NO04G03990, NO04G03990 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G03990
Unique Name	NO04G03990
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3225
Alignment location	chr4:1071820..1075044 +

Link to JBrowse

Properties


Property Name	Value
Description	Prefoldin

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1071820..1075044 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

[Close]

BLAST of NO04G03990 vs. NCBI_GenBank
Match: EWM28735.1 (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 2.600e-46
Identity = 395/934 (42.29%), Postives = 466/934 (49.89%), Query Frame = 0

Query:    1 MDDTGATISGPGGNESGSTSEAHAAAKAASGGAKELTKEQLLGYIKKLKHKXXXXXXXXXXXXXXXXXXXXXXXXXEGRAAALTKKDRETDNRLIQAAEDVHRAEADGKSRVNASQTRVDELDRGLEESRRAKDGQIELAERAKRAEGELQRAQDRIATLETDLAASLASASSTAAAKVEASTPSTFTNEVGEMARLQAENEEMNGKLKMLIERYKALQTKAKSVVEEKAGLAQELEAARXXXXXXXXXXXXXXTGVQQQLERAKEELVHVRAERDGLTTELASLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAFAALQNEQETLQGKIAALSQQPEEEIETIGREDNDNKKGXXXXXXXXXXXXXXXXXXXXXXSQAQTAQVELERALACLQEERDML--RGNVAEITERLVEADAAKAVLMEEAQKSVDTHHQEVQRXXXXXXXXXXXXXXXXXXXXXXXXXNGAAVVEALAVSQKEVVSLQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKTLLAKSRSVIQLRDQELGKIKAAAEAEAVAPSSFTVTLRVRAGQGGKEAGGKEGKEDGMIWCHVVL-PLPPVPAAXXXMQDELSVXXXXXXXXXXXXXXXXXXXPSTLWIKEETVREWTKQALANAPGSVASVSCWPAVLQETWVSKEEGLTHALEEERKAKQLLEAEFDKYRARAHAALKKATERSGEDKHRDRYVEEENARLIEEREQWEAVARELEDKIKELEVVVXXXXXXXXXXMKAAERGWKKAVXXXXRRGMILLGEAEAKADMXXXXXXXXXXXXXXXXXXXGDALEEKIIELEGQLKAA 932
            MDD GAT +G G     S  EAH    A  GGAKELTKEQLLGYIKKLK K                         E RAA L +KDR  D+RLIQAAED+HR   + + R    Q RV EL+  +E +RR +DGQIE AERAKRAEGEL+RAQ+RIA LE       A+  + A   + ++TP++ +++  ++ARLQ E EEM  KLK++++RYK LQ KAKSVVEEKA + Q+LEA +                +++            R E++ L  E+A    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                        E   L+ ++ AL                +  +G                            Q   E A++  ++E++ L  R                                     XXXXXXXXXXXXXXXXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               DQE+ K KAAAEA A  P+SF V +RVR           +G   G +WC VV  P PP+  A    QD   +                   P++ W+ EE    WT++ALA  PGSV  V+ WP VLQE W  +E  L  A+EEE   ++ +E EF +YR RAHAALKKATERSGE++ RDR +EEE  RL E           LE          XXXXXXXXXX           V     RG             XXXXXXXX           GDALEEKI ELEGQL+AA
Sbjct:    1 MDDPGATAAGQG----SSGREAH----AKGGGAKELTKEQLLGYIKKLKQKVKEVENELQESKAQHAALQSGHLELEERAAVLGEKDRSADDRLIQAAEDMHRVHTEAEGREKVLQARVAELEHEIEAARRTQDGQIEQAERAKRAEGELRRAQERIAFLE-------AAHDTRAPGPLPSATPNSESDDKEQVARLQEEKEEMQLKLKLMVDRYKTLQAKAKSVVEEKACVLQQLEALQAATAESEKQAAGCLASIKEDF----------RQEKERLAAEIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSW------------------------------------------------EASEEAAALRSRVEAL----------------ETARGDW--------------------------QTRHEDAMSEFKKEKEALAARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQEISKSKAAAEALAAPPASFQVAMRVR-------TDSSDGGPAGTVWCLVVTPPSPPIQPAPASSQD---LCGLSPSSPGDPSVSDPAPPPASQWVAEEKALAWTREALARVPGSVLEVNDWPVVLQEGWAQRESSLRSAMEEEVAGRRAVEEEFHRYRGRAHAALKKATERSGEERQRDRALEEEKLRLAEXXXXXXXTVMSLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKEEAERGXXXXXXXXXXXXXXXXXXXXXWTQRVEAQDREGDALEEKIAELEGQLQAA 809

