NO04G03350, NO04G03350 (gene) Nannochloropsis oceanica

Overview
NameNO04G03350
Unique NameNO04G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1714
Alignment locationchr4:923507..925220 -

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Properties
Property NameValue
DescriptionVacuolar (H )-ATPase G subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:923507..925220 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:1902600proton transmembrane transport
GO:1902600proton transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0042626ATPase activity, coupled to transmembrane movement of substances
Vocabulary: Cellular Component
TermDefinition
GO:0016471vacuolar proton-transporting V-type ATPase complex
GO:0016471vacuolar proton-transporting V-type ATPase complex
Vocabulary: INTERPRO
TermDefinition
IPR005124V-ATPase_G
Homology
BLAST of NO04G03350 vs. NCBI_GenBank
Match: CBJ29174.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.9 bits (172), Expect = 3.900e-9
Identity = 49/126 (38.89%), Postives = 75/126 (59.52%), Query Frame = 0
Query:   17 ILNRHKQPRVQSILSIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPE 143
            +L+ +  P   S  SIM S  + EL AAE KA+ IV EARA+R +R+KEA  EA  +   +RAEKE  +Q  ++   G++G +   L  QT+  +  ++ D+ +NKE V  +LV +V ++   VPE
Sbjct:   23 VLSHNSTP--NSSTSIM-STQIQELIAAETKASSIVAEARASRSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKEGDTLGAQTDAAIQSMTDDYSKNKEVVGDLLVHEVCHIVYSVPE 145          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_008894924.1 (V-type ATPase, G subunit [Phytophthora parasitica INRA-310] >ETI39031.1 V-type ATPase, G subunit [Phytophthora parasitica P1569] >ETK79219.1 V-type ATPase, G subunit [Phytophthora parasitica] >ETL32642.1 V-type ATPase, G subunit [Phytophthora parasitica] >ETL85901.1 V-type ATPase, G subunit [Phytophthora parasitica] >ETM39056.1 V-type ATPase, G subunit [Phytophthora parasitica] >ETN19009.1 V-type ATPase, G subunit [Phytophthora parasitica INRA-310] >ETO67768.1 V-type ATPase, G subunit [Phytophthora parasitica P1976] >ETP08933.1 V-type ATPase, G subunit [Phytophthora parasitica CJ01A1] >ETP36967.1 V-type ATPase, G subunit [Phytophthora parasitica P10297] >KUF82255.1 V-type proton ATPase subunit G 1 [Phytophthora nicotianae] >KUF89121.1 hypothetical protein AM588_10002074 [Phytophthora nicotianae])

HSP 1 Score: 70.5 bits (171), Expect = 5.100e-9
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 0
Query:   34 ASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            A+  + EL AAE KA++++ EAR  RGERLK+A +EA   I  YR + E  FQ  +       G   + L+ +T+ E+ K+ A+F+QNK++V++++      V + VPEA
Sbjct:    3 ANQSIKELMAAETKASKVISEARQERGERLKQAKLEAEAEITAYRKQMERSFQ--MNGNTDLMGDDPSILEEETQREIKKMQAEFQQNKQSVITMMGQHAVRVQLRVPEA 110          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_009518588.1 (hypothetical protein PHYSODRAFT_556110 [Phytophthora sojae] >EGZ23300.1 hypothetical protein PHYSODRAFT_556110 [Phytophthora sojae])

HSP 1 Score: 70.1 bits (170), Expect = 6.700e-9
Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 0
Query:   31 SIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            ++ A+  + EL AAE KA++I+ EAR  RGERLK+A +EA   I  YR + E  FQ  +       G   + L+ +T+ ++ K+ A+F+QNK++V++++      V + VPEA
Sbjct:  398 NMAANQSIKELMAAETKASKIISEARQERGERLKQAKLEAEAEITAYRKQMERTFQ--MNGNTDLMGDDPSILEEETQRDIKKMQAEFQQNKQSVITMMGQHAVRVQIRVPEA 508          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: GAT46755.1 (vacuolar ATP synthase subunit [Mycena chlorophos])

HSP 1 Score: 70.1 bits (170), Expect = 6.700e-9
Identity = 42/111 (37.84%), Postives = 70/111 (63.06%), Query Frame = 0
Query:   30 LSIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDV 141
            +S   S G+  L  AE+ AA+IVQ+AR  R ++LK+A  EA+R I+ Y+  KE++F+ F  +  GT+ S    +D++TE  L  ++A + +NKE V+  L+D+V  V  ++
Sbjct:    1 MSAQQSQGIQTLLEAEKDAAKIVQQARQYRVQKLKDARSEAQREIDEYKKSKEDEFKAFEASHAGTTSSAQTAVDKETEASLKTITASYNKNKEEVVKKLLDRVVLVKPEL 111          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: OQR85287.1 (hypothetical protein ACHHYP_12006 [Achlya hypogyna])

