWRDRVAREEDESPGYVCPDKLLLRLAKVRPLTRGGVQECVGSGSALPPLVGARMEDMLQVVGAAGKKEGEEEDKARVFSAGG-------------GESSLGDGGTQRRVNTRTSESKATATTVHADAEKTPLSDYAFPVYVPAPLEDSLSQERVSSTIHPPPTLPLPPVLNTEELYLSAGWTVASDGLQSMTPVSTGAGREGVRAGVVAATGNEGLESHRGLQHSIGLS------------------------VRVRSSNVEEASAPTLQAGVEEREGGREGGGKCTEGDAQG-PYATALDPLAGARALLRKEQGLPPVNNAEVDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVEGPARLGTTRSSSPTPGDTSLSL----PLDPELHEYFGDA--LDNAPSPVPLSHEG--VSVLTNKRTRPEDTEEIVKFMSSIGWVDANA 956          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: XP_002590508.1 (hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae] >EEN46519.1 hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae])

HSP 1 Score: 235.0 bits (598), Expect = 9.700e-58
Identity = 120/242 (49.59%), Postives = 158/242 (65.29%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRREL----GREGGRVRGVWDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RSFQG  CLMQ+STR  D+++DTL +   RA   +L D FTD  VVKVFHGAD DI+WLQRDFG+YVVN+FDT  A+  LG P  SLAYLL  Y  V+ DK+YQLADWRIRPLP  M +YAREDTHYLL+I++C+R EL      E   +    + SR+VCL RY+K  +  + YL L    +   K      ++  +  ++ WRD +AR+EDES+GYV  + +L  +A+  P+   G+  C
Sbjct:  305 RSFQGFTCLMQVSTRDHDYIVDTLAL---RADLHVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLGLPRHSLAYLLKTYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMRSELLDRGNNEANLLHNTLERSRQVCLQRYQKLLYTEDSYLNL----LNKHKKTFNSQQLHAVRLVYRWRDTIARQEDESTGYVLPNHMLLVLAETLPKQIQGVFAC 539          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: XP_015928084.1 (exosome component 10-like [Parasteatoda tepidariorum])

HSP 1 Score: 234.6 bits (597), Expect = 1.300e-57
Identity = 115/245 (46.94%), Postives = 166/245 (67.76%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRRELGREGGRVRGV----WDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGRE---GPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RSFQG  CLMQ+S+R +D+++D L +   R+  P+L D+FTD  +VKV HGAD DI WLQRDFG+YVVN+FDT  AA+ L F   SL+YLL HY  +  DK++QLADWRIRPLPE M +YAREDTHYLLY+++CL+ +L  +G  ++ +    ++ S+ +CL +Y+K  F  + +++L       +K  R+   G ++ CL+ ++ WRD +ARE DES  YV  + +L +IA+  PR   G+  C
Sbjct:  273 RSFQGFTCLMQISSRSKDYIVDVLAL---RSQLPVLNDIFTDPKIVKVLHGADMDILWLQRDFGVYVVNMFDTGQAARVLHFAHLSLSYLLKHYCKLDVDKKFQLADWRIRPLPEEMIKYAREDTHYLLYVYDCLKNDLINQGNEMKNLLHSTFERSKSICLKKYQKPLFSDDKFMEL-------YKKSRKMFNGKQLYCLKEIYSWRDRMAREYDESLLYVLPNHMLLQIAEALPREQQGILAC 507          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: XP_007895971.1 (PREDICTED: exosome component 10 [Callorhinchus milii])