The following BLAST results are available for this feature:

BLAST of NO04G03990 vs. NCBI_GenBank

BLAST of NO04G03990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28735.1	2.600e-46	42.29	Prefoldin [Nannochloropsis gaditana]	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL082	nonsL082	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL080	nonsL080	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR110	ngnoR110	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009396	NSK009396	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G03990.1	NO04G03990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524194	gene_2182	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100002g131	gene1807	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G03990.1	NO04G03990.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G03990 ID=NO04G03990|Name=NO04G03990|organism=Nannochloropsis oceanica|type=gene|length=3225bp
ATGGATGACACGGGGGCGACGATCTCGGGACCTGGGGGCAATGAGAGTGG
GAGTACAAGTGAGGCCCATGCCGCTGCCAAGGCAGCAAGCGGCGGGGCCA
AGGAACTGACCAAGGAGCAACTTCTGGGCTACATCAAGAAACTCAAGCAT
AAGGTTAAGGAAGTGGAGACAGAGTTGCAGCAAATCAAGACGCAACATGC
GGCGTTGCAGGTCGACCACACGGAGCTAGAGGGACGGGCGGCAGCATTGA
CAAAAAAAGATCGCGAGACTGATAACCGGCTCATTCAAGCTGCCGAGGAC
GTGCACCGAGCGGAAGCTGACGGCAAGAGCCGGGTCAATGCCTCACAGAC
ACGCGTGGATGAGTTGGATCGTGGGTTGGAGGAATCCCGACGGGCGAAAG
ATGGCCAGATTGAACTGGCAGAACGTGCGAAACGGGCCGAGGGGGAATTG
CAGCGCGCCCAGGACCGCATAGCCACGTTGGAGACTGATTTGGCGGCAAG
CCTGGCAAGCGCATCAAGTACAGCGGCTGCGAAGGTAGAGGCATCCACAC
CATCAACTTTTACGAATGAGGTTGGGGAGATGGCGCGGTTGCAGGCCGAG
AACGAGGAAATGAACGGCAAGCTTAAAATGCTGATAGAGCGTTATAAGGC
ACTCCAAACCAAAGCCAAGTCGGTGGTGGAGGAGAAGGCGGGTCTCGCCC
AAGAGCTTGAAGCAGCACGGGCAGCAACAGCAGCAGCAGTAGCTGCGACA
ACAGAGGTCGCCACAGGTGTGCAACAGCAGCTCGAGCGAGCGAAGGAGGA
ATTGGTTCATGTGCGGGCGGAGCGTGATGGTCTTACAACCGAGCTGGCGT
CCTTGCGGGTAGCTGCGACGGCAGGACCTGGAGTTCTCCAGCACGAGCAG
CAAGAGCAGTATCAGCAACTTCTCAAGGAGCTAGAGCAGGTCCGGAGGGA
ACGAGATGCGTTAACCGTTGAGCTTAAGTCGTTGCGTGCAACGGCGGCGG
AGGCTACCGTTGCTGCACAGGAACAGCATGTGGAAGGACAGCAGCAAGAG
CTACTTCAGTTGAAAAAGGAGAGAGAAAGTCTTGCAGCTCAGCTGGCATC
CTGGCGGAGCGAAGCCGAAGCAGCTCAAGCAGCATATGCAGCGTCTCAAG
