NO04G03860, NO04G03860 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03860 vs. NCBI_GenBank
Match: XP_002673162.1 (predicted protein [Naegleria gruberi] >EFC40418.1 predicted protein [Naegleria gruberi]) HSP 1 Score: 70.1 bits (170), Expect = 4.200e-8 Identity = 59/249 (23.69%), Postives = 111/249 (44.58%), Query Frame = 0 Query: 544 FVVGVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAWT-DASYSILASLNMGWLNPSILVHGLPQSGEVAK--GAYHYYQLRIPPVAADAVQPVIRLTLLPEDESDQDLYITFSRDKEPGKDSYDVRSASWSDNDEVVLVPGAEHYCTDCTLYVAVYGY 790 + +GV G +EF ++A T + + L DG Y+Y+ + D T+T+TPL+GDPD Y+ P +PS + W+S + + V++ +PD T ++ ++A++ D YS++ + N + S L+HG+ G V +Y+ ++L P V P+ L D D++++ + D D ++S + + + + + Y+AV GY Sbjct: 1217 YYIGVCGLNDGITEFSIIASTSNNPIKLKDGQPQLMTTKTLDYSYFTFDLEGSD-DFTVTVTPLTGDPDAYLSTNP--KPSTFSFMWSSEQSAVEIINVKS--SDNQFKPDVT------YHLSIFAFSADTIYSVVITRN---TSISTLMHGVSMGGRVQSPYSSYYRFKLTHPSNVTITVNPLNSL-------GDPDIFVS-THDNNQYPDFLHHDFYAFSRSVDTLTIKTTDQGWRMGWYYIAVAGY 1443
BLAST of NO04G03860 vs. NCBI_GenBank
Match: WP_066059861.1 (hypothetical protein [Halioglobus sp. HI00S01] >KZX50342.1 hypothetical protein A3709_11345 [Halioglobus sp. HI00S01]) HSP 1 Score: 70.1 bits (170), Expect = 4.200e-8 Identity = 90/391 (23.02%), Postives = 162/391 (41.43%), Query Frame = 0 Query: 529 QCGQGQGGESKEACYF------VVGVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAWTD-ASYSILASLNMGWLNPSILVHGLPQSGEVAKGAYHYYQLRIPPVAADAVQPVIRLTLLPEDESDQDLYITFSRDKEPGKDSYDV---RSASWSDNDEVVLVPGAEHYCTDCTLYVAVYGYEGGPYSLVATLTSTQ----QQLQLGVPVRGTVAASSSVFYFVDWHSENDDGSSISTNSSSSDLIITLTPEAGRPRVYA-SCSHAYPNATAHGWMLDSREDQNLHVNSSSAAPGAAGIGER 905 QC G E+C V + R + SS F+L A+ V L + R VA S+++YKI D+ +++ ++ D D+YV +P+ N + + + G L + ++ P +++GV + AS++I A + P++L + +P VA+GA+ YY++ A + +RL L ++D DLY+ + P ++D R+ + +D+ V L G + + VYG+ Y L ATL S Q Q+ G V TV + +Y + E S+ + ++D + + P + A SC+ P + + + Q+ + + GA G R Sbjct: 94 QCRPYLGSTLAESCVLNLNQRRTVFIGVRGYQSSSFKLRAQVIQPVVQLQENRGRRGNVAANSWSFYKITAAG---DMKISVFNMTADVDVYVRRG--RKPNLNNFSCFTNNAG---LAAEVCRMRNGPNPQ-------TLFVGVRGKSSRASFTIKAKQETTF-TPTVLSNDVPVYNSVAQGAWRYYRI------AGTGRLDVRLDNL---DADADLYVK-KGNNPPSTSNFDCQSSRAGTEADSCNVTLSGGQ-------SAIIGVYGFRAANYRLRATLPSFQPGAPTQIYSGQVVSNTVTQDNWRYYRITGSGE----LSVDLYNLTADADLYVRKGNTNPTISAYSCASNNPGSISDSCSVTLSNGQSAIIGVKGFSSGATGYSLR 447
BLAST of NO04G03860 vs. NCBI_GenBank
Match: PIK55167.1 (hypothetical protein BSL78_07897 [Apostichopus japonicus]) HSP 1 Score: 67.4 bits (163), Expect = 2.700e-7 Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 0 Query: 574 GMAVRDQVAG-KSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAW---------TDASYSILA-SLNMGWLNPSILVHGLPQSGEVAKGAYHYYQLRIPPVAAD 720 G ++ DQ A Y YY I V +P DL + IT SG+P++YVG P P TW+S ++G++ L + + +P+ T+G YIGV+++ DA Y IL S+ + I + G S + YHYY+ +P D Sbjct: 33 GESLTDQHASCMEYTYYSIEVADPCKDLRVKITQKSGEPNVYVGKSPNRYPHYLTLTWSSYNWGSEDLVISS------WDPEFTVG---TYYIGVHSFCSEEVHSGDNDARYDILVESVETTHPHSEIGLDG-EISSNLDSNGYHYYRFCVPDTCTD 179
BLAST of NO04G03860 vs. NCBI_GenBank
