NO04G02540, NO04G02540 (gene) Nannochloropsis oceanica

Overview
NameNO04G02540
Unique NameNO04G02540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1570
Alignment locationchr4:677273..678842 +

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Properties
Property NameValue
DescriptionPseudouridine synthase and archaeosine transglycosylase domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:677273..678842 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_domain
IPR016437Transl_RNA-bd_prd
IPR002478PUA
Homology
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: EWM28633.1 (pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 220.3 bits (560), Expect = 4.100e-54
Identity = 104/127 (81.89%), Postives = 117/127 (92.13%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELP 128
            MFKRFN++DFSSNGQVKSSV+RGIR  ILEQYPRLESVM DIFP+KA+V V+K PGHVQVVVL  EP+FFSLRDG +FPTLR+LHQYPGFM EVQVDKGAIRF+LGGA+IMCPGLTSKGG ME++LP
Sbjct:   52 MFKRFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQYPGFMREVQVDKGAIRFILGGAHIMCPGLTSKGGDMEEDLP 178
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: PPD97362.1 (hypothetical protein GOBAR_DD05575 [Gossypium barbadense])

HSP 1 Score: 164.1 bits (414), Expect = 3.500e-37
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAV 133
            MFK+F+ ED SS  QVK+SV+R IR  I E+YPRLE V+ D+ P+KA + V+K   H+ +V++   P+FF++RDG Y PTLR+LHQYP  M + QVD+GAI+FVL GANIMCPGLTS GG ++DE+   T V
Sbjct:    1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPRLEPVLDDLLPKKAPLIVVKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEAETPV 132
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: XP_012434196.1 (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Gossypium raimondii] >KJB45329.1 hypothetical protein B456_007G301600 [Gossypium raimondii])

HSP 1 Score: 162.5 bits (410), Expect = 1.000e-36
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAV 133
            MFK+F+ ED SS  QVK+SV+R IR  I E+YP LE V+ D+ P+KA + V+K   H+ +V++   P+FF++RDG Y PTLR+LHQYP  M + QVD+GAIRFVL GANIMCPGLTS GG ++DE+   T V
Sbjct:    1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVVKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIRFVLAGANIMCPGLTSPGGALDDEVEAETPV 132
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: KXN71454.1 (hypothetical protein CONCODRAFT_78353 [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 162.5 bits (410), Expect = 1.000e-36
Identity = 75/135 (55.56%), Postives = 105/135 (77.78%), Query Frame = 0 
Query:    1 MFKRFN-KEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAVVR 135
            MF++FN KED S   Q+KSSV+RG+R ++L++YPRLESV+ +++P+KA+V  +K   HV + V+ G+ +FF+  DG  +PTL+VLH+YPGF+ EVQVD+GAI+FVL GANIMCPGLTSKG KM+D   +    +R
Sbjct:    1 MFRKFNLKEDVSGQSQLKSSVQRGLRQKLLDEYPRLESVIDELWPKKATVLQLKCQDHVSLFVINGQILFFNHYDGPIYPTLKVLHKYPGFLPEVQVDRGAIKFVLSGANIMCPGLTSKGAKMDDVAIDKVVAIR 135
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: PUZ56972.1 (hypothetical protein GQ55_5G391100 [Panicum hallii var. hallii])

HSP 1 Score: 162.5 bits (410), Expect = 1.000e-36
Identity = 73/132 (55.30%), Postives = 99/132 (75.00%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAV 133
            MFK+F+ ED S   QVK+SV+R IR  I ++YP LE ++ D+ P+K+ + V+K   H+ +VV+   P+FF++RDG Y PTLR+LHQYPG M + QVD+GAI+FVL GANIMCPGLTS GG ++DE+ E T V
Sbjct:    1 MFKKFSSEDISGQNQVKASVQRRIRQSIADEYPSLEPLLDDLLPKKSPMIVVKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPGIMKKFQVDRGAIKFVLSGANIMCPGLTSPGGVLDDEVEEETPV 132
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: PAN31025.1 (hypothetical protein PAHAL_E03119, partial [Panicum hallii] >PAN31026.1 hypothetical protein PAHAL_E03119, partial [Panicum hallii])

