NO04G03870, NO04G03870 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03870 vs. NCBI_GenBank
Match: PNX92388.1 (pentatricopeptide repeat-containing protein chloroplastic-like [Trifolium pratense]) HSP 1 Score: 79.3 bits (194), Expect = 6.800e-11 Identity = 68/252 (26.98%), Postives = 122/252 (48.41%), Query Frame = 0 Query: 292 LYSAALKGYGRMG-WKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVL-LPALPRPDLYSYNIVL-RALCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLILE----SSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 +Y+ +KGY + G D V + + S D V+ +++ AL + G +DRA+++L EM R S PA+ LK G + A E + + A +PD+ SYNI++ + +D GALS + +++ +GI P ++ TL+ +G K A + + + V + ++ L+ G++ G ++EA++V++KM G PNV TY + G A + G + +KE+ Sbjct: 375 IYTTLMKGYMKAGRVTDTVRMLEAMRCQDDSASHPDHVSYTTVVSALVKAGFMDRAREVLAEMT--RISVPANRITYNILLK-------GYCEQLQMDMARELLKEMDENAGIQPDVVSYNILIDGCILVDDSAGALSFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLAQRVFDEMANDTRVRVDLIAWNMLVEGYSKLGLVEEAKKVIQKMKENGFYPNVSTYGSFASGIALARKPGEALILWNEVKER 617
BLAST of NO04G03870 vs. NCBI_GenBank
Match: XP_004137961.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Cucumis sativus] >KGN58933.1 hypothetical protein Csa_3G736820 [Cucumis sativus]) HSP 1 Score: 79.0 bits (193), Expect = 8.900e-11 Identity = 90/365 (24.66%), Postives = 167/365 (45.75%), Query Frame = 0 Query: 184 YFTDALISSSHSLPLAEVQGVLQASSRAGDAEGALGLLQFLIGQSQERGGGAGPARMLLDEFLFFLVVKACCIEGDGGL---TVVKNTRALSAVAPLLGEMEGLGIAKSSFLYSAALKGY---GRMGWKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLLP-ALPRPDLYSYNIVL-RALCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLI----LESSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 Y +A+++ + + + V+ A GD E A ++Q + R G R+L D +L + E + L + + + PLL ++ + +S +Y+ +KGY GR+G R+ E ++ S D V+ +++ AL + G++DRA+++L EM R PA+ LK G + A + ++ A PD+ SYNI++ ++ +D GAL + +++ +GI P V+ TL+ ++G K A + L V + ++ LI G+ G I+EA+++++KM G P+V TY +L G + + G + +KE+ Sbjct: 275 YVLEAILAKDIPMCMTTLHSVVAAYVGFGDLETAEKVVQAM------REGKRDICRILRDGYLDEIEDVEDLNEDEDELFKKLLPNLNEEIDSEPPLLPKI----YSPNSRIYTTLMKGYMNEGRVGDTIRMLEAMRNQGDRSSH--PDHVSYTTVVSALVKAGSMDRARQVLAEMT--RIGCPANRITYNILLK-------GYCRLLQMDKAKDLFKEMVDGAGIEPDVVSYNIMIDGSILVDDSAGALGFFNEMRSKGIAPTKVSYTTLMKAFAQSGQPKLARKVFDEMLNDPRVKVDIVAWNMLIEGYCRLGWIEEAKQLVQKMKENGFFPDVSTYGSLANGISLARKPGEALLLWNEVKER 618
BLAST of NO04G03870 vs. NCBI_GenBank
Match: KDO36285.1 (hypothetical protein CISIN_1g007970mg [Citrus sinensis]) HSP 1 Score: 79.0 bits (193), Expect = 8.900e-11 Identity = 67/257 (26.07%), Postives = 120/257 (46.69%), Query Frame = 0 Query: 287 AKSSFLYSAALKGYGRMG-WKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLL-PALPRPDLYSYNIVLRA-LCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLI----LESSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 A +S +Y+ +KGY G D V +G ++ + D V +++ AL + G++DRA+++L EM R PA+ LK G + A E + + A PD+ SYNI++ + +D GAL+ + +++ GI P ++ TL+ + K A + L V + ++ L+ G+ G ++EA+ ++E+M G PNV TY +L G + + G + +KE+ Sbjct: 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT--RIGVPANRITYNILLK-------GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
BLAST of NO04G03870 vs. NCBI_GenBank
