NO04G03860, NO04G03860 (gene) Nannochloropsis oceanica

Overview
NameNO04G03860
Unique NameNO04G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3158
Alignment locationchr4:1038850..1042007 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1038850..1042007 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G03860 vs. NCBI_GenBank
Match: XP_002673162.1 (predicted protein [Naegleria gruberi] >EFC40418.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 70.1 bits (170), Expect = 4.200e-8
Identity = 59/249 (23.69%), Postives = 111/249 (44.58%), Query Frame = 0
Query:  544 FVVGVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAWT-DASYSILASLNMGWLNPSILVHGLPQSGEVAK--GAYHYYQLRIPPVAADAVQPVIRLTLLPEDESDQDLYITFSRDKEPGKDSYDVRSASWSDNDEVVLVPGAEHYCTDCTLYVAVYGY 790
            + +GV G     +EF ++A T +  + L DG           Y+Y+   +     D T+T+TPL+GDPD Y+   P  +PS  +  W+S     + + V++       +PD T       ++ ++A++ D  YS++ + N    + S L+HG+   G V     +Y+ ++L  P      V P+  L        D D++++ + D     D       ++S + + + +   +        Y+AV GY
Sbjct: 1217 YYIGVCGLNDGITEFSIIASTSNNPIKLKDGQPQLMTTKTLDYSYFTFDLEGSD-DFTVTVTPLTGDPDAYLSTNP--KPSTFSFMWSSEQSAVEIINVKS--SDNQFKPDVT------YHLSIFAFSADTIYSVVITRN---TSISTLMHGVSMGGRVQSPYSSYYRFKLTHPSNVTITVNPLNSL-------GDPDIFVS-THDNNQYPDFLHHDFYAFSRSVDTLTIKTTDQGWRMGWYYIAVAGY 1443          
BLAST of NO04G03860 vs. NCBI_GenBank
Match: WP_066059861.1 (hypothetical protein [Halioglobus sp. HI00S01] >KZX50342.1 hypothetical protein A3709_11345 [Halioglobus sp. HI00S01])

HSP 1 Score: 70.1 bits (170), Expect = 4.200e-8
Identity = 90/391 (23.02%), Postives = 162/391 (41.43%), Query Frame = 0
Query:  529 QCGQGQGGESKEACYF------VVGVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAWTD-ASYSILASLNMGWLNPSILVHGLPQSGEVAKGAYHYYQLRIPPVAADAVQPVIRLTLLPEDESDQDLYITFSRDKEPGKDSYDV---RSASWSDNDEVVLVPGAEHYCTDCTLYVAVYGYEGGPYSLVATLTSTQ----QQLQLGVPVRGTVAASSSVFYFVDWHSENDDGSSISTNSSSSDLIITLTPEAGRPRVYA-SCSHAYPNATAHGWMLDSREDQNLHVNSSSAAPGAAGIGER 905
            QC    G    E+C         V +  R + SS F+L A+     V L +    R  VA  S+++YKI       D+ +++  ++ D D+YV      +P+  N +  + + G   L  +   ++    P         +++GV   +  AS++I A     +  P++L + +P    VA+GA+ YY++      A   +  +RL  L   ++D DLY+    +  P   ++D    R+ + +D+  V L  G        +  + VYG+    Y L ATL S Q     Q+  G  V  TV   +  +Y +    E     S+   + ++D  + +      P + A SC+   P + +    +     Q+  +     + GA G   R