HSP 1 Score: 70.1 bits (170), Expect = 6.700e-9
Identity = 43/110 (39.09%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   34 ASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            A+  + EL AAE KA++I+ EAR  RGERLK+A VEA   I  YR ++++ FQ          G  ++ +D++TE ++ K+  D+++NK+ VL ++   VT V + VP A
Sbjct:    3 ANQSIKELMAAETKASKIISEARQERGERLKQAKVEAEAEIAAYRRQQDQAFQ---MNSTDLLGDDSSIMDQETEQDIQKMRNDYQRNKDGVLQLMTSHVTKVVLKVPVA 109          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: POM57541.1 (V-type ATPase, G subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 70.1 bits (170), Expect = 6.700e-9
Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = 0
Query:   15 IIILNRHKQPRVQSILSIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            I +L++ ++  +Q+ ++  A+  + EL AAE KA++++ EAR  RGERLK+A +EA   I  YR + E  FQ  +       G   + L+ +T+ ++ K+ A+F+QNK++V++++      V + VP+A
Sbjct:  381 ITLLSQWEKADIQATMA--ANQSIKELMAAETKASKVISEARQERGERLKQAKLEAEAEITAYRKQMERTFQ--MNGNTDLMGDDPSILEEETQRDIKKMQAEFQQNKQSVITMMGQHAVRVQIRVPDA 505          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: POM60245.1 (V-type ATPase, G subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 70.1 bits (170), Expect = 6.700e-9
Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = 0
Query:   15 IIILNRHKQPRVQSILSIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            I +L++ ++  +Q+ ++  A+  + EL AAE KA++++ EAR  RGERLK+A +EA   I  YR + E  FQ  +       G   + L+ +T+ ++ K+ A+F+QNK++V++++      V + VP+A
Sbjct:  381 ITLLSQWEKADIQATMA--ANQSIKELMAAETKASKVISEARQERGERLKQAKLEAEAEITAYRKQMERTFQ--MNGNTDLMGDDPSILEEETQRDIKKMQAEFQQNKQSVITMMGQHAVRVQIRVPDA 505          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_002901288.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY58815.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 69.7 bits (169), Expect = 8.800e-9
Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 0
Query:   31 SIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            ++ A+  + EL AAE KA++I+ EAR  RGERLK+A +EA   I  YR + E  FQ  +       G   + L+ +T+ ++ K+ A+F+QNK++V++++      V + VPEA
Sbjct:  397 TMAANQSIKELMAAETKASKIISEARQERGERLKQAKLEAEAEITAYRKQMERSFQ--MNGNTDLMGDDPSILEEETQRDIKKMQAEFQQNKQSVITMMGQHAVRVQLRVPEA 507          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: KIY52780.1 (V-type ATPase [Fistulina hepatica ATCC 64428])