HSP 1 Score: 233.4 bits (594), Expect = 2.800e-57
Identity = 116/242 (47.93%), Postives = 162/242 (66.94%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRRELGREGGR----VRGVWDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RSF GL CL+Q+STR+ DF++DTL++   R+   +L ++FTD  +VKVFHGADSDI+WLQRDFG+YVVN+FDT  AA+ L     SL +LL HY  V+ADK+YQLADWR+RPLP+ M  YA+EDTHYLLY+++ ++ +L  +G      +  VW  S++VCL +Y K  F  E YL+L        K      +M     L+ WRD +AR+EDES+GYV  + ++ +IA+  P+   G+  C
Sbjct:  321 RSFLGLTCLLQISTREEDFIVDTLEL---RSELYILNEVFTDPAIVKVFHGADSDIEWLQRDFGIYVVNMFDTHQAARTLNLARHSLDHLLRHYCSVEADKRYQLADWRMRPLPKEMLHYAQEDTHYLLYVYDTMKNQLWEQGNEQARLIHLVWHKSKDVCLKKYCKPIFTEESYLEL----NRKQKKHLNTQQMTAFRLLYSWRDKMARQEDESTGYVLPNHMMLKIAEELPKEPQGILSC 555          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: KZS08544.1 (Exosome component 10 [Daphnia magna])

HSP 1 Score: 233.4 bits (594), Expect = 2.800e-57
Identity = 121/241 (50.21%), Postives = 161/241 (66.80%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRRELGREG---GRVRGVWDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RSFQG+ CLMQ+ST KRD+++DTL  E+   + P L ++F +  +VK+FHGAD DI+WLQRDFG+YVVNLFDT+ AA+ LGF   SLA++L HY  V ADKQYQLADWRIRPLPE M  YAREDTHYL YI+  ++++L  +G     +  VW  SR VCL RYR      E +L+L        K      ++  L+ L+ WRD +AREEDES+G+V    ++ +IA + P+   G+  C
Sbjct:  265 RSFQGITCLMQISTNKRDYIVDTL--ELWDHLQP-LNEVFCNPKIVKIFHGADMDIQWLQRDFGIYVVNLFDTYHAAKLLGFAQLSLAFILRHYCQVVADKQYQLADWRIRPLPEQMVNYAREDTHYLGYIYEKMKKDLKMKGTGDNLLSAVWQNSRLVCLKRYRIPPITAESHLELYRLS----KKIFNERQLYALKELFVWRDRIAREEDESTGFVLPKHMMLQIADVLPKEMQGILAC 498          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: XP_019637240.1 (PREDICTED: exosome component 10-like [Branchiostoma belcheri])

HSP 1 Score: 233.4 bits (594), Expect = 2.800e-57
Identity = 119/242 (49.17%), Postives = 159/242 (65.70%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRREL----GREGGRVRGVWDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RSFQG  CLMQ+STR +D+++DTL +   RA   +L D FTD  +VKVFHGAD DI+WLQRDFG+YVVN+FDT  A+  LG P  SLAYLL  Y  V+ DK+YQLADWRIRP+P  M +YAREDTHYLL+I++C+R EL      E   +    + SR+VCL RY+K  +  + YL L    +   K      ++  +  L+ WRD VAR+EDES+GY+  + +L  +A+  P+   G+  C
Sbjct:  322 RSFQGFTCLMQVSTRDQDYIVDTLTL---RADLHILNDTFTDPKIVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLGLPRHSLAYLLKTYCDVEPDKKYQLADWRIRPIPSEMIQYAREDTHYLLHIYDCMRSELLDRGNNEANLLHNTLERSRQVCLQRYQKLLYTEDSYLNL----LQKHKKTFNSQQLHAVRLLYRWRDTVARQEDESTGYILPNHMLLVLAEALPKQTQGVFAC 556          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: XP_009860766.1 (PREDICTED: exosome component 10-like [Ciona intestinalis])