Match: XP_002675208.1 (predicted protein [Naegleria gruberi] >EFC42464.1 predicted protein [Naegleria gruberi]) HSP 1 Score: 66.6 bits (161), Expect = 4.600e-7 Identity = 120/562 (21.35%), Postives = 200/562 (35.59%), Query Frame = 0 Query: 81 TYRYFEIASTGHTSQDLIVTATPLGGDVDLYMSVKNDLPFPDHERFEWSSTHLGTDSLVIAEEDPKNXXXXXXXXXXXXXXXCTYRVGVYGYIGGGFTLLARWNSSEPVPLELGRPQSDSVTTGTSRQYSFNLSPGALSGGGRDASTGATPVVDLEVLLQPLD--GDPDVYVTLDGKRPTTEHYQYRSTDFGSTADRIVMGPHDSFFQRYCPGGRCLVRVAVVGF-HDASYSLMLSALSAPIRLQLDRPVATTLRPALAQRFTLPWPEGGATGVVGSLRITISPQSGPIPRVYASCRTAWPNVTVNDWKWEENSAHPSPTLVIDTAMGEGKGCGVGENLTLAVVADSLALVSVFVSTDAVGTMPRLLPGVQTP-GEARKNDVSYFGVRMGKDEYADIELILTVTSGEADMYVS-DSYVRRPVVDAANGVVTSYTLSSAH-DGDDRLTIQHSMFSQCGQGQGGESKEACYFVVGVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFG 637 TY YF + + +L ++ TP+ GD D+++S + +P +EWSS G D + I + N Y +GVY Y FT++AR S V L G D + Y +N L + L PL GDPD+Y+ G PT Y Y G+ A I + + V G+ D Y ++++ A A L L + + + +T+ SG + YAS P K++ + I+ + + ++ AV S A S+ +ST+ V + L+ G KN +F + +D+ + + G+ D+YVS + Y P D SY+ + H +D L +K F + V G + S+ F ++A + TV L D ++ V + Y YK V +L +++ P S + +P+ ++ S FG Sbjct: 165 TYTYFRLELPHLLATNLSISVTPIDGDPDIFVS--SQTQYPTSNNYEWSSRSYGFDIVNIQHDTQMN-------------PGLVYWIGVYAYNDVHFTIVAR-QSETAVRLPEGHAVGDLIEADQMEYYVYN----------------NLQFQRLLISLIPLTSRGDPDLYIKF-GSVPTLTDYDYSQRSMGNDAFEIEKASSQLGY----------YYIGVHGYARDTKYRILVTTEEANTVCADGVSYAGRLLTN-----ELNYYKFSHADTESRVTVTVKVYSGAVTLYYASHSRPTPQ------KYDRMEVLQAGEQTINMMLP-----AIVQDYFFAVHGVSNADYSIIISTNQVPS--PLVDGYAIYWARVPKNYYRHFYFEADDFDTSDVSITVDPRLGDVDLYVSTEDYF--PTKDNYTWSSNSYSKDTVHIAANDPL-----------------AKGKKLFRISVFGFQ-ESNFFTIIAMQTNTTVILLDDVSTPGTVTRRDYITYKYNVEGTS-NLRVSVQPTSEGSVTVFWSRTNPKPNMFHNDGTSDDFG 644
BLAST of NO04G03860 vs. NCBI_GenBank
Match: CEL93364.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 66.2 bits (160), Expect = 6.000e-7 Identity = 52/211 (24.64%), Postives = 86/211 (40.76%), Query Frame = 0 Query: 520 LTIQHSMFSQCGQGQGGESKEACYFVV--GVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNP-----QLDLTLTITPLSGDPDLYVGAPPLTRPSRE--NHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAWTDA----------SYSILASLNMGWLNPSILVHGLPQSGEVAKGAYHYYQL 712 L H ++ + + Y +V GR+ ++F + A+ D V L +G V Q Y YK+ V P + L +++ P+SGDPD++V P R+ +H+W G D + + + P+ G +YIG+ + S S L ++N G + S L GLP G V + Y+L Sbjct: 610 LNATHPVYQDALRSTPADDNPTLYVMVVPASPGRQETMNKFSITARAEDTVVELQNGATVSGQTRAHHYDRYKVYVPEPVNRHETVQLQVSVVPISGDPDVFVSNASSPYPDRDPHHHSWMGELEGGDQIVISST--------SPSFSFGW-LYIGITCDESSSDSTGVPAGGSSSYLVTVNWGH-STSQLWDGLPLQGAVTENDQRVYEL 810 The following BLAST results are available for this feature:
BLAST of NO04G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 15
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03860 ID=NO04G03860|Name=NO04G03860|organism=Nannochloropsis oceanica|type=gene|length=3158bpback to top protein sequence of NO04G03860.1 >NO04G03860.1-protein ID=NO04G03860.1-protein|Name=NO04G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=935bpback to top Synonyms
Publications
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