CACAACACGAACTGGCCTTTGCTGCACTACAGAATGAACAAGAAACGCTA
CAAGGCAAGATTGCCGCCCTATCGCAGCAGCCGGAGGAGGAGATTGAGAC
TATCGGGAGGGAAGATAACGACAACAAGAAAGGGCTTGAGAAGGAGGTGA
AGCTGTGGCAGGGGGAGGTGGCTTCTCTGAAGGAGCAGCCGAAGGAGGGG
TCTCAGGCACAGACTGCCCAGGTCGAGCTCGAGCGGGCTTTGGCTTGCCT
CCAGGAGGAGCGAGACATGTTACGGGGCAATGTGGCTGAGATTACGGAGC
GATTGGTCGAGGCAGATGCAGCCAAGGCTGTCTTGATGGAGGAGGCACAA
AAGTCCGTGGACACTCACCACCAGGAAGTACAGCGACTCCAAAGGGAGCT
GGATGCTGCCACTGCGGCGGCAACAGCGGAACGTGAGCGCTCTCTCGACT
CCTCTCATGACAATGGAGCAGCAGTTGTAGAGGCATTGGCGGTGAGTCAA
AAGGAGGTGGTATCCTTGCAGCTGCAGCTTGAGGCGCAACAGACCAAGGT
GAACGAGCTGCAATTAAAGGTCGCTGCTGCCAAGACGGAGAGAGAGACGG
TCCGAGCGCAGTTGGCGGCCGAGCTAAGGAATGCAGAGCAACAAGTAAGG
AAAGCCGAGGGAGAAGTGGCTGCGGTGGAAGGGCAAAAGAAGGAGCAGGA
GGAGATGGTGAAAAGGTTGAAAACGCTGCTGGCTAAATCAAGGAGCGTGA
TCCAATTGAGAGATCAGGAGCTGGGTAAGATCAAGGCCGCTGCCGAGGCG
GAAGCAGTTGCACCTTCTTCTTTTACAGTTACTTTGCGGGTGCGGGCTGG
GCAAGGGGGTAAGGAGGCAGGCGGGAAGGAAGGGAAGGAGGACGGTATGA
TCTGGTGTCATGTGGTGTTACCGCTACCACCTGTACCAGCAGCACCCGCA
GCAATGCAAGACGAGCTTTCTGTCTCGAGCAGCACCAGCGAGCCCCCGAC
CCTGCCTCAGCAGCAGCAGGAGCAGCAGCGACCGTCAACACTTTGGATAA
AGGAGGAGACAGTGCGAGAATGGACAAAGCAAGCTCTTGCCAACGCACCG
GGCAGCGTCGCGAGTGTGTCTTGCTGGCCGGCGGTGCTCCAAGAGACCTG
GGTGAGCAAGGAGGAAGGACTGACGCATGCACTGGAGGAGGAGAGGAAGG
CGAAGCAGCTTCTTGAGGCCGAGTTTGACAAGTACAGAGCACGGGCGCAT
GCGGCGTTGAAGAAAGCGACGGAACGAAGTGGAGAAGATAAGCACAGGGA
TCGTTACGTGGAGGAGGAGAATGCGAGGTTGATCGAGGAGAGGGAGCAAT
GGGAGGCTGTGGCGCGGGAGTTGGAAGACAAGATTAAGGAGCTTGAAGTG
GTAGTGCAGGAGCTGAGGGAGGAGCAGGAGGAGAGGATGAAAGCGGCAGA
GCGGGGATGGAAAAAGGCTGTGGAAGAGGAGGAGAGGAGAGGGATGATCT
TGCTCGGGGAGGCGGAAGCCAAGGCGGATATGAGGTGGAAGGAGACGGTC
GCGGAGTGGAGCAAAAAAATGGAGGCCAGTGAGCGAGAGGGCGATGCATT
GGAGGAGAAGATTATCGAGCTGGAAGGACAGCTGAAGGCAGCACAGGCAG
CAGCGGTTGCGGCCGATAATGCCGCTAAGGCTGCGTCGGCAGCTGCGGCG
ATGGCGAAGGCGACAGCCACGGCACAAGCCCGTGATGAAGCAGCAGCAGC
AGCTGCTGCTGCTGCTACTTTTACTGCGGGGAGGGTGACAGGCAAGTTTT
TGAGTTTTGAGCAGCAGCGAGGCGAAGGGGGAGAAGGAGGAGGAAATAGG
CAAGTGGACGACGATGGGAGATATGACCCGGTGCAGCGTAGCACCAACCA
GCGCACGGGCCACTCTGTCACTCCTCTGGACATCCCTCCTCCACCGCTCT
CTTCCTCTTCCTCGGCAGGTGGTGGGGGGTTCGGCAGCACCAGTGGCAGC
GGCGTAGGTGGTGGGGGAGGGGGGGAAGGGATGGGGAGGGTGACCTGGCA
AGTTTGGGAGATCAGTACGTGGTGA