HSP 1 Score: 232.6 bits (592), Expect = 4.800e-57
Identity = 121/242 (50.00%), Postives = 166/242 (68.60%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRRELGREG--GRVRGVWDGSREVCLLRYRKEKFDPEGYLKLMV--GGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RS+QG+ CLMQLSTR +D+++DT+ +   RA   +L  +F +  ++KVFHGADSDI WLQRDFG+YVVNLFDT  AA+ALG    SL YLL HY  V+ADK+YQLADWRIRPLP+ M  YA+ DTHYLLY+++ +R +L + G  G +  V D SR++C L+Y K   +   +L L+      GG K  R   +++ L  ++ WRDG+AR+EDES GYV  + +L +IA++ PR   G+  C
Sbjct:  145 RSYQGITCLMQLSTRTKDYIVDTIAL---RAELNILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALGLQRHSLDYLLTHYCNVQADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTGDPGLLHKVIDKSRDICCLKYEKPITNDTSHLVLLEKHKRRGGKKDFRP-QQIEALRLIFAWRDGLARQEDESCGYVLPNHMLLQIAEILPREAQGVLAC 382          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: CAG07559.1 (unnamed protein product, partial [Tetraodon nigroviridis])

HSP 1 Score: 232.6 bits (592), Expect = 4.800e-57
Identity = 119/242 (49.17%), Postives = 161/242 (66.53%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRREL----GREGGRVRGVWDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RSF G+ CLMQ+STR+ DF+IDTL++   R+   +L + FTD  +VKVFHGADSDI+WLQRDFGLYVV LFDT  A++AL     SL +LL H+  V +DK+YQLADWRIRPLPE M +YAR DTHYLLYI++C+R +L      + G ++ VWD SR++ L +Y K  F  E YL+L        K      ++     L+ WRD +AR+EDES+GYV    ++ +I++  P+   G+  C
Sbjct:  287 RSFLGITCLMQISTREEDFIIDTLEL---RSEMYILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDTHQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARADTHYLLYIYDCVRAQLLDFNHGQPGLLKSVWDRSRDISLKKYMKPIFTEESYLEL----QRKQKKSFNTQQLAAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELPKEPQGIIAC 521          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: XP_004340678.1 (3'5' exonuclease domain containing protein [Acanthamoeba castellanii str. Neff] >ELR18636.1 3'5' exonuclease domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 232.3 bits (591), Expect = 6.300e-57
Identity = 129/258 (50.00%), Postives = 164/258 (63.57%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRREL-GR---EGGRVRGVWDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTECGGAGGSLPMLVTKRAE 256
            R+FQG  CLMQ+STR  DF++DTL +   R    LL   F D  +VKVFHG+DSDI WLQRDFGLYV+N+FDT  A + L +PS SLAYLL H+ GV ADK+YQLADWRIRPLPE M +YAREDTHYLL+I++ LR EL GR       +  V + SRE+CLL+Y K  + P  +L L       +       +M+    +++WRD VAREEDES  YV  + +L  IA++ P +   L  C      +P LV   AE
Sbjct:  290 RTFQGFTCLMQISTRTEDFIVDTLAL---REHMHLLSSSFHDANIVKVFHGSDSDIMWLQRDFGLYVINMFDTGQACRVLEYPSFSLAYLLRHHCGVLADKKYQLADWRIRPLPEEMLKYAREDTHYLLFIYDKLRNELIGRANMSNNLILAVLNRSRELCLLQYEKPLWTPTSHLSL----YNRFNYVFNEQQMRVFAAVYKWRDTVAREEDESYRYVLPNHMLFHIAELVPTSVPALLAC---CNPVPPLVRINAE 537          
BLAST of NO04G04360 vs. NCBI_GenBank
Match: XP_008936225.1 (PREDICTED: exosome component 10, partial [Merops nubicus])

HSP 1 Score: 232.3 bits (591), Expect = 6.300e-57
Identity = 122/242 (50.41%), Postives = 158/242 (65.29%), Query Frame = 0
Query:    2 RSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVFHGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKADKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRRELGREGG----RVRGVWDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWEWRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTEC 240
            RSF GL CLMQ+STR  DF+IDTL +   R+   +L + FTD  +VKV HGADSD++WLQ+DFGLY+VN+FDT  AA+ L     SL +LL  Y  V ADKQYQLADWRIRPLPE M RYAREDTHYLLYI++ +R EL   G     +++ VW  SR++CL +Y K  F  E YL+L        K      ++     L+ WRD +AR+EDES+GYV  + +L +IA+  P+   G+  C
Sbjct:  282 RSFLGLTCLMQISTRTEDFIIDTLAL---RSDMSMLNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGRHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIRYAREDTHYLLYIYDKVREELWERGNEQPTQLQVVWQRSRDICLKKYIKPLFTDESYLEL----YRRQKKHLNTQQLAAFRLLFAWRDKIARQEDESTGYVLPNHMLLKIAEELPKEPQGIIAC 516          
The following BLAST results are available for this feature:
BLAST of NO04G04360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28817.13.500e-10045.30exosome component 10 [Nannochloropsis gaditana][more]
XP_002590508.19.700e-5849.59hypothetical protein BRAFLDRAFT_124507 [Branchiost... [more]
XP_015928084.11.300e-5746.94exosome component 10-like [Parasteatoda tepidarior... [more]
XP_007895971.12.800e-5747.93PREDICTED: exosome component 10 [Callorhinchus mil... [more]
KZS08544.12.800e-5750.21Exosome component 10 [Daphnia magna][more]
XP_019637240.12.800e-5749.17PREDICTED: exosome component 10-like [Branchiostom... [more]
XP_009860766.14.800e-5750.00PREDICTED: exosome component 10-like [Ciona intest... [more]
CAG07559.14.800e-5749.17unnamed protein product, partial [Tetraodon nigrov... [more]
XP_004340678.16.300e-5750.003'5' exonuclease domain containing protein [Acanth... [more]
