NO04G02000, NO04G02000 (gene) Nannochloropsis oceanica

Overview
NameNO04G02000
Unique NameNO04G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr4:582804..583307 -

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Properties
Property NameValue
DescriptionRibosomal protein L49/IMG2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:582804..583307 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR007740Ribosomal_L49/IMG2
Homology
BLAST of NO04G02000 vs. NCBI_GenBank
Match: EWM28556.1 (Ribosomal protein L49/IMG2 [Nannochloropsis gaditana])

HSP 1 Score: 285.4 bits (729), Expect = 1.100e-73
Identity = 141/167 (84.43%), Postives = 148/167 (88.62%), Query Frame = 0
Query:    1 MERVSPLLGRFGGHLRKHSNSAKKRIFGSRKYYEEVIKPAREEAANAPPTPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            MER SPLL RFGGHLRKHSN AKKRIFGSR  YE+VI+PARE+AA  PP PLKYP TY P RVLPNGWSAPPDPA +G   LP+ +LPFQVERTDKGRWLPVYTDVRKGRTQLIT+VRKVSGDLEEMR EMSKVCANQEVRIRTGPRLEVKGRYT QLR WLAGLGF
Sbjct:    1 MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVG---LPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_009519864.1 (hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae] >EGZ24576.1 hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae])

HSP 1 Score: 117.5 bits (293), Expect = 4.100e-23
Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 0
Query:   19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            S +A +R+  +R+   +   PA   A    P       PLKY  TY PE+V  NGWS  P+  + G        LPFQV+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R WL GLGF
Sbjct:    9 SVNAVERVASNRQIRRKARHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLPG--------LPFQVKRTAVGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVVVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_002903250.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55674.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 116.3 bits (290), Expect = 9.100e-23
Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0
Query:   19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            S +A +R+  +R+   +   PA   A    P       PLKY  TY PE+V  NGWS  P+  + G        LPF V+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R WL GLGF
Sbjct:    9 SVNAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLSG--------LPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_008893337.1 (hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >ETI45080.1 hypothetical protein F443_10260 [Phytophthora parasitica P1569] >ETK85055.1 hypothetical protein L915_10035 [Phytophthora parasitica] >ETL38477.1 hypothetical protein L916_09942 [Phytophthora parasitica] >ETL91597.1 hypothetical protein L917_09865 [Phytophthora parasitica] >ETM44891.1 hypothetical protein L914_09916 [Phytophthora parasitica] >ETN21556.1 hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >ETO73743.1 hypothetical protein F444_10359 [Phytophthora parasitica P1976] >ETP14897.1 hypothetical protein F441_10197 [Phytophthora parasitica CJ01A1] >ETP42965.1 hypothetical protein F442_10164 [Phytophthora parasitica P10297])

HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22
Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0
Query:   19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            S +A +R+  +R+   +   PA   A    P       PLKY  TY PE+V  NGWS  P+  + G        LPF V+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R WL GLGF
Sbjct:    9 SANAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLPG--------LPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: KUF80785.1 (hypothetical protein AM587_10014489 [Phytophthora nicotianae] >KUF90810.1 hypothetical protein AM587_10013837 [Phytophthora nicotianae])

HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22
Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0
Query:   19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            S +A +R+  +R+   +   PA   A    P       PLKY  TY PE+V  NGWS  P+  + G        LPF V+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R WL GLGF
Sbjct:  129 SANAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLPG--------LPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 274          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: POM74066.1 (Hypothetical protein PHPALM_9022 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22
Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0
Query:   19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            S +A +R+  +R+   +   PA   A    P       PLKY  TY PE+V  NGWS  P+  + G        LPF V+RT  G  LPVY D R GRT+++T++R+  GD +E+R EMSKVC  +EV +R G RLEV G + + +R WL GLGF
Sbjct:    9 SANAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPETPLPG--------LPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVVVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_002903158.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55582.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 113.6 bits (283), Expect = 5.900e-22
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 0
Query:   19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            S +A +R+  +R+   +   PA   A    P       PLKY  TY PE+V  NGWS  P+  + G        LPF V+RT  G  LPVY D R GRT+++T++R+  GD + +R EMSKVC  +EV +R G RLEV G + + +R WL GLGF
Sbjct:    9 SVNAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLSG--------LPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQGLRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: CCA24515.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 104.8 bits (260), Expect = 2.700e-19
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 0
Query:   51 PLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            PLKY  TY PE V  NGWS  P+  + G        +PF+V+RT KG  LPVY D R GRT+++T++R+  G   E++ EMSKVC  ++V  R G RLEV G +   LR WL GLGF
Sbjct:   48 PLKYEPTYIPENVSFNGWSPAPENPLPG--------IPFKVKRTAKGLQLPVYRDYRNGRTRVLTILRRYDGHEGELQSEMSKVCGGKDVIARPG-RLEVVGDHLMDLRKWLTGLGF 155          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_012200434.1 (hypothetical protein SPRG_05761 [Saprolegnia parasitica CBS 223.65] >KDO28890.1 hypothetical protein SPRG_05761 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 104.4 bits (259), Expect = 3.600e-19
Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   21 SAKKRIFGSRKYYEEVIKPAREEAANAPPTP-----LKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            +++++I    K+   + K AR+EA N  PTP     LKY  TY PE+V  NGWS    PA       P + LPF V+RT  G  LPVY D R GRT++IT+VR+  GD  E++QE+S VC    V  R G RLEV G Y+ Q++ +  GLGF
Sbjct:   17 ASQRQINRKLKHPATLRKLARKEAEN--PTPEVVRSLKYEPTYVPEKVSFNGWS----PARAEG---PLEGLPFTVKRTSTGLQLPVYRDYRNGRTRIITIVRRFDGDEAELQQELSTVCDGSPVLSRPG-RLEVVGDYSHQIKQYFTGLGF 158          
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_008614403.1 (hypothetical protein SDRG_10201 [Saprolegnia diclina VS20] >EQC32001.1 hypothetical protein SDRG_10201 [Saprolegnia diclina VS20])