Sbjct:   94 QCRPYLGSTLAESCVLNLNQRRTVFIGVRGYQSSSFKLRAQVIQPVVQLQENRGRRGNVAANSWSFYKITAAG---DMKISVFNMTADVDVYVRRG--RKPNLNNFSCFTNNAG---LAAEVCRMRNGPNPQ-------TLFVGVRGKSSRASFTIKAKQETTF-TPTVLSNDVPVYNSVAQGAWRYYRI------AGTGRLDVRLDNL---DADADLYVK-KGNNPPSTSNFDCQSSRAGTEADSCNVTLSGGQ-------SAIIGVYGFRAANYRLRATLPSFQPGAPTQIYSGQVVSNTVTQDNWRYYRITGSGE----LSVDLYNLTADADLYVRKGNTNPTISAYSCASNNPGSISDSCSVTLSNGQSAIIGVKGFSSGATGYSLR 447          
BLAST of NO04G03860 vs. NCBI_GenBank
Match: PIK55167.1 (hypothetical protein BSL78_07897 [Apostichopus japonicus])

HSP 1 Score: 67.4 bits (163), Expect = 2.700e-7
Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 0
Query:  574 GMAVRDQVAG-KSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAW---------TDASYSILA-SLNMGWLNPSILVHGLPQSGEVAKGAYHYYQLRIPPVAAD 720
            G ++ DQ A    Y YY I V +P  DL + IT  SG+P++YVG  P   P     TW+S ++G++ L + +       +P+ T+G     YIGV+++          DA Y IL  S+     +  I + G   S  +    YHYY+  +P    D
Sbjct:   33 GESLTDQHASCMEYTYYSIEVADPCKDLRVKITQKSGEPNVYVGKSPNRYPHYLTLTWSSYNWGSEDLVISS------WDPEFTVG---TYYIGVHSFCSEEVHSGDNDARYDILVESVETTHPHSEIGLDG-EISSNLDSNGYHYYRFCVPDTCTD 179          
BLAST of NO04G03860 vs. NCBI_GenBank
Match: XP_002675208.1 (predicted protein [Naegleria gruberi] >EFC42464.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 66.6 bits (161), Expect = 4.600e-7
Identity = 120/562 (21.35%), Postives = 200/562 (35.59%), Query Frame = 0
Query:   81 TYRYFEIASTGHTSQDLIVTATPLGGDVDLYMSVKNDLPFPDHERFEWSSTHLGTDSLVIAEEDPKNXXXXXXXXXXXXXXXCTYRVGVYGYIGGGFTLLARWNSSEPVPLELGRPQSDSVTTGTSRQYSFNLSPGALSGGGRDASTGATPVVDLEVLLQPLD--GDPDVYVTLDGKRPTTEHYQYRSTDFGSTADRIVMGPHDSFFQRYCPGGRCLVRVAVVGF-HDASYSLMLSALSAPIRLQLDRPVATTLRPALAQRFTLPWPEGGATGVVGSLRITISPQSGPIPRVYASCRTAWPNVTVNDWKWEENSAHPSPTLVIDTAMGEGKGCGVGENLTLAVVADSLALVSVFVSTDAVGTMPRLLPGVQTP-GEARKNDVSYFGVRMGKDEYADIELILTVTSGEADMYVS-DSYVRRPVVDAANGVVTSYTLSSAH-DGDDRLTIQHSMFSQCGQGQGGESKEACYFVVGVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNPQLDLTLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFG 637
            TY YF +      + +L ++ TP+ GD D+++S  +   +P    +EWSS   G D + I  +   N                 Y +GVY Y    FT++AR  S   V L  G    D +       Y +N                      L + L PL   GDPD+Y+   G  PT   Y Y     G+ A  I        +            + V G+  D  Y ++++   A          A  L         L + +         + +T+   SG +   YAS     P       K++      +    I+  +       + ++   AV   S A  S+ +ST+ V +   L+ G         KN   +F       + +D+ + +    G+ D+YVS + Y   P  D       SY+  + H   +D L                 +K    F + V G +  S+ F ++A   + TV L D ++    V  + Y  YK  V     +L +++ P S        +    +P+  ++   S  FG