XP_008936225.16.300e-5750.41PREDICTED: exosome component 10, partial [Merops n... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009353NSK009353Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04360.1NO04G04360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|297054gene_2223Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g165gene1779Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04360.1NO04G04360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04360 ID=NO04G04360|Name=NO04G04360|organism=Nannochloropsis oceanica|type=gene|length=3052bp
ATGAGGTCTTTTCAAGGGTTGGTCTGTTTGATGCAGCTCTCGACGAGGAA
GAGAGACTTTTTGATTGATACCCTCCAGGTCGAGGTACGGAGGGCGATGG
GTCCCTTGTTGCTGGACTTGTTCACGGACCATACGGTGGTAAAGGTGTTT
CATGGCGCCGACAGCGATATCAAGTGGCTGCAGCGTGACTTTGGTCTGTA
TGTTGTGAATCTGTTTGACACCTTCCTCGCGGCCCAGGCGCTCGGTTTCC
CTTCCAAGTCGCTTGCTTATTTGCTCCATCATTACACGGGCGTCAAGGCC
GATAAGCAATATCAGTTGGCTGACTGGCGCATAAGACCCCTCCCAGAGAT
CATGCAGCGGTATGCTCGGGAAGACACGCATTATTTACTCTATATATTTA
ATTGCTTGCGGAGGGAGCTAGGGAGGGAGGGAGGGCGCGTGAGGGGTGTA
TGGGATGGTTCCAGGGAGGTATGTCTGTTGAGGTACAGAAAAGAGAAGTT
TGATCCGGAGGGGTACTTGAAGCTGATGGTGGGAGGGATGGGGGGATGGA
AGGGAGGGAGGGAGGGCCCGGAGATGAAGTGTTTAGAGAGGCTGTGGGAG
TGGAGGGATGGGGTGGCGAGGGAGGAGGATGAGAGCTCCGGGTATGTTTG
CTCGGACCGACTTTTGTGTAGGATTGCGAAGATGAGGCCTCGGACTTTTG
GGGGGTTGACTGAGTGTGGAGGGGCGGGGGGGTCGTTGCCGATGCTGGTG
ACGAAGAGAGCGGAGGAAGTCTTGAAGGTCATAGGGGGAGGAGGAGGAGG
AGGAGGGGGTGACGGAGGAGGAGGGGCAATAGGAGGAAAAGGGGCATCTA
ATCACACGTTTCCAACTTTTCCGCCTGTGCCAGTCTCTTCAACGAGTGTG
TTTGATCTTCATTTGCGGCGGCAAGAGCCAAAGGATGCCTCCCTCCCCTC
CTCCCTCCCTTCCTCCTTCCCTCCCGTCCTCCCCACGGAGGAGTTGTACC
TGACAGCAGGATGGACCTCGCCTTTGATCCCTTCCTCCCTCGACACGATG
CCATCGCTTGCTGTTCCCCCCACCGTCATTTCTACCACCGCCAACACTAC
AGCAATCATTGACCCTTCCCGGCAGGGAGGGAGGGGGGGAGGGATGGCCG
TAGTGCCGGCCCAGGGTAACGCAGGGATGGAGACATATCGCTCATTTTCT
CATTCCTTGGAATTATCCTCCTCCCCAACCACACGTGCGACTGAAAATAA
AGCAGCCGTGATGATGATGATGTCGTCCGTGGAGAAGAAAGGAGGGAGGG
AAGAAGGAAGGGAGCGAGAGGGGGCGTTTGGGGACCAGTTGAAAGCAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGGAGGCGGAGAATGGGA
TAGTACGCATCTGCAATACGCAGCTGGTGTGGACCCCCTGGCAGCAGCGA
GGGTGCTGCTGCGAAAGGAGCAGGGTCTGCCGGCGATAAATGATGCCACG
GTGGAGTTTGACGAGGAGGAGGAGGCGGCGGAGGAGGAAGGGGAAGGAGG
GAAGCAGGAGGAGGAGGGGGAAGAGGAGGAAGAGGAAATGCCTAGAAGCA
TGGCAGACATCTATAAGATCTCGAACAGGAACCGAAAGAGGAACAAGGAG
AAGAAGAAGCAGCTGGATGGAGCCGGCAACAGCGACAGCACCACGGGGGT
TGACGAGGGGTTGAGCGCAGACAACTCAACCACACCAGCAGCAGCAGCAG
CAGTCGCAGCAGCAGCAGCAACAACAGCAACAGCGCCTCTCCCACCTTTC
GACCCTGAGCTCGAGGGATATTTTGGAGGTTCCGCGGTGGTGACAGGAGT
