NO04G03350, NO04G03350 (gene) Nannochloropsis oceanica

Overview
NameNO04G03350
Unique NameNO04G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1714
Alignment locationchr4:923507..925220 -

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Properties
Property NameValue
DescriptionVacuolar (H )-ATPase G subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:923507..925220 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:1902600proton transmembrane transport
GO:1902600proton transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0042626ATPase activity, coupled to transmembrane movement of substances
Vocabulary: Cellular Component
TermDefinition
GO:0016471vacuolar proton-transporting V-type ATPase complex
GO:0016471vacuolar proton-transporting V-type ATPase complex
Vocabulary: INTERPRO
TermDefinition
IPR005124V-ATPase_G
Homology
BLAST of NO04G03350 vs. NCBI_GenBank
Match: EWM28668.1 (Vacuolar (H+)-ATPase G subunit [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 3.000e-33
Identity = 93/147 (63.27%), Postives = 101/147 (68.71%), Query Frame = 0
Query:   33 MASGGMAELRAAEQKAAQIVQEAR-------------------------------------AARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPE 143
            MASGGMAELRAAEQKAAQIVQEAR                                     A+RG+RLKEATVEARRVIEGYR +KE+QFQ+FVKTKYG+SGSQTADLDRQTE ELAKLSADFK NK+ VL VLVDKVTNV   + E
Sbjct:    1 MASGGMAELRAAEQKAAQIVQEARAGNNSDSDMTCPPIVDLHPVSENISCANLMLRCRGRDASRGQRLKEATVEARRVIEGYRDDKEKQFQDFVKTKYGSSGSQTADLDRQTEAELAKLSADFKHNKDVVLDVLVDKVTNVKTYMTE 147          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: GAX14375.1 (V-type H+-transporting ATPase subunit G [Fistulifera solaris])

HSP 1 Score: 83.6 bits (205), Expect = 5.900e-13
Identity = 45/107 (42.06%), Postives = 71/107 (66.36%), Query Frame = 0
Query:   37 GMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            G+ EL AAE +A+QIV EAR  RG+R+K+A VEA+ +I+ YR EK+E+F   V +  G+ G+ +A L  +T  E+  + A F++N +  + VL+ K   V+++VP A
Sbjct:    7 GIKELMAAETRASQIVAEARTGRGDRMKQAKVEAQSLIDAYRGEKQEEFNNMVLSTGGSQGNASAKLQAETAKEIKAMEASFQKNAQKAIDVLLSKCCEVSLEVPTA 113          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: GAX09854.1 (V-type H+-transporting ATPase subunit G [Fistulifera solaris])

HSP 1 Score: 82.0 bits (201), Expect = 1.700e-12
Identity = 44/107 (41.12%), Postives = 70/107 (65.42%), Query Frame = 0
Query:   37 GMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            G+ EL AAE +A+QIV EAR  RG+R+K+A VEA+ +I+ YR EK+E+F   V +  G+ G+ +A L  +T  E+  +   F++N +  + VL+ K   V+++VP A
Sbjct:    7 GIKELMAAETRASQIVAEARTGRGDRMKQAKVEAQSLIDAYRGEKQEEFNNMVLSTGGSQGNASAKLQAETAKEIKAMEVSFQKNAQKAIDVLLSKCCEVSLEVPTA 113          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: OEU07532.1 (H+-ATPase G subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.9 bits (198), Expect = 3.800e-12
Identity = 47/112 (41.96%), Postives = 75/112 (66.96%), Query Frame = 0
Query:   33 MASG-GMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            M++G G+ EL AAE +A+QIV EAR  RG+R+K+A  + + +I  YRAEK+E+F   V +K G+ GS +A L  +T  ++A + A F++N +  + VL+ K   V+++VP A
Sbjct:    1 MSTGAGIQELMAAETRASQIVAEARLGRGDRMKQAKADGQDLISTYRAEKQEEFNNMVLSKGGSEGSASAKLQSETNKDVADMEALFQKNAQKAVDVLLSKCCEVSLEVPTA 112          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_002186418.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65888.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.5 bits (197), Expect = 5.000e-12
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 0
Query:   37 GMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            G+ EL AAE +A+QIV EAR  RG+R+K+A VEA+++I+ YRAEK+E+F     ++ G+ G+  A L  +T  E+  +   F++N +  + VL+ K   V+++VP A
Sbjct:    7 GIQELMAAETRASQIVAEARIGRGDRMKQAKVEAQQLIDSYRAEKQEEFNNMALSQGGSEGNAAAALQAETNKEVQAMEGLFQKNVQGAVDVLLSKCCEVSLEVPTA 113          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_008878022.1 (V-type ATPase, G subunit [Aphanomyces invadans] >ETV93386.1 V-type ATPase, G subunit [Aphanomyces invadans])