Sbjct:  165 TYTYFRLELPHLLATNLSISVTPIDGDPDIFVS--SQTQYPTSNNYEWSSRSYGFDIVNIQHDTQMN-------------PGLVYWIGVYAYNDVHFTIVAR-QSETAVRLPEGHAVGDLIEADQMEYYVYN----------------NLQFQRLLISLIPLTSRGDPDLYIKF-GSVPTLTDYDYSQRSMGNDAFEIEKASSQLGY----------YYIGVHGYARDTKYRILVTTEEANTVCADGVSYAGRLLTN-----ELNYYKFSHADTESRVTVTVKVYSGAVTLYYASHSRPTPQ------KYDRMEVLQAGEQTINMMLP-----AIVQDYFFAVHGVSNADYSIIISTNQVPS--PLVDGYAIYWARVPKNYYRHFYFEADDFDTSDVSITVDPRLGDVDLYVSTEDYF--PTKDNYTWSSNSYSKDTVHIAANDPL-----------------AKGKKLFRISVFGFQ-ESNFFTIIAMQTNTTVILLDDVSTPGTVTRRDYITYKYNVEGTS-NLRVSVQPTSEGSVTVFWSRTNPKPNMFHNDGTSDDFG 644          
BLAST of NO04G03860 vs. NCBI_GenBank
Match: CEL93364.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 66.2 bits (160), Expect = 6.000e-7
Identity = 52/211 (24.64%), Postives = 86/211 (40.76%), Query Frame = 0
Query:  520 LTIQHSMFSQCGQGQGGESKEACYFVV--GVVGRKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNP-----QLDLTLTITPLSGDPDLYVGAPPLTRPSRE--NHTWASRSFGADSLTVQAVGLKKHCEPDPTIGLGCAIYIGVYAWTDA----------SYSILASLNMGWLNPSILVHGLPQSGEVAKGAYHYYQL 712
            L   H ++    +    +     Y +V     GR+   ++F + A+  D  V L +G  V  Q     Y  YK+ V  P      + L +++ P+SGDPD++V       P R+  +H+W     G D + + +          P+   G  +YIG+     +          S S L ++N G  + S L  GLP  G V +     Y+L
Sbjct:  610 LNATHPVYQDALRSTPADDNPTLYVMVVPASPGRQETMNKFSITARAEDTVVELQNGATVSGQTRAHHYDRYKVYVPEPVNRHETVQLQVSVVPISGDPDVFVSNASSPYPDRDPHHHSWMGELEGGDQIVISST--------SPSFSFGW-LYIGITCDESSSDSTGVPAGGSSSYLVTVNWGH-STSQLWDGLPLQGAVTENDQRVYEL 810          
The following BLAST results are available for this feature:
BLAST of NO04G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
XP_002673162.14.200e-823.69predicted protein [Naegleria gruberi] >EFC40418.1 ... [more]
WP_066059861.14.200e-823.02hypothetical protein [Halioglobus sp. HI00S01] >KZ... [more]
PIK55167.12.700e-731.21hypothetical protein BSL78_07897 [Apostichopus jap... [more]
XP_002675208.14.600e-721.35predicted protein [Naegleria gruberi] >EFC42464.1 ... [more]