HSP 1 Score: 104.0 bits (258), Expect = 4.700e-19
Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   21 SAKKRIFGSRKYYEEVIKPAREEAANAPPTP-----LKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            +++++I    K+   + K AR+EA N  PTP     LKY  TY PE+V  NGWS    PA       P + LPF V+RT  G  LPVY D R GRT++IT+VR+  GD  E++QE+S VC    V  R G RLEV G Y+ Q++ +  GLGF
Sbjct:   17 ASQRQINRKLKHPATLRKLARKEAEN--PTPEVVRTLKYEPTYVPEKVSFNGWS----PARAEG---PVEGLPFTVKRTSTGLQLPVYRDYRNGRTRIITIVRRFDGDEAELQQELSTVCDGSPVLSRPG-RLEVVGDYSHQIKQYFTGLGF 158          
The following BLAST results are available for this feature:
BLAST of NO04G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28556.11.100e-7384.43Ribosomal protein L49/IMG2 [Nannochloropsis gadita... [more]
XP_009519864.14.100e-2343.87hypothetical protein PHYSODRAFT_252435 [Phytophtho... [more]
XP_002903250.19.100e-2343.23conserved hypothetical protein [Phytophthora infes... [more]
XP_008893337.11.500e-2243.23hypothetical protein PPTG_01705 [Phytophthora para... [more]
KUF80785.11.500e-2243.23hypothetical protein AM587_10014489 [Phytophthora ... [more]
POM74066.11.500e-2243.23Hypothetical protein PHPALM_9022 [Phytophthora pal... [more]
XP_002903158.15.900e-2242.58conserved hypothetical protein [Phytophthora infes... [more]
CCA24515.12.700e-1948.72conserved hypothetical protein [Albugo laibachii N... [more]
XP_012200434.13.600e-1944.74hypothetical protein SPRG_05761 [Saprolegnia paras... [more]
XP_008614403.14.700e-1944.74hypothetical protein SDRG_10201 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009603NSK009603Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02000.1NO04G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578672gene_1990Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g90gene1982Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02000.1NO04G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02000 ID=NO04G02000|Name=NO04G02000|organism=Nannochloropsis oceanica|type=gene|length=504bp
ATGGAGCGTGTCTCGCCTCTCTTGGGCCGCTTTGGGGGCCACCTGCGCAA
GCACTCCAACAGCGCCAAGAAGCGTATCTTTGGCAGTCGCAAGTACTACG
AGGAAGTCATCAAACCTGCCCGGGAAGAGGCCGCCAATGCCCCCCCGACT
CCTCTTAAGTACCCACTCACGTATACGCCTGAGCGGGTCTTGCCCAATGG
ATGGTCTGCGCCACCCGACCCAGCTATGATGGGCGCCACCTCCTTGCCTC
GCGACACCCTCCCCTTCCAAGTCGAACGGACAGACAAAGGCCGATGGCTT
CCCGTGTACACAGACGTGCGAAAAGGCCGCACGCAGCTGATTACGATGGT
GCGCAAGGTCTCGGGCGACCTGGAAGAGATGCGGCAGGAAATGTCCAAGG
TGTGTGCGAACCAGGAGGTTAGAATACGGACGGGCCCGCGGTTGGAGGTC
AAAGGCCGATACACGACGCAACTACGGGGTTGGTTGGCGGGCTTAGGGTT
CTAG
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protein sequence of NO04G02000.1

>NO04G02000.1-protein ID=NO04G02000.1-protein|Name=NO04G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MERVSPLLGRFGGHLRKHSNSAKKRIFGSRKYYEEVIKPAREEAANAPPT
PLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWL
PVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEV
KGRYTTQLRGWLAGLGF*
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Synonyms
Publications