HSP 1 Score: 73.2 bits (178), Expect = 7.900e-10
Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = 0
Query:   34 ASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEAWGVCTK 150
            A+  + EL AAE KA++I+ EAR  RG+RLK+A  EA   I  YR ++++ FQ          G  +  +D++T+ E+ K++ D+ +NK+AVL+++   VT V + VPEA  V  K
Sbjct:    3 ANQSIKELMAAETKASKIISEARQERGDRLKQAKAEAEAEIAAYRRQQDQVFQ---MNSTDLLGDDSTIMDKETDQEIQKMTGDYNKNKDAVLNMMYGHVTKVVLKVPEARKVTHK 115          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_001831574.1 (hypothetical protein CC1G_11571 [Coprinopsis cinerea okayama7#130] >EAU90247.1 hypothetical protein CC1G_11571 [Coprinopsis cinerea okayama7#130])

HSP 1 Score: 72.0 bits (175), Expect = 1.800e-9
Identity = 44/108 (40.74%), Postives = 71/108 (65.74%), Query Frame = 0
Query:   30 LSIMASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVN 138
            +S   S G+  L  AE++AA+IVQ+AR  R +RLK+A  EA R IE Y+  KE +F+ F  +  GT+    + +DR+TE +LA ++  + +NK+AV++ L+D+V  V+
Sbjct:    1 MSAQQSQGIQTLLEAEKEAAKIVQQARQYRVQRLKDARAEASREIEEYKKAKEAEFRAFESSHAGTTSVAQSTVDRETEEKLAVINESYDRNKDAVVTKLLDRVVLVH 108          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: XP_016272138.1 (V-type H+-transporting ATPase subunit G [Rhodotorula toruloides NP11] >EMS21019.1 V-type H+-transporting ATPase subunit G [Rhodotorula toruloides NP11] >CDR48856.1 RHTO0S21e00320g1_1 [Rhodotorula toruloides])

HSP 1 Score: 72.0 bits (175), Expect = 1.800e-9
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 0
Query:   35 SGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVN 138
            S G+A L  AE++A+QIV +AR  R +RLK+A  EA + IE  RA+KE +F+EF     G S S   ++++ T+  LAK+ A F++N+E V+  L+++V  VN
Sbjct:    5 SQGIATLLDAEKEASQIVAKAREYRNQRLKDARGEASKEIEQLRAKKEAEFKEFENQHSGDSSSSQDEVNKATQEALAKIEASFEENREKVVKDLLERVVQVN 107          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: OQS04858.1 (hypothetical protein THRCLA_20778 [Thraustotheca clavata])

HSP 1 Score: 71.6 bits (174), Expect = 2.300e-9
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   34 ASGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEA 144
            A+  + EL AAE KA++I+ EAR  RGERLK+A VEA   I  YR ++++ FQ          G  ++ +D++TE ++ K+  D+  NKEAVL ++ + V  V + VPEA
Sbjct:    3 ANQSIKELMAAETKASKIISEARQERGERLKQAKVEAEAEIAAYRLQQDQVFQ---MNSTDLLGDDSSIMDKETEDDIQKMRNDYHANKEAVLELMTNYVQKVVLKVPEA 109          
BLAST of NO04G03350 vs. NCBI_GenBank
Match: PRQ72473.1 (Vacuolar (H+)-ATPase G subunit-domain containing protein [Rhodotorula toruloides])