CEL93364.16.000e-724.64unnamed protein product [Vitrella brassicaformis C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03860.1NO04G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03860.1NO04G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03860 ID=NO04G03860|Name=NO04G03860|organism=Nannochloropsis oceanica|type=gene|length=3158bp
ATGCCCGCAAAGGGATGGCTCTTTTCGCCGCCATTAGCGCTGAAGCTAGT
GCAACCGTCCGTAAAGGGGGGGATAAAGTCCAGTCGTGGAAAATTCGGAG
CTGCTGCTGGCAGGAGGAAGCTGCACCTACTTGTCGTTGCACTGCTGCTG
GGCCTCTGTGCGCACGTGATCCACGCAGATGATCCAGTTGTGACAGTGCT
GGTCCCGGGCGAGGTTGTAGAAGGTGCCTTGGCGTCCAAGgtacattggt
ctggacaggccaggaaggtttgggggttggaagggaggaagtcgagcctg
gcttgcaaggtatttgacagcacgccgctcagtcctcattgcttgagcgg
catcgcttcaacaaggccagacacatctttctagttccctccataaattc
cttacaccttcctttcctcctttcctcctttctcccttcctgcacagACG
TACCGCTACTTTGAAATCGCCAGCACCGGACACACTTCCCAAGATCTGAT
TGTGACCGCCACACCATTAGGCGGGGACGTTGATCTCTATATGTCTGTGA
AGAACGATCTTCCCTTCCCCGACCACGAGCGATTCGAGTGGTCCTCCACC
CACCTAGGGACGGACTCCCTCGTGATTGCTGAGGAGGATCCCAAGAACTG
CCGACACCAGCAGCAGCAGCAGCAGAAGCAGCAGGGAGGTGGGTGTACGT
ACCGTGTGGGAGTTTACGGGTATATTGGAGGTGGTTTTACCTTGCTGGCG
AGGTGGAATAGCTCCGAGCCTGTCCCTCTCGAGTTGGGAAGGCCGCAGAG
TGATAGCGTCACGACAGGGACTTCTCGCCAGTACAGTTTTAATTTATCCC
CCGGGGCGTTGTCGGGGGGAGGGAGGGACGCCAGCACGGGGGCAACGCCA
GTGGTGGACTTGGAAGTGCTGCTTCAGCCCCTTGACGGAGATCCGGATGT
GTATGTGACGTTGGATGGGAAGAGGCCGACGACCGAGCATTACCAGTATC
GAAGCACGGATTTTGGTTCGACGGCTGATAGGATTGTGATGGGTCCGCAT
GATTCTTTCTTTCAGCGATACTGCCCGGGAGGACGGTGCTTGGTGAGAGT
GGCAGTGGTTGGATTTCATGATGCCAGTTACTCGCTGATGCTTTCGGCCT
TGTCTGCGCCAATTCGACTGCAGCTGGATCGGCCGGTTGCGACTACACTG
AGGCCGGCGCTCGCACAACGGTTTACACTGCCTTGGCCAGAGGGAGGGGC
GACAGGAGTGGTGGGAAGTCTGAGGATAACGATATCGCCACAGTCAGGGC
CAATACCACGCGTGTATGCGTCATGTAGGACGGCTTGGCCGAATGTGACC
GTCAATGATTGGAAGTGGGAGGAGAATTCGGCACATCCGTCGCCGACCTT
GGTGATAGATACTGCCATGGGTGAGGGGAAGGGATGTGGGGTTGGGGAAA
ACTTGACGCTTGCCGTGGTTGCAGACTCGCTCGCGTTGGTAAGTGTGTTT
GTATCGACAGATGCTGTTGGGACGATGCCTCGGTTGTTGCCCGGGGTGCA
AACGCCGGGGGAGGCGAGGAAAAATGATGTATCGTATTTTGGGGTGCGGA
TGGGGAAGGACGAATATGCTGATATAGAGTTGATTCTGACGGTGACGAGT
GGGGAGGCCGACATGTACGTAAGTGACAGTTACGTGCGACGGCCCGTGGT
GGATGCAGCCAACGGGGTGGTGACTAGCTATACCCTGAGTTCGGCGCATG
ACGGGGACGACCGGTTGACAATTCAGCACTCGATGTTCTCGCAGTGTGGA
CAAGGACAGGGGGGAGAAAGCAAGGAGGCGTGTTATTTTGTGGTGGGCGT
CGTCGGGAGGAAGTGGGCCAGCAGTGAATTTCGCTTGCTTGCCAAGACGC
GTGATGCCACTGTGACTCTCCATGATGGCATGGCTGTGCGAGATCAAGTG
GCAGGGAAAAGCTACGCGTACTACAAAATCCTAGTAGTGAATCCGCAACT
CGATCTCACTCTAACCATTACGCCATTGAGTGGCGATCCTGATTTGTATG