protein sequence of NO04G03990.1

>NO04G03990.1-protein ID=NO04G03990.1-protein|Name=NO04G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1075bp
MDDTGATISGPGGNESGSTSEAHAAAKAASGGAKELTKEQLLGYIKKLKH
KVKEVETELQQIKTQHAALQVDHTELEGRAAALTKKDRETDNRLIQAAED
VHRAEADGKSRVNASQTRVDELDRGLEESRRAKDGQIELAERAKRAEGEL
QRAQDRIATLETDLAASLASASSTAAAKVEASTPSTFTNEVGEMARLQAE
NEEMNGKLKMLIERYKALQTKAKSVVEEKAGLAQELEAARAATAAAVAAT
TEVATGVQQQLERAKEELVHVRAERDGLTTELASLRVAATAGPGVLQHEQ
QEQYQQLLKELEQVRRERDALTVELKSLRATAAEATVAAQEQHVEGQQQE
LLQLKKERESLAAQLASWRSEAEAAQAAYAASQAQHELAFAALQNEQETL
QGKIAALSQQPEEEIETIGREDNDNKKGLEKEVKLWQGEVASLKEQPKEG
SQAQTAQVELERALACLQEERDMLRGNVAEITERLVEADAAKAVLMEEAQ
KSVDTHHQEVQRLQRELDAATAAATAERERSLDSSHDNGAAVVEALAVSQ
KEVVSLQLQLEAQQTKVNELQLKVAAAKTERETVRAQLAAELRNAEQQVR
KAEGEVAAVEGQKKEQEEMVKRLKTLLAKSRSVIQLRDQELGKIKAAAEA
EAVAPSSFTVTLRVRAGQGGKEAGGKEGKEDGMIWCHVVLPLPPVPAAPA
AMQDELSVSSSTSEPPTLPQQQQEQQRPSTLWIKEETVREWTKQALANAP
GSVASVSCWPAVLQETWVSKEEGLTHALEEERKAKQLLEAEFDKYRARAH
AALKKATERSGEDKHRDRYVEEENARLIEEREQWEAVARELEDKIKELEV
VVQELREEQEERMKAAERGWKKAVEEEERRGMILLGEAEAKADMRWKETV
AEWSKKMEASEREGDALEEKIIELEGQLKAAQAAAVAADNAAKAASAAAA
MAKATATAQARDEAAAAAAAAATFTAGRVTGKFLSFEQQRGEGGEGGGNR
QVDDDGRYDPVQRSTNQRTGHSVTPLDIPPPPLSSSSSAGGGGFGSTSGS
GVGGGGGGEGMGRVTWQVWEISTW*

Synonyms

Publications