HSP 1 Score: 162.2 bits (409), Expect = 1.300e-36
Identity = 73/132 (55.30%), Postives = 98/132 (74.24%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAV 133
            MFK+F+ ED S   QVK+SV+R IR  I ++YP LE ++ D+ P+K+ + V+K   H+ +VV+   P+FF++RDG Y PTLR+LHQYPG M   QVD+GAI+FVL GANIMCPGLTS GG ++DE+ E T V
Sbjct:   42 MFKKFSSEDISGQNQVKASVQRRIRQSIADEYPSLEPLLDDLLPKKSPMIVVKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPGIMKRFQVDRGAIKFVLSGANIMCPGLTSPGGVLDDEVEEETPV 173
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: XP_022719459.1 (malignant T-cell-amplified sequence 1 homolog [Durio zibethinus])

HSP 1 Score: 162.2 bits (409), Expect = 1.300e-36
Identity = 74/132 (56.06%), Postives = 99/132 (75.00%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAV 133
            MFK+F+ ED SS  QVK+SV+R IR  I E+YP LE V+ D+ P+KA + V+K   H+ +V++   P+FF++RDG Y PTLR+LHQYP  M ++QVD+GAI+FVL GANIMCPGLTS GG ++DE+   T V
Sbjct:    1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVVKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEAETPV 132
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: EOY11541.1 (Pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Theobroma cacao])

HSP 1 Score: 161.8 bits (408), Expect = 1.700e-36
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAV 133
            MFK+F+ ED SS  QVK+SV+R IR  I E+YP LE V+ D+ P+KA + V K   H+ +V++   P+FF++RDG Y PTLR+LHQYP  M ++QVD+GAIRFVL GANIMCPGLTS GG ++DE+   T V
Sbjct:    1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVAKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDDEVDAETPV 132
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: XP_010528903.1 (PREDICTED: malignant T-cell-amplified sequence 1 homolog [Tarenaya hassleriana])

HSP 1 Score: 161.8 bits (408), Expect = 1.700e-36
Identity = 74/137 (54.01%), Postives = 98/137 (71.53%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAVVRYIE 138
            MFK+F+ E+ SS  QVK+SV+R IR  I ++YP LE V+ D+ P+KA + V+K P H+ +VV+   P+FF +RDG Y PTLR+LHQYP  M   QVD+GAI+FVL GANIMCPGLTS GG M++++     V  Y E
Sbjct:    1 MFKKFSSEEVSSQNQVKASVQRKIRQSIQDEYPELEPVLDDLLPKKAPLIVVKCPNHLSLVVINNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGGIMDEQVEAERPVAVYAE 137
[Close]
BLAST of NO04G02540 vs. NCBI_GenBank
Match: XP_021283272.1 (malignant T-cell-amplified sequence 1 homolog [Herrania umbratica])