TCGGCGCCCCCCCGTTGACGAGGCCCTCGAGAGAAAACCACACTTGGGCG
AGTCGGAGCTTTGGCGCGGATTCTTTGACGGTGCAAGCGGTGGGACTTAA
GAAACACTGCGAGCCTGACCCGACGATTGGATTGGGCTGTGCGATATATA
TAGGGGTATATGCTTGGACAGATGCAAGCTATTCAATTCTGGCATCGTTG
AACATGGGATGGgtaagtggtgggggagggagcgaggaggggaaggaaag
gtttgtttttttgccgctcttttagtcatgacgtaaagcttgcgggaaat
tcatatgtttttaacttattatattgtacttacaacccttttccatcttc
ccctacagCTTAACCCCTCTATCCTGGTCCATGGCTTGCCTCAAAGCGGC
GAGGTTGCAAAGGGCGCGTACCACTACTACCAACTCCGCATTCCCCCCGT
CGCTGCTGATGCTGTCCAGCCCGTCATACGCTTGACGTTATTACCCGAAG
ATGAGTCCGACCAAGATTTATACATCACTTTTTCTCGAGACAAAGAACCG
GGCAAGGATAGTTATGACGTGCGATCGGCCTCTTGGAGTGATAATGACGA
GGTTGTGCTTGTTCCGGGTGCGGAGCATTACTGTACCGACTGCACCTTGT
ATGTGGCTGTGTATGGGTATGAGGGAGGGCCTTATTCCTTGGTGGCTACG
CTGACAAGCACACAGCAGCAGCTGCAGTTGGGTGTGCCGGTCCGTGGGAC
GGTGGCGGCGTCAAGCTCTGTGTTCTATTTTGTGGATTGGCATTCGGAGA
ACGACGACGGCAGCAGCATCAGCACCAACAGTAGCAGCAGTGATTTGATA
ATCACCTTAACCCCGGAAGCGGGTCGCCCTCGGGTGTATGCGTCCTGTTC
TCATGCGTATCCCAACGCCACGGCACATGGCTGGATGCTCGACAGTCGGG
AAGACCAGAACTTGCATGTCAATTCGTCCTCGGCAGCCCCAGGAGCAGCA
GGGATAGGAGAGAGGGAGGGTCCTTGTCGGCGTCCGGGCAAGTTGTGGTT
GGCGGTGGCAAGTAATGGAAACGGAGGAGGGGGGGTGGAGCGGCGTCGTA
CAGTCTGA
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protein sequence of NO04G03860.1

>NO04G03860.1-protein ID=NO04G03860.1-protein|Name=NO04G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=935bp
MPAKGWLFSPPLALKLVQPSVKGGIKSSRGKFGAAAGRRKLHLLVVALLL
GLCAHVIHADDPVVTVLVPGEVVEGALASKTYRYFEIASTGHTSQDLIVT
ATPLGGDVDLYMSVKNDLPFPDHERFEWSSTHLGTDSLVIAEEDPKNCRH
QQQQQQKQQGGGCTYRVGVYGYIGGGFTLLARWNSSEPVPLELGRPQSDS
VTTGTSRQYSFNLSPGALSGGGRDASTGATPVVDLEVLLQPLDGDPDVYV
TLDGKRPTTEHYQYRSTDFGSTADRIVMGPHDSFFQRYCPGGRCLVRVAV
VGFHDASYSLMLSALSAPIRLQLDRPVATTLRPALAQRFTLPWPEGGATG
VVGSLRITISPQSGPIPRVYASCRTAWPNVTVNDWKWEENSAHPSPTLVI
DTAMGEGKGCGVGENLTLAVVADSLALVSVFVSTDAVGTMPRLLPGVQTP
GEARKNDVSYFGVRMGKDEYADIELILTVTSGEADMYVSDSYVRRPVVDA
ANGVVTSYTLSSAHDGDDRLTIQHSMFSQCGQGQGGESKEACYFVVGVVG
RKWASSEFRLLAKTRDATVTLHDGMAVRDQVAGKSYAYYKILVVNPQLDL
TLTITPLSGDPDLYVGAPPLTRPSRENHTWASRSFGADSLTVQAVGLKKH
CEPDPTIGLGCAIYIGVYAWTDASYSILASLNMGWLNPSILVHGLPQSGE
VAKGAYHYYQLRIPPVAADAVQPVIRLTLLPEDESDQDLYITFSRDKEPG
KDSYDVRSASWSDNDEVVLVPGAEHYCTDCTLYVAVYGYEGGPYSLVATL
TSTQQQLQLGVPVRGTVAASSSVFYFVDWHSENDDGSSISTNSSSSDLII
TLTPEAGRPRVYASCSHAYPNATAHGWMLDSREDQNLHVNSSSAAPGAAG
IGEREGPCRRPGKLWLAVASNGNGGGGVERRRTV*
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Synonyms
Publications