GATGGCCCCCTCCTTCACGAGCCACGGGGGCAACAGCGCGGCGGTGTTAG
CCAATAAAAAAACGAGGAAGCATGATGCAGAAGACACCTTGAAGTTCATG
AGTAGCATCGGTTGGGTTAATCCAGCGGCTTCGGCCATCCCTCCCCCGAT
CCCTCCCCCGCCTATCCCTTCCCACCCACATAATCAGCAGCAGCAACCGC
AACAGCAACAGCAGCAGCAGCATGGGCTGACCGTTGAGGAAATTCAGCAG
ATTCAGTCATCAGGGATGGGAGGAGTGAGGGGAGGAGGAGGAGGAGGAGG
AGGAGGAAACCGTCCAGACACTGCCTTTATTCGGCAGCAGCAGCTGTGGC
TTCAGGAGCAGCAGCAGCAGCAGCAGCAAGAGGCAGGTCGTGGCGTAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGACGATGAC
GGGCGGTTCCGCTGGTGCGGGTGGAGGGCTGGGACGTGGTGACGGCTTTC
TCTCCGCCCTGCCCGCCCACCAATACGAGCCCGGCGCTGGAGGCGTCCTT
CCACAGGGAGCCCATCCCCCTCCCTCCCTCCCCCCCTCCTTGTACAGCAA
CCCTTACCTCCAGCAACCACCACCACAGCAGCAGCAGACAGGGATGAATT
ATAGCGCCATCTCTCCCTCCGTCGTTTCTTCCATGGGGATGAGTGCTTAT
GTGCAAGGTAGCGCAGGAGTGCCAGGAGGAGGACAGGGAGGAGGGAGGGA
AGGAGGGAAGGAGGGAAGGAAGGTCAATCCATATATGATGGCCGTGCCAC
CTGGACGGCAGCAACAGCAGCAGGAGTTGTTGTTGCAGCAGACATTTCAG
CAACAGCAGCAGCAGTGGCGACTACAACAGCAGCAGCAGCAGCAGCAGCA
GCAACAACAACAACAACAGCAACAACAACAGCCTTTCTGATAGGTGGGAT
AAGAAGATTCTCATTGTTTGTATGACTTCCGGCGCGAAGAGGGAATGAGT
GCACCTGGAGGACGGAGACGAAGGGAAGAGAGTAAATAGGAGAGATGGCC
AGGAAGAAAAGAAGGAAAAGCAAGAGCTTTTAACTATTTACAGCCACAAG
TTAAAGTGATGATAGCAATGATGAGATACAGGGGGAGGGGGTGGCCTCGC
TGCTCAGTGATACACAATGGGCAACAAAGAACGAACGAACCGCCATCGTC
TT
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protein sequence of NO04G04360.1

>NO04G04360.1-protein ID=NO04G04360.1-protein|Name=NO04G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=930bp
MRSFQGLVCLMQLSTRKRDFLIDTLQVEVRRAMGPLLLDLFTDHTVVKVF
HGADSDIKWLQRDFGLYVVNLFDTFLAAQALGFPSKSLAYLLHHYTGVKA
DKQYQLADWRIRPLPEIMQRYAREDTHYLLYIFNCLRRELGREGGRVRGV
WDGSREVCLLRYRKEKFDPEGYLKLMVGGMGGWKGGREGPEMKCLERLWE
WRDGVAREEDESSGYVCSDRLLCRIAKMRPRTFGGLTECGGAGGSLPMLV
TKRAEEVLKVIGGGGGGGGGDGGGGAIGGKGASNHTFPTFPPVPVSSTSV
FDLHLRRQEPKDASLPSSLPSSFPPVLPTEELYLTAGWTSPLIPSSLDTM
PSLAVPPTVISTTANTTAIIDPSRQGGRGGGMAVVPAQGNAGMETYRSFS
HSLELSSSPTTRATENKAAVMMMMSSVEKKGGREEGREREGAFGDQLKAG
GGGGGGGGGGSGGGEWDSTHLQYAAGVDPLAAARVLLRKEQGLPAINDAT
VEFDEEEEAAEEEGEGGKQEEEGEEEEEEMPRSMADIYKISNRNRKRNKE
KKKQLDGAGNSDSTTGVDEGLSADNSTTPAAAAAVAAAAATTATAPLPPF
DPELEGYFGGSAVVTGVMAPSFTSHGGNSAAVLANKKTRKHDAEDTLKFM
SSIGWVNPAASAIPPPIPPPPIPSHPHNQQQQPQQQQQQQHGLTVEEIQQ
IQSSGMGGVRGGGGGGGGGNRPDTAFIRQQQLWLQEQQQQQQQEAGRGVG
GGGGGGGGGGGGGKTMTGGSAGAGGGLGRGDGFLSALPAHQYEPGAGGVL
PQGAHPPPSLPPSLYSNPYLQQPPPQQQQTGMNYSAISPSVVSSMGMSAY
VQGSAGVPGGGQGGGREGGKEGRKVNPYMMAVPPGRQQQQQELLLQQTFQ
QQQQQWRLQQQQQQQQQQQQQQQQQQQPF*
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Synonyms
Publications