NO04G03400, NO04G03400 (gene) Nannochloropsis oceanica

Overview
NameNO04G03400
Unique NameNO04G03400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1794
Alignment locationchr4:935032..936825 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:935032..936825 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G03400 vs. NCBI_GenBank
Match: GAX21833.1 (hypothetical protein FisN_30Hh033 [Fistulifera solaris])

HSP 1 Score: 83.6 bits (205), Expect = 1.900e-12
Identity = 63/186 (33.87%), Postives = 92/186 (49.46%), Query Frame = 0 
Query:  321 ELPIPSET--VVSLSDIATKFDDAIMTDQAKSLPTLAELGKKAKGSILKRQQEEEEKVAKELEPLDDYDLS----------AAILGEGRPVLGIGLPY--LQSCHTVVILVTLLCAFVEFPGFPLTNFPYELREFLKQGLIVIYAINAVLAWDSIKEAKKREQSVFFWALKCFVLGALAHNELLSI 493
            E P+PS T   + L DI       ++ ++   +    EL K      +KR          E +P  D D S          +A+LGE R    IG+P   +Q  H +  L  LL AFVE+PGFPLTN P  LR  L+ GL ++Y IN VLA  +  +A++R Q +  W  K + +G LA+++L  +
Sbjct:  127 ERPVPSTTDAAIPLPDIKEARQKKLLEEELARMEEEKELSKPK----IKRSDRAAFMKLLEQQPFSDADDSLFEEEEYTTISALLGE-RSAKFIGIPAGPIQVGHFIGALGILLMAFVEYPGFPLTNLPTPLRGALQGGLGIVYGINTVLAVAAAFQARQRGQPIPLWVAKTWAVGGLAYDQLTQL 307
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BLAST of NO04G03400 vs. NCBI_GenBank
Match: OEU16556.1 (hypothetical protein FRACYDRAFT_239151 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.4 bits (202), Expect = 4.300e-12
Identity = 49/138 (35.51%), Postives = 78/138 (56.52%), Query Frame = 0 
Query:  357 LGKKAKGSILKRQQEEEEKVAKE-LEPLDDYDLSAAILGE-GRPVLGIGLPYLQSCHTVVILVTLLCAFVEFPGFPLTNFPYELREFLKQGLIVIYAINAVLAWDSIKEAKKREQSVFFWALKCFVLGALAHNELLSI 493
            + ++ K ++LK  +++    A E      +Y   +A+LGE  +P +GI    LQ  H +  LV +L AF+E+PGFPLTN P  +R  L+ GL  +Y IN +LA  ++ +A +R Q    W  K F +G LA ++L  +
Sbjct:  206 IDRRDKVALLKLLEQDPYADADESFFEEQEYTFVSALLGERAKPFMGIPTGPLQVGHFIGALVIVLMAFIEYPGFPLTNLPSPIRGALQGGLGTVYGINVILAIVAVFKAGERGQPALLWIAKVFTVGGLAFDQLTQL 343
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BLAST of NO04G03400 vs. NCBI_GenBank
Match: KOO53830.1 (hypothetical protein Ctob_015485 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 81.3 bits (199), Expect = 9.600e-12
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 0 
Query:  379 ELEPLDDYDLSAAILGEGRP--VLGIGLPYLQSCHTVVILVTLLCAFVEFPGFPLTNFPYELREFLKQGLIVIYAINAVLAWDSIKEAKKREQSVFFWALKCFVLGALAHNEL 490
            E+   + YD +A ++G G P       LPYLQS H +++ V LL + + +PGFPLT  P   R  L QGL ++ AIN+  A  +   A  +++ V FW LKC V G LA  EL
Sbjct:   87 EMVDREPYDWTARLIGRGLPNKAGAYLLPYLQSGHMLLLGVLLLSSLISYPGFPLTEVPDAYRGLLLQGLGIVIAINSGTAVYARGIAATKQEPVVFWMLKCLVFGGLALGEL 199
The following BLAST results are available for this feature:
BLAST of NO04G03400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
GAX21833.11.900e-1233.87hypothetical protein FisN_30Hh033 [Fistulifera sol... [more]
OEU16556.14.300e-1235.51hypothetical protein FRACYDRAFT_239151 [Fragilario... [more]
KOO53830.19.600e-1240.71hypothetical protein Ctob_015485 [Chrysochromulina... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009485NSK009485Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03400.1NO04G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579130gene_2116Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g49gene1880Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03400.1NO04G03400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03400 ID=NO04G03400|Name=NO04G03400|organism=Nannochloropsis oceanica|type=gene|length=1794bp
ATGAGGGCTCACCCACCTCAGACTTGTCCGTGGTTATTGGGCCACCAGCA
GGCACAGGTGGCTTCTCCTGCTCCATCCTTCCGTGAATTGGAACCTGTgt
aggatttcgtgttgtgaggtatggagtacagtagaggaggagaagcagct
gtggcagcttgcatcataatcgtcacaagaagcacatgtcttgtaccaat
gctataatatccttttgctgaagcttaactcaatcctgctgtggtccatg
taggcttacagCGCAAACGCACTCATTTTGCTCATTGTCGTCCCCCCTGG
CCCCCACCCCCAAGGCAGACCAAGAAGCACGCAGGTGTACCTTCGACTAG
ACGAGGGGCGAACCGACATCCTGGAAGTTTTAAGACGTAACAGCAGCACA
CAGgtaaggtagaaaggatcatcaccatttctatatttccttcggatgcc
tatccttctcgttcctctccgggaggactgcaactgggaagctaactgca
tctaaaccccccttcaactcccactcaacagCACCTGTCGGCTATGCCAT
CATTACTCATGACCCTCCTGCACCTTACGGTGCTCATGACCGTCATGGCC
CTCCCTATGGGTTGCACCTTTATTTCCTCGTTGCCAGCCAATCATGTACA
TTTGCGCACTCTATCAGCGGGCACAGTCGCTCGACGACCGGGAGCAGGCC
TGTCTCTTCAGTCTGATTTTTGTCTCGTCATCACGGGGGATGCACGACTC
CGCCATTTACGCTTACTGGCGGAGGAAACATCGGAGGATAGCAGTGCTGG
AGAGGAGGCTGGCGGGGCACGACGCAAGCAAGTAATGAGGAAAAAGCGCG
TGCGCAAGGACCGACAAGCAATTGGGGGCCGTGCCTCATCTACAGAGGCG
GATGAGGCCCCAGTGCCCCTAGACCCACTCCTAAAGAAAGCCCAAGAAGA
TATCATGAGCAGAGAATTCGATCGAACGCTGGTGATTGAGGAGTTTTCCG
CCCCCCGTGTCGTTGACCGTAGAAGGCCGACCCCTGCTGAGGTGGCTGCG
GCAGTGGCTGCTAATGCTGCAGCTGACGACGATAATGACGACGATGAAGA
TGAAGAAGGAGAGGAGGGCGAGATGAAAGAAGGAAATGCGGTTCGCGGGC
GAAAGAAGATACAATTTCAAGGTGTGGCGGCGGAAGCCGCGGCTGCTGCC
GTGAAGGAGTGGACGGGCGTGCCGGAGAACCTGAGGTACGATCCGACTTT
TGAATTGCCTATCCCTTCGGAGACGGTGGTGTCACTCTCGGATATAGCCA
CCAAATTCGACGATGCCATTATGACTGATCAAGCAAAGTCTTTGCCGACT
CTGGCGGAGCTGGGCAAGAAGGCAAAGGGGTCGATTTTGAAGCGGCAACA
AGAGGAGGAGGAGAAGGTGGCAAAGGAGCTAGAGCCTCTTGATGATTACG
ATTTAAGCGCAGCCATTTTGGGAGAGGGTCGACCTGTCTTAGGCATTGGT
TTACCTTATTTGCAGAGTTGCCACACTGTTGTTATTCTTGTGACGTTGCT
TTGTGCGTTTGTGGAGTTCCCTGGGTTTCCCTTGACCAATTTTCCTTATG
AGCTGCGGGAGTTCCTGAAGCAGGGGTTGATAGTGATCTATGCTATTAAT
GCCGTTTTGGCGTGGGATAGCATCAAGGAGGCAAAGAAACGGGAGCAGAG
TGTATTCTTTTGGGCGCTGAAGTGCTTTGTGCTGGGTGCGTTGGCACATA
ATGAACTGTTATCGATCAGGGTAAAGCCCCAAGCATCCAGCTGA
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protein sequence of NO04G03400.1