HSP 1 Score: 69.7 bits (169), Expect = 8.800e-9
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 0
Query:   30 LSIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDV 141
            +S   S G+  L  AE++AA+IVQ AR  R +RLK+A  EA + IE Y+  KE +F+ +  +  G +    A +DR+TE +LA ++A ++ NKE V+  L+D+V  V  ++
Sbjct:    1 MSAQQSQGIQTLLEAEKEAAKIVQHARQYRIQRLKDARFEADKEIEAYKKSKEAEFKAYEASHAGATSEVQAAVDRETEVKLANIAASYEANKEKVVKKLMDRVVLVKPEL 111          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_009841516.1 (V-type ATPase, G subunit [Aphanomyces astaci] >ETV69057.1 V-type ATPase, G subunit [Aphanomyces astaci])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   34 ASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            A+  + EL  AE KA++I+ EAR  RG+RLK+A  EA   I  YR ++++ FQ          G  ++ +D++T+ ++ K+  D+++NKEAVL+++   VT V + VP A
Sbjct:    3 ANQSIKELMTAETKASKIISEARQERGDRLKQAKAEAEAEINAYRRQQDQVFQ---MNSTDLLGDDSSIMDKETDQDIQKMKGDYEKNKEAVLNLMYGHVTKVVLKVPAA 109          
The following BLAST results are available for this feature:
BLAST of NO04G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ29174.13.900e-938.89conserved unknown protein [Ectocarpus siliculosus][more]
XP_008894924.15.100e-938.18V-type ATPase, G subunit [Phytophthora parasitica ... [more]
XP_009518588.16.700e-937.17hypothetical protein PHYSODRAFT_556110 [Phytophtho... [more]
GAT46755.16.700e-937.84vacuolar ATP synthase subunit [Mycena chlorophos][more]
OQR85287.16.700e-939.09hypothetical protein ACHHYP_12006 [Achlya hypogyna... [more]
POM57541.16.700e-933.33V-type ATPase, G subunit [Phytophthora palmivora v... [more]
POM60245.16.700e-933.33V-type ATPase, G subunit [Phytophthora palmivora v... [more]
XP_002901288.18.800e-937.17conserved hypothetical protein [Phytophthora infes... [more]
KIY52780.18.800e-938.74V-type ATPase [Fistulina hepatica ATCC 64428][more]
XP_009841516.11.500e-837.27V-type ATPase, G subunit [Aphanomyces astaci] >ETV... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03350.1NO04G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579105gene_2110Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g55gene1875Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03350.1NO04G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03350 ID=NO04G03350|Name=NO04G03350|organism=Nannochloropsis oceanica|type=gene|length=1714bp
AACGATCACAACTTACGGTCGATGATGCCGTCCTCCTAGGACCTAGATAT
GGTACAGTCTTCTTATCCAAGCATGCCCCAGAGTGAAAAAAAACAGTACT
CCGTAGACTACGTTAGGAATTAGAGAAATTCTCGCTCGGGCTGGAAGCTG
GGCTGGGTGCGTCAGAAGCTCTTGCAAATGAACCAGACAAGATGCACTTC
CCACTCACATATTCCCCGCATCATTATCTTAAACAGGCACAAGCAACCCC
GAGTTCAGTCCATACTAAGCATCATGGCATCCGGAGGCATGGCAGAGCTG
CGGGCGGCTGAGCAGAAGGCGGCCCAGATCGTCCAAGAAGCCCGCGCGGg
taaggcaaagtgcttggtggagggaactcgagctgtgtccagtgtttatg
tcgactcccttccgttttgttttgtaggcatccaattcgtgattaggcac
ggatatacacaatcgtgatctgcttctgtcgcgcataaacctgcgggtat
cgtggtattgatgtggtgtctgctgtaatgatgtctcccgcgcttttggc
atgtttgtaaatagagagattcgtctgggcgtcacctcgatgcggtcaaa
cgtgattccaggaagcaagggagtggaggtgtttagtagcatttttggtg
gaagagagcctgagttgaaatgcgctttctcgatctatttgttttcacgt
tttaccgccctcccttcctcatttatccccgcattccatatttcgttccc
accaacacagCTCGTGGCGAGCGGCTCAAGGAGGCAACGGTGGAGGCGCG
CAGAGTGATCGAAGGCTATCGGGCGGAGAAGGAGGAGCAGTTCCAAGAGT
TTGTCAAGACGgtgagagatgggggcgaaatatcttgtgcctcaatggcc
caaccctcattatcgggctttcacttgaaatgccatgccctcctccattg
ccttttgttgctcaacccccgtttgaaagtcgttgagttacagaacactc
acgcttcttcacttctttctcacattcctcgtaatctctcgtagAAATAC
GGCACCAGCGGCTCCCAAACTGCGGACCTGGACAGACAGACAGAGACTGA
ACTCGCCAAGCTCAGgtaccgtctctttttctcgcatgtatacgattccc
ttttctttgaataatagcacaaaccatgttttgtcctgaaatgtcgaaag
accatcttcattcccttgcggtcgttcataagtgatcccttccaccttcc
caccccgtcaatgaaaacacagCGCGGACTTCAAGCAAAACAAGGAAGCG
GTGTTGAGCGTGCTGGTGGACAAGGTCACAAATGTGAATGTTGATGTGCC
AGAGGCTTGGGGCGTCTGTACCAAGTACTAAGCTTTATCATTCGTTCAGC
AGGAGAAAGAAAGAGGATGAATGCAGTGCGCTTGGACGCATTCTTTTCAA
ATAATCATTTCCTACGTGTTTTCTTCGCGGTTGTTGCGTTTACATTGAGA
GGATCGACCGCAAATAATTCAATGTGTGTATGTGATGGGGCGTAGCTTTC
CCGGGAAGGGAGGCATGTTATAAACAGTATGTTTTTGAAAAAGTCTGTCG
ATCTGGTCGGGGGGGGGGGCTGTATGAGATAGCAGCACCGGAAGCGTCAG
CGACAACAAAACCAAAAAGAAAGAAAAAAGAAGAGGGAGTGAATGACGAA
GCATTCAGGCAACG
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protein sequence of NO04G03350.1

>NO04G03350.1-protein ID=NO04G03350.1-protein|Name=NO04G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MNQTRCTSHSHIPRIIILNRHKQPRVQSILSIMASGGMAELRAAEQKAAQ
IVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQT
ADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEAWGVCTKY
*
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Synonyms
Publications