Match: PSR98199.1 (Pentatricopeptide repeat-containing protein [Actinidia chinensis var. chinensis]) HSP 1 Score: 79.0 bits (193), Expect = 8.900e-11 Identity = 68/255 (26.67%), Postives = 123/255 (48.24%), Query Frame = 0 Query: 289 SSFLYSAALKGYGRMG-WKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLLPALP-RPDLYSYNIVL-RALCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLI----LESSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 +S +Y+ +KGY + G KD V+ + ++ S + D V+ +++ AL + G+++RA+++L EM R PA+ LK G + A E + + PD+ SYN ++ + +D GAL + +++ GI P ++ TL+ +G K A + L+ V V ++ L+ G+ G I+EA++++E+M G PNV TY +L G A + G + +KE+ Sbjct: 379 NSRMYTTLMKGYMKGGRVKDTVKMLEAMRHQEDSASQPDHVSYTTVVSALVKVGSMERARQVLAEMT--RIGVPANRITYNILLK-------GYCQQLQMHKAKELKQEMTDCVGIEPDVVSYNTLIDGCILVDDSAGALGYFNEMRARGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLKDPRVKVDVVAWNMLVEGYCRLGLIEEAKKIVERMKENGSYPNVSTYGSLASGIAVARKPGEALLLWNEVKER 624
BLAST of NO04G03870 vs. NCBI_GenBank
Match: XP_006428878.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Citrus clementina] >XP_006480600.1 PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Citrus sinensis] >XP_015386535.1 PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Citrus sinensis] >ESR42118.1 hypothetical protein CICLE_v10011148mg [Citrus clementina]) HSP 1 Score: 78.6 bits (192), Expect = 1.200e-10 Identity = 67/257 (26.07%), Postives = 119/257 (46.30%), Query Frame = 0 Query: 287 AKSSFLYSAALKGYGRMG-WKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLL-PALPRPDLYSYNIVLRA-LCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLI----LESSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 A +S +Y+ +KGY G D V +G ++ D V +++ AL + G++DRA+++L EM R PA+ LK G + A E + + A PD+ SYNI++ + +D GAL+ + +++ GI P ++ TL+ + K A + L V + ++ L+ G+ G ++EA+ ++E+M G PNV TY +L G + + G + +KE+ Sbjct: 367 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDDASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT--RIGVPANRITYNILLK-------GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 614
BLAST of NO04G03870 vs. NCBI_GenBank
Match: KMZ64703.1 (putative Pentatricopeptide repeat-containing protein [Zostera marina]) HSP 1 Score: 78.6 bits (192), Expect = 1.200e-10 Identity = 68/263 (25.86%), Postives = 119/263 (45.25%), Query Frame = 0 Query: 290 SFLYSAALKGYGRMGWKDRVEEMGDEM-LEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLLPALPR-----PDLYSYNIVL-RALCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLILESSSVPASVE----GYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQGRKDP 542 S +Y+ +KGY + G D V + + M EK + D V +++ AL GA+DRA+ +LLEM G PA+ LK + V LL + + P++ SYNI++ + +D GAL + +++++GI P V+ TL+ K A + + V+ ++ LI G+ G +++A++++E M P+V TY +L G A + G + +KE+ + P Sbjct: 365 SRMYTTLMKGYMKEGRVDSVVHLIEAMRREKDPKSHPDQVTYTTVITALVNAGAMDRARSVLLEM--GHAGVPANRVTYNVLLK-----------GYCQQLQMDRVKELLEEMKKVKGIEPNVVSYNILIDGCIFVDDSAGALFYFNEMREQGINPSKVSYTTLMKAFALNNQPKLAQNVFDEMVKDRRVKVDRVAWNMLIEGYCRLGLVEDAKKLIEMMKESNFIPDVATYGSLANGIALARKPGEALLLWNEVKERCKSSP 614
BLAST of NO04G03870 vs. NCBI_GenBank
Match: XP_022145600.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic, partial [Momordica charantia]) HSP 1 Score: 78.6 bits (192), Expect = 1.200e-10 Identity = 71/257 (27.63%), Postives = 127/257 (49.42%), Query Frame = 0 Query: 289 SSFLYSAALKGY---GRMGWKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLLP-ALPRPDLYSYNIVL-RALCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLI----LESSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 +S +Y+ +KGY GR+ R+ E ++ S D V+ +++ AL + G++DRA+++L EM R PA+ LK G + A E + ++ A PD+ SYNI++ + +D GAL+ + +++ +GI P V+ TL+ ++G K A + L V A + ++ LI G+ G I+EA+++++KM G P+V TY +L G + + G + +KE+ Sbjct: 173 NSRIYTTLMKGYMNEGRVADTMRMLEAMRHQDDRSSH--PDHVSYTTVVSALVKTGSMDRARQVLAEMT--RIGCPANRITYNILLK-------GYCRLLQMDKAKELLKEMVDGAGIEPDVVSYNILIDGCILVDDSAGALAFFNEMRSKGIAPTKVSYTTLMKAFAQSGQPKLARKVFDEMLNDPRVKADIVAWNMLIEGYCRLGLIEEAKQLVQKMKESGFFPDVSTYGSLANGISLARKPGEALLLWNEVKER 418