HSP 1 Score: 161.8 bits (408), Expect = 1.700e-36
Identity = 75/132 (56.82%), Postives = 98/132 (74.24%), Query Frame = 0 
Query:    1 MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVEVIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGAIRFVLGGANIMCPGLTSKGGKMEDELPEGTAV 133
            MFK+F+ ED SS  QVK+SV+R IR  I E+YP LE V+ D+ P+KA + V K   H+ +V++   P+FF++RDG Y PTLR+LHQYP  M ++QVD+GAIRFVL GANIMCPGLTS GG ++DE+   T V
Sbjct:    1 MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVAKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDDEVDAETPV 132
The following BLAST results are available for this feature:
BLAST of NO04G02540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28633.14.100e-5481.89pseudouridine synthase and archaeosine transglycos... [more]
PPD97362.13.500e-3756.82hypothetical protein GOBAR_DD05575 [Gossypium barb... [more]
XP_012434196.11.000e-3656.82PREDICTED: malignant T-cell-amplified sequence 1 h... [more]
KXN71454.11.000e-3655.56hypothetical protein CONCODRAFT_78353 [Conidiobolu... [more]
PUZ56972.11.000e-3655.30hypothetical protein GQ55_5G391100 [Panicum hallii... [more]
PAN31025.11.300e-3655.30hypothetical protein PAHAL_E03119, partial [Panicu... [more]
XP_022719459.11.300e-3656.06malignant T-cell-amplified sequence 1 homolog [Dur... [more]
EOY11541.11.700e-3656.82Pseudouridine synthase and archaeosine transglycos... [more]
XP_010528903.11.700e-3654.01PREDICTED: malignant T-cell-amplified sequence 1 h... [more]
XP_021283272.11.700e-3656.82malignant T-cell-amplified sequence 1 homolog [Her... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009566NSK009566Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02540.1NO04G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G02540.2NO04G02540.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578777gene_2024Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100182g4gene1952Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02540.1NO04G02540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G02540.2NO04G02540.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02540 ID=NO04G02540|Name=NO04G02540|organism=Nannochloropsis oceanica|type=gene|length=1570bp
CAGGTCTCACGCACCACCGCCAGGGCTATATTTGATCCCGAAGACTCTTC
CGTCGCCTCGGTCATCGACAATCGACGGCGAGCATCAGCCGTGCCCAGAA
AGCCTCCTTTCACCCCCTTCAGCTAGCTAGTTAGCAGCAGTATGTTCAAA
AGgtatgcgtcagtatagtgccgactggccgtatcgctcaggtggatggg
caaattatctttctcccctttccgccttgacgctcaaaacttctttccct
gctccattccttgcaagGTTTAACAAAGAGGATTTCTCGTCCAATGGCCA
AGTCAAGTCCAGCGTACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAAT
ATCCGCGGTTGGAAAGCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCT
GTGGAGGTCATCAAAATgtacgtatgctttccagggcacagatgagaagg
acatggttggaagggaaatggacggctgacatggaataagtgctttggtt
gctctgtcagttgactcattattgctttatgactattatgtctacagTCC
GGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTTCAGCC
TCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAATgtacg
tttagtctgcgacgccctccaattttttctctgtatgcacgcatgctttt
taaatatgtagtaagtgtgattttcattctcccttgcaaatgacagtcat
tggtatttgaccccgcgagtggacgcaagcacgcattcgctttattacca
cacacagcattcgctttataaccacacacaatttcgaatgatccattttt
cccctgacttctttcacgccctcaacaacgactcaaacagATCCCGGCTT
CATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTTGTCTTGGGTG
GGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGGTAAAATGGAA
GACGAGTTGCCGGAAGGAACGGCGGTGgtacgttacattgagacaacgag
ggaaggaggaaaaggaaacaaggacaggaggggcagatgactcattattt
ttatttctccacctctttaatgaatgcagGCGATTCGCGCGGAGGGGAAG
GAAATGGAGCTGGCCTTGGGGTTAACGAAAATGTCAACGACTGACATgta
cgcatctttctgtcttgtaactttcaatgtcagatgcgctttcttattgt
gttcccatattcttgatatcatttttaagtgtctttttgtggttggactg
cccaaactcacattttccatatgtatcatctacgttttccatgcatacgc
agACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGTGAA
CGACGGCTTGTGGAGgtatgtttcgaaaggaaaaatgttttcacacaacg
atctcgccctcactatttcctccctttctccctcccatacgacctcgcac
agAACGGAGTTTATCGACTAAAGCAAAGTAGAGACTCAAAAGAAGAACAA
TCAAAACAATGACAAACTTA
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protein sequence of NO04G02540.1

>NO04G02540.1-protein ID=NO04G02540.1-protein|Name=NO04G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVE
VIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGA
IRFVLGGANIMCPGLTSKGGKMEDELPEGTAVAIRAEGKEMELALGLTKM
STTDIREKNKGIAIELIHYVNDGLWRTEFID*
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protein sequence of NO04G02540.2

>NO04G02540.2-protein ID=NO04G02540.2-protein|Name=NO04G02540.2|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVE
VIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGA
IRFVLGGANIMCPGLTSKGGKMEDELPEGTAVVRYIETTREGGKGNKDRR
GR*
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Synonyms
Publications