HSP 1 Score: 71.2 bits (173), Expect = 3.000e-9
Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   35 SGGMAELRAAEQKAAQIVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQTADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVN 138
            S G+A L  AE++A+QIV +AR  R +RLK+A  EA + IE  RA+KE  F+EF     G S S   ++++ T+  LAK+ A F++N+E V+  L+++V  VN
Sbjct:    5 SQGIATLLDAEKEASQIVAKAREYRNQRLKDARGEASKEIEQLRAKKEADFKEFENQHSGDSSSSQDEVNKATQEALAKIEASFEENREKVVKDLLERVVQVN 107          
The following BLAST results are available for this feature:
BLAST of NO04G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28668.13.000e-3363.27Vacuolar (H+)-ATPase G subunit [Nannochloropsis ga... [more]
GAX14375.15.900e-1342.06V-type H+-transporting ATPase subunit G [Fistulife... [more]
GAX09854.11.700e-1241.12V-type H+-transporting ATPase subunit G [Fistulife... [more]
OEU07532.13.800e-1241.96H+-ATPase G subunit [Fragilariopsis cylindrus CCMP... [more]
XP_002186418.15.000e-1241.12predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_008878022.17.900e-1038.79V-type ATPase, G subunit [Aphanomyces invadans] >E... [more]
XP_001831574.11.800e-940.74hypothetical protein CC1G_11571 [Coprinopsis ciner... [more]
XP_016272138.11.800e-942.72V-type H+-transporting ATPase subunit G [Rhodotoru... [more]
OQS04858.12.300e-940.91hypothetical protein THRCLA_20778 [Thraustotheca c... [more]
PRQ72473.13.000e-942.72Vacuolar (H+)-ATPase G subunit-domain containing p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03350.1NO04G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579105gene_2110Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g55gene1875Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03350.1NO04G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03350 ID=NO04G03350|Name=NO04G03350|organism=Nannochloropsis oceanica|type=gene|length=1714bp
AACGATCACAACTTACGGTCGATGATGCCGTCCTCCTAGGACCTAGATAT
GGTACAGTCTTCTTATCCAAGCATGCCCCAGAGTGAAAAAAAACAGTACT
CCGTAGACTACGTTAGGAATTAGAGAAATTCTCGCTCGGGCTGGAAGCTG
GGCTGGGTGCGTCAGAAGCTCTTGCAAATGAACCAGACAAGATGCACTTC
CCACTCACATATTCCCCGCATCATTATCTTAAACAGGCACAAGCAACCCC
GAGTTCAGTCCATACTAAGCATCATGGCATCCGGAGGCATGGCAGAGCTG
CGGGCGGCTGAGCAGAAGGCGGCCCAGATCGTCCAAGAAGCCCGCGCGGg
taaggcaaagtgcttggtggagggaactcgagctgtgtccagtgtttatg
tcgactcccttccgttttgttttgtaggcatccaattcgtgattaggcac
ggatatacacaatcgtgatctgcttctgtcgcgcataaacctgcgggtat
cgtggtattgatgtggtgtctgctgtaatgatgtctcccgcgcttttggc
atgtttgtaaatagagagattcgtctgggcgtcacctcgatgcggtcaaa
cgtgattccaggaagcaagggagtggaggtgtttagtagcatttttggtg
gaagagagcctgagttgaaatgcgctttctcgatctatttgttttcacgt
tttaccgccctcccttcctcatttatccccgcattccatatttcgttccc
accaacacagCTCGTGGCGAGCGGCTCAAGGAGGCAACGGTGGAGGCGCG
CAGAGTGATCGAAGGCTATCGGGCGGAGAAGGAGGAGCAGTTCCAAGAGT
TTGTCAAGACGgtgagagatgggggcgaaatatcttgtgcctcaatggcc
caaccctcattatcgggctttcacttgaaatgccatgccctcctccattg
ccttttgttgctcaacccccgtttgaaagtcgttgagttacagaacactc
acgcttcttcacttctttctcacattcctcgtaatctctcgtagAAATAC
GGCACCAGCGGCTCCCAAACTGCGGACCTGGACAGACAGACAGAGACTGA
ACTCGCCAAGCTCAGgtaccgtctctttttctcgcatgtatacgattccc
ttttctttgaataatagcacaaaccatgttttgtcctgaaatgtcgaaag
accatcttcattcccttgcggtcgttcataagtgatcccttccaccttcc
caccccgtcaatgaaaacacagCGCGGACTTCAAGCAAAACAAGGAAGCG
GTGTTGAGCGTGCTGGTGGACAAGGTCACAAATGTGAATGTTGATGTGCC
AGAGGCTTGGGGCGTCTGTACCAAGTACTAAGCTTTATCATTCGTTCAGC
AGGAGAAAGAAAGAGGATGAATGCAGTGCGCTTGGACGCATTCTTTTCAA
ATAATCATTTCCTACGTGTTTTCTTCGCGGTTGTTGCGTTTACATTGAGA
GGATCGACCGCAAATAATTCAATGTGTGTATGTGATGGGGCGTAGCTTTC
CCGGGAAGGGAGGCATGTTATAAACAGTATGTTTTTGAAAAAGTCTGTCG
ATCTGGTCGGGGGGGGGGGCTGTATGAGATAGCAGCACCGGAAGCGTCAG
CGACAACAAAACCAAAAAGAAAGAAAAAAGAAGAGGGAGTGAATGACGAA
GCATTCAGGCAACG
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protein sequence of NO04G03350.1

>NO04G03350.1-protein ID=NO04G03350.1-protein|Name=NO04G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MNQTRCTSHSHIPRIIILNRHKQPRVQSILSIMASGGMAELRAAEQKAAQ
IVQEARAARGERLKEATVEARRVIEGYRAEKEEQFQEFVKTKYGTSGSQT
ADLDRQTETELAKLSADFKQNKEAVLSVLVDKVTNVNVDVPEAWGVCTKY
*
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Synonyms
Publications