BLAST of NO04G03870 vs. NCBI_GenBank
Match: GAY69399.1 (hypothetical protein CUMW_271650 [Citrus unshiu]) HSP 1 Score: 78.6 bits (192), Expect = 1.200e-10 Identity = 67/257 (26.07%), Postives = 119/257 (46.30%), Query Frame = 0 Query: 287 AKSSFLYSAALKGYGRMG-WKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLL-PALPRPDLYSYNIVLRA-LCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLI----LESSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 A +S +Y+ +KGY G D V +G ++ D V +++ AL + G++DRA+++L EM R PA+ LK G + A E + + A PD+ SYNI++ + +D GAL+ + +++ GI P ++ TL+ + K A + L V + ++ L+ G+ G ++EA+ ++E+M G PNV TY +L G + + G + +KE+ Sbjct: 126 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDDASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT--RIGVPANRITYNILLK-------GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 373
BLAST of NO04G03870 vs. NCBI_GenBank
Match: GAU26737.1 (hypothetical protein TSUD_317350 [Trifolium subterraneum]) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-10 Identity = 67/252 (26.59%), Postives = 121/252 (48.02%), Query Frame = 0 Query: 292 LYSAALKGYGRMG-WKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLL-PALPRPDLYSYNIVLR-ALCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLILE----SSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 +Y+ +KGY + G D V + + S D V+ +++ AL + G +DRA ++L EM R S PA+ LK G + A E + + A +PD+ SYNI++ + +D GALS + +++ +GI P ++ TL+ +G K A + + + V + ++ L+ G++ G ++EA++V++KM G P+V TY + G A + G + +KE+ Sbjct: 375 IYTTLMKGYMKAGRVTDTVRMLEAMRCQDDSASHPDHVSYTTVVSALVKAGFMDRACEVLAEMT--RISVPANRITYNILLK-------GYCKQLQMDTARELLKEMAEDAGIQPDVVSYNILINGCILVDDSAGALSFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLAQRVFDEMANDTRVRVDLIAWNMLVEGYSRLGLVEEAKKVIQKMKENGFYPDVSTYGSFASGIALARKPGEALILWNEVKER 617
BLAST of NO04G03870 vs. NCBI_GenBank
Match: XP_008442644.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Cucumis melo]) HSP 1 Score: 77.8 bits (190), Expect = 2.000e-10 Identity = 70/257 (27.24%), Postives = 126/257 (49.03%), Query Frame = 0 Query: 289 SSFLYSAALKGY---GRMGWKDRVEEMGDEMLEKRSEVKVDLVAMNSLLDALARCGAVDRAQKILLEMARGRRSAPASEAAVATSLKTNVGEKLGAGPSVAYAAAAEAVPVLLP-ALPRPDLYSYNIVL-RALCPNDLGGALSLYRDLKQEGIQPDAVTINTLVAGCVKTGNLKRALLI----LESSSVPASVEGYSALIGGFAARGKIKEAQEVLEKMVNGGLKPNVRTYTALLQGAAAVGEMGLVFETFGMMKEQ 537 +S +Y+ +KGY GR+ R+ E ++ S D V+ +++ AL + G++DRA+++L EM R PA+ LK G + A E + ++ A PD+ SYNI++ ++ +D GAL + +++ +GI P V+ TL+ ++G K A + L V + ++ LI G+ G I+EA+++++KM G P+V TY +L G + + G + +KE+ Sbjct: 373 NSRIYTTLMKGYMNEGRVADTIRMLEAMRNQGDRSSH--PDHVSYTTVVSALVKAGSMDRARQVLAEMT--RIGCPANRITYNIILK-------GYCRLLQMDKAKELLKEMVDGAGIEPDVVSYNIMIDGSILVDDSAGALGFFNEMRSKGIAPTKVSYTTLMKAFAQSGQPKLARKVFDEMLNDPRVKVDIVAWNMLIEGYCRLGLIEEAKQLIQKMKENGFFPDVSTYGSLANGISLARKPGEALLLWNEVKER 618 The following BLAST results are available for this feature:
BLAST of NO04G03870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03870 ID=NO04G03870|Name=NO04G03870|organism=Nannochloropsis oceanica|type=gene|length=3391bpback to top protein sequence of NO04G03870.1 >NO04G03870.1-protein ID=NO04G03870.1-protein|Name=NO04G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=931bpback to top Synonyms
Publications
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