>NO04G03400.1-protein ID=NO04G03400.1-protein|Name=NO04G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MRAHPPQTCPWLLGHQQAQVASPAPSFRELEPVANALILLIVVPPGPHPQ
GRPRSTQVYLRLDEGRTDILEVLRRNSSTQHLSAMPSLLMTLLHLTVLMT
VMALPMGCTFISSLPANHVHLRTLSAGTVARRPGAGLSLQSDFCLVITGD
ARLRHLRLLAEETSEDSSAGEEAGGARRKQVMRKKRVRKDRQAIGGRASS
TEADEAPVPLDPLLKKAQEDIMSREFDRTLVIEEFSAPRVVDRRRPTPAE
VAAAVAANAAADDDNDDDEDEEGEEGEMKEGNAVRGRKKIQFQGVAAEAA
AAAVKEWTGVPENLRYDPTFELPIPSETVVSLSDIATKFDDAIMTDQAKS
LPTLAELGKKAKGSILKRQQEEEEKVAKELEPLDDYDLSAAILGEGRPVL
GIGLPYLQSCHTVVILVTLLCAFVEFPGFPLTNFPYELREFLKQGLIVIY
AINAVLAWDSIKEAKKREQSVFFWALKCFVLGALAHNELLSIRVKPQASS
*
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Synonyms
Publications